Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006186.1

Orthogroup ID

OG0005377

Physical Location & Seq

Genomic Coordinates Forward (+)

11544 .. 12510

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006186.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgggcttaaatctgcagatacaggagctagggcgtttggtttgcaatttggtgacagtggttcctgaaggaatcgttgtcttcttctcttcatttgattatgaaggagaggtgtacaatgcatgggaggcttcaggcatcctcgatagaattaagaagaagaagcgtctatttagagagcctaggaagaatacatatgtagaatctgttctgaaggagtacaaggaaacaattgataccttgtcttcaggagaaaggaaagaaaatccttctcagagtggtgccatacttcttgctgttgttggtggtaagatatcggagggcatcaacttgagtgatgggatgggtcggtgtatagtcatggttggactgccctatgcgagcccttctgatgttgagctgatggagagggtgaagcacattgaaagattgggaaattcaaattcgattaagatgaccaattctttacgtggtaatgaactttacagtggagaagcacatgaaggatttgatatcctccgaagttgcagacacagaggaaaagaatattatgagaatctttgcatgaaagctgtaaaccagtccatcggtagagcaatccggcatataaatgattatgcagcaattttactagttgatacacgctatgcagctgactcctcaacacggaatttcaggcatccaactagcaagctcccacagtggataaaggatcgttttgttgcttcaggagattacggccaacttcataggatgttgcatcagttttttagttataacaaaaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

263

Amino Acids

29.92

Weight (kDa)

9.16

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G79890 AT1G79890 AT1G79890 AT1G79890
fragaria_vesca	FvH4_6g31470 FvH4_6g31470 FvH4_6g31470
malus_domestica	MD09G1210800.v1.1
prunus_persica	Prupe.3G069100_v2.0.a1 Prupe.3G069100_v2.0.a1
pyrus_communis	pycom09g12830 pycom09g12840
rosa_chinensis	RchiOBHm_Chr2g0138331
rosa_laevigata	RLG00000019734 RLG00000019735
rosa_multiflora	Rmu_sc0002475.1_g000005 Rmu_sc0006186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106330
rosa_rugosa	Rorug02G0351300
rosa_samantha	Rh2AG399400 Rh2BG408700 Rh2CG385900 Rh2DG419300
rosa_wichuraiana	Rw2G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	777
AccB1I	GGYRCC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	720
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	3 cut(s)	436, 442, 670
AcuI	CTGAAG	5 cut(s)	87, 117, 231, 233, 711
AfaI	GTAC	2 cut(s)	116, 221
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgsI	TTSAA	2 cut(s)	425, 441
AhlI	ACTAGT	1 cut(s)	631
AluBI	AGCT	5 cut(s)	28, 400, 572, 653, 694
AluI	AGCT	5 cut(s)	28, 400, 572, 653, 694
AlwI	GGATC	1 cut(s)	720
AoxI	GGCC	1 cut(s)	739
ApeKI	GCWGC	2 cut(s)	620, 650
ApoI	RAATTY	3 cut(s)	436, 442, 670
Asp700I	GAANNNNTTC	1 cut(s)	207
AspA2I	CCTAGG	1 cut(s)	182
AsuHPI	GGTGA	2 cut(s)	64, 424
AvrII	CCTAGG	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	73, 237
BbvI	GCAGC	2 cut(s)	632, 662
BccI	CCATC	4 cut(s)	332, 337, 397, 593
BceAI	ACGGC	1 cut(s)	754
BcuI	ACTAGT	1 cut(s)	631
BfaI	CTAG	4 cut(s)	29, 183, 632, 687
BfmI	CTRYAG	1 cut(s)	14
BisI	GCNGC	2 cut(s)	621, 651
BlnI	CCTAGG	1 cut(s)	182
BlsI	GCNGC	2 cut(s)	622, 652
BmiI	GGNNCC	2 cut(s)	63, 283
BmsI	GCATC	4 cut(s)	147, 333, 688, 769
BpiI	GAAGAC	2 cut(s)	73, 237
BpuEI	CTTGAG	1 cut(s)	352
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse1I	ACTGG	1 cut(s)	580
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	4 cut(s)	138, 348, 679, 759
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	649
BseXI	GCAGC	2 cut(s)	632, 662
BshFI	GGCC	1 cut(s)	741
BshNI	GGYRCC	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	601
BslI	CCNNNNNNNGG	1 cut(s)	666
BsnI	GGCC	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	712
BspANI	GGCC	1 cut(s)	741
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	63, 283
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	58, 488, 702
Bst6I	CTCTTC	1 cut(s)	94
BstAUI	TGTACA	1 cut(s)	114
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	382, 692
BstDEI	CTNAG	1 cut(s)	273
BstF5I	GGATG	4 cut(s)	138, 348, 679, 759
BstKTI	GATC	1 cut(s)	715
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	632, 662
BstV2I	GAAGAC	2 cut(s)	73, 237
BsuRI	GGCC	1 cut(s)	741
BtsCI	GGATG	4 cut(s)	138, 348, 679, 759
BtsIMutI	CAGTG	3 cut(s)	63, 493, 707
Cac8I	GCNNGC	2 cut(s)	382, 692
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	115, 220
CviAII	CATG	4 cut(s)	123, 361, 500, 565
CviQI	GTAC	2 cut(s)	115, 220
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	182
Eco24I	GRGCYC	1 cut(s)	386
Eco32I	GATATC	2 cut(s)	315, 514
Eco57I	CTGAAG	5 cut(s)	87, 117, 231, 233, 711
EcoRV	GATATC	2 cut(s)	315, 514
EcoT14I	CCWWGG	1 cut(s)	182
EcoT22I	ATGCAT	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	4 cut(s)	126, 364, 503, 568
FatI	CATG	4 cut(s)	122, 360, 499, 564
FauNDI	CATATG	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	621, 651
FokI	GGATG	4 cut(s)	125, 355, 666, 766
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	621, 651
FspBI	CTAG	4 cut(s)	29, 183, 632, 687
GluI	GCNGC	2 cut(s)	621, 651
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	1 cut(s)	601
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	126, 364, 503, 568
HinfI	GANTC	4 cut(s)	72, 203, 556, 656
HpaII	CCGG	1 cut(s)	601
HphI	GGTGA	2 cut(s)	64, 424
Hpy166II	GTNNAC	2 cut(s)	115, 577
Hpy188I	TCNGA	5 cut(s)	213, 276, 319, 391, 521
Hpy188III	TCNNGA	3 cut(s)	65, 249, 729
Hpy8I	GTNNAC	2 cut(s)	115, 577
HpyAV	CCTTC	6 cut(s)	62, 98, 208, 279, 396, 497
HpyCH4III	ACNGT	3 cut(s)	58, 488, 702
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	8 cut(s)	16, 45, 122, 528, 564, 620, 650, 760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	126, 364, 503, 568
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	2 cut(s)	25, 699
LpnPI	CCDG	8 cut(s)	8, 78, 120, 234, 593, 614, 661, 714
Lsp1109I	GCAGC	2 cut(s)	632, 662
LweI	GCATC	4 cut(s)	147, 333, 688, 769
MaeI	CTAG	4 cut(s)	29, 183, 632, 687
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	7 cut(s)	73, 76, 81, 169, 172, 199, 237
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	8 cut(s)	46, 150, 231, 436, 442, 460, 624, 670
MlyI	GAGTC	1 cut(s)	650
MmeI	TCCRAC	2 cut(s)	346, 707
MnlI	CCTC	8 cut(s)	103, 121, 152, 313, 402, 527, 530, 670
Mph1103I	ATGCAT	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	3 cut(s)	8, 153, 450
MslI	CAYNNNNRTG	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	1 cut(s)	601
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	1 cut(s)	712
NlaIII	CATG	4 cut(s)	126, 364, 503, 568
NlaIV	GGNNCC	2 cut(s)	63, 283
NmuCI	GTSAC	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	72, 203, 556
PkrI	GCNGC	2 cut(s)	622, 652
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
Ppu21I	YACGTR	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	63, 283
PsrI	GAACNNNNNNTAC	2 cut(s)	192, 224
PstI	CTGCAG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	2 cut(s)	116, 221
RsaNI	GTAC	2 cut(s)	115, 220
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	8, 153, 450
SatI	GCNGC	2 cut(s)	621, 651
Sau3AI	GATC	1 cut(s)	712
SchI	GAGTC	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	8 cut(s)	30, 114, 242, 402, 472, 574, 655, 696
SfaNI	GCATC	4 cut(s)	147, 333, 688, 769
SfcI	CTRYAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SpeI	ACTAGT	1 cut(s)	631
Sse9I	AATT	8 cut(s)	46, 150, 231, 436, 442, 460, 624, 670
SspI	AATATT	1 cut(s)	548
SspMI	CTAG	4 cut(s)	29, 183, 632, 687
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	58, 488, 702
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	2 cut(s)	144, 446
TasI	AATT	8 cut(s)	46, 150, 231, 436, 442, 460, 624, 670
TatI	WGTACW	2 cut(s)	114, 219
TfiI	GAWTC	3 cut(s)	72, 203, 556
Tru1I	TTAA	3 cut(s)	8, 153, 450
Tru9I	TTAA	3 cut(s)	8, 153, 450
TscAI	CASTG	3 cut(s)	63, 493, 707
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	2 cut(s)	620, 650
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	6 cut(s)	81, 117, 492, 516, 581, 737
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	3 cut(s)	63, 493, 707
XapI	RAATTY	3 cut(s)	436, 442, 670
XmaJI	CCTAGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	4 cut(s)	29, 183, 632, 687
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.