Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005377

Physical Location & Seq

Genomic Coordinates Forward (+)

57923265 .. 57928532

Gene Structure 5268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

ATGGAAGAAGAAAACCAAAATGGGGAGGCGCCCCCAAAATTCCCAGCATTTCCTTACAAACCCTACGCCATCCAGATCGACTTCATGAACGCCCTTTATCACTCTCTCAACCAAGGCGGCCTCTCCATGCTCGAAAGCCCCACCGGGACTGGTAAAACTCTAAGTATCATTTGTAGTGCTCTGCAATGGGTAGTCGATAAGAGGGAGCAAGAGAAATTGAAAAAAGAGGTTGAAACTGACAATAGTAGTGCTAAAGGTGGTGAATTTGGCTCGGATGATGAACCTGATTGGATGAGGAATGCTGTTATTAACAATGACATTCAGGGTGAGGAGAAGAAGTCTAGGAAGAAGGATAAATTTGGGAGTGGATTTCGCAAGGCCGATAAGAGAAAGAACCATGCAAATTGTACTGATTTGTTCTCTCGGCGTGTTGAGGAAGAGTCTTGCACAAAGGAGGGAAAGAGTTTGCAAGTGAGCAGTGATGCTGTGGATTTGAATGATGAGGAGGAGTTTTTGCTGGAAGAACATGAGAGTGATGAGGAAGGTCTTCCGTGTGCTGGGAAGTCGAAGAGGAAGGTTGCTGGGGTTTCTCTTAGTTCGTCAAGTGACGAGGAAGATGGAGCAGATGGGTCTAGCGATGATGAAGATGAGGAGGAAGAGAAGTTGAAGGTTTATTTTTGTAGTCGGACACATTCACAGCTTTCACAGTTCATAAAGGAGTTGAGAAAGACAGTCTTTGCTAATGAGATGAAGGTGGTTTGTTTGGGCTCAAGGAAGAATTTCTGCATTAACCAAGAGGTATTGAAACTTGGAAATTCAACTTGCATCAATGAACGCTGTTTGGAACTTCAGAAAAACAAGAATAAGGAAGTTTCTAAAATCAAGAGCTTAGGTGCAGGAGGAAGGATTTGCAGGAACAAGGCTTCTTGTGGATGCCCAATGCTTAGGAAACATAAACAACAGAAAGAATTCAAGAACATGATGTCTCAACTCGGTGCCTTGGATATTGAAGATCTTGTTCATCAGGGAAGGAACACGAGGTGTTGTCCATATTATGGCTCCCGAAGCATGGTTCCTGCTGCTGATCTGGTGGTTCTACCATATCAATCTCTTCTTTCAAAAGCATCCCGCGAATCACTTGGTCTGAATCTAAAGAACAATATTATTATCATAGATGAGGCCCACAATCTAGCTGACTCCTTAATCAGCATGTATGACGCAAAAATCACTTTGTCACAGCTGGAAGATGTGCAGTGCAATATTGAAAAGTACTTTGCAAGGTTTAGCAATCTCTTGGGACCTGGAAACCGCAGATACATCCAAACACTCACAGTGCTCACTCGGGCTTTTCTTCGAGTTTTGCTCAATGAGGACACCGGTTATGAAGGTTCTTGCCATGATACTGAAAACTCTTCTGGAGAAAATGGTGTGCCTACTTCCTCTATGGCCATCAATGATTTTTTATTTTCACTCAATATAGACAACATCAACTTGGTTAAATTGCTTGAGTATATAAAGGAAAGCAAAATCATGCACAAGATCAGTGGATATGGGGATAAACTAGCCAGCTTTGAAAAAAAATTGTCACTTGATGATAGTGAAGAAAGAAGCACTCTGTCTAGTTTCCAGGCATTAGCTGATTTTTTGCTGTCACTGACAAACAAAGATGGTGATGGGAGGATTATCATTTCACGGACTAAACCAACATGCTCTGGGCAGCAAGGGGGATACATCAAATATGTTATGCTCACAGGGGAGAAGATATTTTCTGAGATTGTGGAACAGGCACATGCTGTTCTACTGGCTGGAGGAACTCTGCAACCCATAGAAGAAACGAGGGAGCGGCTTTTTCCTTGGTTACCACCGAACCAGTTGCATTTCTTTTCATGTAGCCACATTGTTCCTCCAGAGAGCATTTTACCAGTTGCAGTTGCTCGTGGCCCTTCTGGTCAGCCTTTCGATTTTAGTTACAGCTCTAGAAGGTCATCAATCATGATACAGGAGCTAGGGCGTTTGGTTTGCAATTTGGTGACAGTGGTTCCTGAAGGAATCGTTGTCTTCTTCTCTTCATTTGATTATGAAGGAGAGGTGTACAATGCATGGGAGGCTTCAGGCATCCTCGATAGAATTAAGAAGAAGAAGCGTCTATTTAGAGAGCCTAGGAAGAATACATATGTAGAATCTGTTCTGAAGGAGTACAAGGAAACAATTGATACCTTGTCTTCAGGAGAAAGGAAAGAAAATCCTTCTCAGAGTGGTGCCATACTTCTTGCTGTTGTTGGTGGTAAGATATCGGAGGGCATCAACTTGAGTGATGGGATGGGTCGGTGTATAGTCATGGTTGGACTGCCCTATGCGAGCCCTTCTGATGTTGAGCTGATGGAGAGGGTGAAGCACATTGAAAGATTGGGAAATTCAAATTCGATTAAGATGACCAATTCTTTACGTGGTAATGAACTTTACAGTGGAGAAGCACATGAAGGATTTGATATCCTCCGAAGTTGCAGACACAGAGGAAAAGAATATTATGAGAATCTTTGCATGAAAGCTGTAAACCAGTCCATCGGTATGTTCTTACAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

861

Amino Acids

96.31

Weight (kDa)

5.81

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	226 - 414	2.7e-52	DEAD_2
Helicase_C_2	PF13307	674 - 856	4.4e-29	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G79890 AT1G79890 AT1G79890 AT1G79890
fragaria_vesca	FvH4_6g31470 FvH4_6g31470 FvH4_6g31470
malus_domestica	MD09G1210800.v1.1
prunus_persica	Prupe.3G069100_v2.0.a1 Prupe.3G069100_v2.0.a1
pyrus_communis	pycom09g12830 pycom09g12840
rosa_chinensis	RchiOBHm_Chr2g0138331
rosa_laevigata	RLG00000019734 RLG00000019735
rosa_multiflora	Rmu_sc0002475.1_g000005 Rmu_sc0006186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106330
rosa_rugosa	Rorug02G0351300
rosa_samantha	Rh2AG399400 Rh2BG408700 Rh2CG385900 Rh2DG419300
rosa_wichuraiana	Rw2G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	28, 995, 2258
AccB7I	CCANNNNNTGG	1 cut(s)	1055
AccBSI	CCGCTC	1 cut(s)	1843
AccII	CGCG	1 cut(s)	1131
AciI	CCGC	4 cut(s)	117, 1129, 1309, 1843
AcoI	YGGCCR	1 cut(s)	1446
AcsI	RAATTY	8 cut(s)	38, 263, 356, 778, 814, 968, 2413, 2419
AcuI	CTGAAG	5 cut(s)	833, 2064, 2094, 2208, 2210
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	1041
AfaI	GTAC	4 cut(s)	409, 1271, 2093, 2198
AfiI	CCNNNNNNNGG	4 cut(s)	22, 557, 1055, 1069
AgeI	ACCGGT	1 cut(s)	1376
AjnI	CCWGG	2 cut(s)	1300, 1626
Alw21I	GWGCWC	2 cut(s)	181, 1338
Alw26I	GTCTC	1 cut(s)	990
Ama87I	CYCGRG	1 cut(s)	1341
AoxI	GGCC	5 cut(s)	118, 378, 1179, 1446, 1939
ApeKI	GCWGC	2 cut(s)	1079, 1717
ApoI	RAATTY	8 cut(s)	38, 263, 356, 778, 814, 968, 2413, 2419
AsiGI	ACCGGT	1 cut(s)	1376
Asp700I	GAANNNNTTC	4 cut(s)	546, 779, 968, 2184
AspA2I	CCTAGG	1 cut(s)	2159
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	1180, 1298, 1940
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	272, 338, 1682, 2041, 2401
AvaI	CYCGRG	1 cut(s)	1341
AvaII	GGWCC	1 cut(s)	1298
AvrII	CCTAGG	1 cut(s)	2159
BalI	TGGCCA	1 cut(s)	1448
BanI	GGYRCC	3 cut(s)	28, 995, 2258
BanII	GRGCYC	2 cut(s)	770, 2363
BauI	CACGAG	2 cut(s)	1036, 1935
BbsI	GAAGAC	3 cut(s)	539, 2050, 2214
Bbv12I	GWGCWC	2 cut(s)	181, 1338
BbvI	GCAGC	2 cut(s)	1066, 1729
BcgI	CGANNNNNNTGC	2 cut(s)	1855, 1889
BciT130I	CCWGG	2 cut(s)	1302, 1628
BciVI	GTATCC	1 cut(s)	1721
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	990
BfaI	CTAG	8 cut(s)	342, 633, 1190, 1562, 1620, 1977, 2006, 2160
BfoI	RGCGCY	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	1721
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	4 cut(s)	118, 1080, 1718, 1844
BlnI	CCTAGG	1 cut(s)	2159
BlsI	GCNGC	4 cut(s)	119, 1081, 1719, 1845
BmcAI	AGTACT	1 cut(s)	1271
Bme1390I	CCNGG	3 cut(s)	145, 1302, 1628
Bme18I	GGWCC	1 cut(s)	1298
BmeT110I	CYCGRG	1 cut(s)	1341
BmgT120I	GGNCC	3 cut(s)	1180, 1298, 1940
BmiI	GGNNCC	7 cut(s)	30, 997, 1060, 1074, 1299, 2040, 2260
BmrFI	CCNGG	3 cut(s)	145, 1302, 1628
BmsI	GCATC	6 cut(s)	472, 834, 923, 1133, 2124, 2310
BpiI	GAAGAC	3 cut(s)	539, 2050, 2214
BplI	GAGNNNNNCTC	2 cut(s)	1347, 1379
BpmI	CTGGAG	3 cut(s)	1437, 1827, 1890
Bpu10I	CCTNAGC	2 cut(s)	889, 944
BpuEI	CTTGAG	3 cut(s)	754, 1526, 2329
BpuMI	CCSGG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	2447
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	112, 999, 1853, 2159
BsaWI	WCCGGW	1 cut(s)	1376
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 557, 1055, 1069
Bse118I	RCCGGY	1 cut(s)	1376
Bse1I	ACTGG	5 cut(s)	154, 1806, 1870, 1922, 2557
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	1302, 1628
BseDI	CCNNGG	4 cut(s)	112, 999, 1853, 2159
BseGI	GGATG	8 cut(s)	69, 280, 297, 938, 1124, 1317, 2115, 2325
BseLI	CCNNNNNNNGG	4 cut(s)	22, 557, 1055, 1069
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	1761, 2264
BseNI	ACTGG	5 cut(s)	154, 1806, 1870, 1922, 2557
BseRI	GAGGAG	4 cut(s)	344, 518, 521, 665
BseXI	GCAGC	2 cut(s)	1066, 1729
BseYI	CCCAGC	3 cut(s)	43, 557, 581
BsgI	GTGCAG	2 cut(s)	915, 1271
Bsh1236I	CGCG	1 cut(s)	1131
BshFI	GGCC	5 cut(s)	120, 380, 1181, 1448, 1941
BshNI	GGYRCC	3 cut(s)	28, 995, 2258
BshTI	ACCGGT	1 cut(s)	1376
BsiHKAI	GWGCWC	2 cut(s)	181, 1338
BsiHKCI	CYCGRG	1 cut(s)	1341
BsiSI	CCGG	2 cut(s)	144, 1377
BslFI	GGGAC	2 cut(s)	160, 1311
BslI	CCNNNNNNNGG	4 cut(s)	22, 557, 1055, 1069
BsmAI	GTCTC	1 cut(s)	990
BsmFI	GGGAC	2 cut(s)	160, 1311
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	5 cut(s)	120, 380, 1181, 1448, 1941
BsoBI	CYCGRG	1 cut(s)	1341
Bsp1286I	GDGCHC	4 cut(s)	181, 770, 1338, 2363
Bsp1407I	TGTACA	1 cut(s)	2091
Bsp143I	GATC	4 cut(s)	75, 1012, 1084, 1539
BspACI	CCGC	4 cut(s)	117, 1129, 1309, 1843
BspANI	GGCC	5 cut(s)	120, 380, 1181, 1448, 1941
BspCNI	CTCAG	2 cut(s)	1762, 2263
BspFNI	CGCG	1 cut(s)	1131
BspHI	TCATGA	2 cut(s)	84, 1992
BspLI	GGNNCC	7 cut(s)	30, 997, 1060, 1074, 1299, 2040, 2260
BspT107I	GGYRCC	3 cut(s)	28, 995, 2258
BsrBI	CCGCTC	1 cut(s)	1843
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	1376
BsrGI	TGTACA	1 cut(s)	2091
BsrI	ACTGG	5 cut(s)	154, 1806, 1870, 1922, 2557
BssAI	RCCGGY	1 cut(s)	1376
BssECI	CCNNGG	4 cut(s)	112, 999, 1853, 2159
BssMI	GATC	4 cut(s)	75, 1012, 1084, 1539
BssNI	GRCGYC	1 cut(s)	29
BssSI	CACGAG	2 cut(s)	1036, 1935
BssT1I	CCWWGG	4 cut(s)	112, 999, 1853, 2159
Bst2BI	CACGAG	2 cut(s)	1036, 1935
Bst2UI	CCWGG	2 cut(s)	1302, 1628
Bst4CI	ACNGT	5 cut(s)	708, 733, 1333, 2035, 2465
Bst6I	CTCTTC	6 cut(s)	432, 563, 651, 1116, 1417, 2071
BstACI	GRCGYC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	2091
BstBAI	YACGTR	1 cut(s)	2447
BstC8I	GCNNGC	2 cut(s)	1567, 2359
BstDEI	CTNAG	6 cut(s)	161, 593, 889, 944, 1770, 2250
BstEII	GGTNACC	1 cut(s)	1857
BstF5I	GGATG	8 cut(s)	69, 280, 297, 938, 1124, 1317, 2115, 2325
BstFNI	CGCG	1 cut(s)	1131
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	4 cut(s)	78, 1015, 1087, 1542
BstMAI	GTCTC	1 cut(s)	990
BstMBI	GATC	4 cut(s)	75, 1012, 1084, 1539
BstMWI	GCNNNNNNNGC	2 cut(s)	1065, 2105
BstNI	CCWGG	2 cut(s)	1302, 1628
BstNSI	RCATGY	3 cut(s)	1213, 1710, 1793
BstPI	GGTNACC	1 cut(s)	1857
BstSCI	CCNGG	3 cut(s)	143, 1300, 1626
BstUI	CGCG	1 cut(s)	1131
BstV1I	GCAGC	2 cut(s)	1066, 1729
BstV2I	GAAGAC	3 cut(s)	539, 2050, 2214
BstX2I	RGATCY	1 cut(s)	1012
BstYI	RGATCY	1 cut(s)	1012
BsuI	GTATCC	1 cut(s)	1721
BsuRI	GGCC	5 cut(s)	120, 380, 1181, 1448, 1941
BtgZI	GCGATG	1 cut(s)	651
BtsCI	GGATG	8 cut(s)	69, 280, 297, 938, 1124, 1317, 2115, 2325
BtsI	GCAGTG	2 cut(s)	484, 1259
BtsIMutI	CAGTG	7 cut(s)	484, 1259, 1338, 1549, 1652, 2040, 2470
Cac8I	GCNNGC	2 cut(s)	1567, 2359
CciI	TCATGA	2 cut(s)	84, 1992
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	1376
Cfr13I	GGNCC	3 cut(s)	1180, 1298, 1940
CseI	GACGC	2 cut(s)	1226, 2132
Csp6I	GTAC	4 cut(s)	408, 1270, 2092, 2197
CspAI	ACCGGT	1 cut(s)	1376
CspCI	CAANNNNNGTGG	2 cut(s)	1525, 1560
CviQI	GTAC	4 cut(s)	408, 1270, 2092, 2197
DdeI	CTNAG	6 cut(s)	161, 593, 889, 944, 1770, 2250
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	4 cut(s)	77, 1014, 1086, 1541
DpnII	GATC	4 cut(s)	75, 1012, 1084, 1539
DraIII	CACNNNGTG	1 cut(s)	1041
EaeI	YGGCCR	1 cut(s)	1446
Eam1104I	CTCTTC	6 cut(s)	432, 563, 651, 1116, 1417, 2071
EarI	CTCTTC	6 cut(s)	432, 563, 651, 1116, 1417, 2071
Eco130I	CCWWGG	4 cut(s)	112, 999, 1853, 2159
Eco24I	GRGCYC	2 cut(s)	770, 2363
Eco32I	GATATC	2 cut(s)	2292, 2491
Eco47I	GGWCC	1 cut(s)	1298
Eco57I	CTGAAG	5 cut(s)	833, 2064, 2094, 2208, 2210
Eco88I	CYCGRG	1 cut(s)	1341
Eco91I	GGTNACC	1 cut(s)	1857
EcoO109I	RGGNCCY	1 cut(s)	1298
EcoO65I	GGTNACC	1 cut(s)	1857
EcoRI	GAATTC	1 cut(s)	968
EcoRII	CCWGG	2 cut(s)	1300, 1626
EcoRV	GATATC	2 cut(s)	2292, 2491
EcoT14I	CCWWGG	4 cut(s)	112, 999, 1853, 2159
EcoT22I	ATGCAT	1 cut(s)	2101
EcoT38I	GRGCYC	2 cut(s)	770, 2363
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	4 cut(s)	112, 999, 1853, 2159
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FaqI	GGGAC	2 cut(s)	160, 1311
FauI	CCCGC	1 cut(s)	1136
FauNDI	CATATG	1 cut(s)	2173
Fnu4HI	GCNGC	4 cut(s)	118, 1080, 1718, 1844
FokI	GGATG	8 cut(s)	56, 287, 304, 945, 1111, 1304, 2102, 2332
FriOI	GRGCYC	2 cut(s)	770, 2363
Fsp4HI	GCNGC	4 cut(s)	118, 1080, 1718, 1844
FspBI	CTAG	8 cut(s)	342, 633, 1190, 1562, 1620, 1977, 2006, 2160
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	4 cut(s)	118, 1080, 1718, 1844
GsaI	CCCAGC	3 cut(s)	47, 561, 585
GsuI	CTGGAG	3 cut(s)	1437, 1827, 1890
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	5 cut(s)	120, 380, 1181, 1448, 1941
HapII	CCGG	2 cut(s)	144, 1377
HgaI	GACGC	2 cut(s)	1226, 2132
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	7 cut(s)	440, 1133, 1147, 1196, 2049, 2180, 2533
HpaII	CCGG	2 cut(s)	144, 1377
HphI	GGTGA	5 cut(s)	272, 338, 1682, 2041, 2401
Hpy166II	GTNNAC	2 cut(s)	2092, 2554
Hpy8I	GTNNAC	2 cut(s)	2092, 2554
HpyCH4III	ACNGT	5 cut(s)	708, 733, 1333, 2035, 2465
HpyCH4IV	ACGT	1 cut(s)	2446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1065, 2105
HpyF3I	CTNAG	6 cut(s)	161, 593, 889, 944, 1770, 2250
HpySE526I	ACGT	1 cut(s)	2446
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	1 cut(s)	29
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	75, 1012, 1084, 1539
LmnI	GCTCC	5 cut(s)	205, 620, 1064, 1840, 2002
Lsp1109I	GCAGC	2 cut(s)	1066, 1729
LweI	GCATC	6 cut(s)	472, 834, 923, 1133, 2124, 2310
MaeI	CTAG	8 cut(s)	342, 633, 1190, 1562, 1620, 1977, 2006, 2160
MaeII	ACGT	1 cut(s)	2446
MaeIII	GTNAC	7 cut(s)	605, 1233, 1584, 1650, 1857, 1967, 2029
MalI	GATC	4 cut(s)	77, 1014, 1086, 1541
MbiI	CCGCTC	1 cut(s)	1843
MboI	GATC	4 cut(s)	75, 1012, 1084, 1539
MfeI	CAATTG	1 cut(s)	2208
MflI	RGATCY	1 cut(s)	1012
MhlI	GDGCHC	4 cut(s)	181, 770, 1338, 2363
MlsI	TGGCCA	1 cut(s)	1448
MluNI	TGGCCA	1 cut(s)	1448
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	2 cut(s)	449, 1190
MmeI	TCCRAC	2 cut(s)	665, 2323
Mox20I	TGGCCA	1 cut(s)	1448
Mph1103I	ATGCAT	1 cut(s)	2101
MroXI	GAANNNNTTC	4 cut(s)	546, 779, 968, 2184
MscI	TGGCCA	1 cut(s)	1448
MseI	TTAA	6 cut(s)	309, 789, 1202, 1497, 2130, 2427
MslI	CAYNNNNRTG	2 cut(s)	531, 2567
Msp20I	TGGCCA	1 cut(s)	1448
MspA1I	CMGCKG	1 cut(s)	1240
MspI	CCGG	2 cut(s)	144, 1377
MspR9I	CCNGG	3 cut(s)	145, 1302, 1628
MunI	CAATTG	1 cut(s)	2208
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	1302, 1628
MvnI	CGCG	1 cut(s)	1131
MwoI	GCNNNNNNNGC	2 cut(s)	1065, 2105
NarI	GGCGCC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	2173
NdeII	GATC	4 cut(s)	75, 1012, 1084, 1539
NlaIV	GGNNCC	7 cut(s)	30, 997, 1060, 1074, 1299, 2040, 2260
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	5 cut(s)	605, 1233, 1584, 1650, 2029
NsiI	ATGCAT	1 cut(s)	2101
NspI	RCATGY	3 cut(s)	1213, 1710, 1793
PagI	TCATGA	2 cut(s)	84, 1992
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	4 cut(s)	546, 779, 968, 2184
PfeI	GAWTC	5 cut(s)	1133, 1147, 2049, 2180, 2533
PflMI	CCANNNNNTGG	1 cut(s)	1055
PinAI	ACCGGT	1 cut(s)	1376
PkrI	GCNGC	4 cut(s)	119, 1081, 1719, 1845
PleI	GAGTC	2 cut(s)	448, 1190
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	2 cut(s)	448, 1190
Ppu21I	YACGTR	1 cut(s)	2447
PpuMI	RGGWCCY	1 cut(s)	1298
Psp5II	RGGWCCY	1 cut(s)	1298
Psp6I	CCWGG	2 cut(s)	1300, 1626
PspEI	GGTNACC	1 cut(s)	1857
PspFI	CCCAGC	3 cut(s)	43, 557, 581
PspGI	CCWGG	2 cut(s)	1300, 1626
PspN4I	GGNNCC	7 cut(s)	30, 997, 1060, 1074, 1299, 2040, 2260
PspPI	GGNCC	3 cut(s)	1180, 1298, 1940
PspPPI	RGGWCCY	1 cut(s)	1298
PsrI	GAACNNNNNNTAC	2 cut(s)	2169, 2201
PsuI	RGATCY	1 cut(s)	1012
PvuII	CAGCTG	1 cut(s)	1240
RsaI	GTAC	4 cut(s)	409, 1271, 2093, 2198
RsaNI	GTAC	4 cut(s)	408, 1270, 2092, 2197
RseI	CAYNNNNRTG	2 cut(s)	531, 2567
SaqAI	TTAA	6 cut(s)	309, 789, 1202, 1497, 2130, 2427
SatI	GCNGC	4 cut(s)	118, 1080, 1718, 1844
Sau3AI	GATC	4 cut(s)	75, 1012, 1084, 1539
Sau96I	GGNCC	3 cut(s)	1180, 1298, 1940
ScaI	AGTACT	1 cut(s)	1271
SchI	GAGTC	2 cut(s)	449, 1190
ScrFI	CCNGG	3 cut(s)	145, 1302, 1628
SduI	GDGCHC	4 cut(s)	181, 770, 1338, 2363
SfaNI	GCATC	6 cut(s)	472, 834, 923, 1133, 2124, 2310
SfoI	GGCGCC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	1298
SmiMI	CAYNNNNRTG	2 cut(s)	531, 2567
SmlI	CTYRAG	3 cut(s)	769, 1505, 2308
SmoI	CTYRAG	3 cut(s)	769, 1505, 2308
SsiI	CCGC	4 cut(s)	117, 1129, 1309, 1843
SspDI	GGCGCC	1 cut(s)	28
SspI	AATATT	3 cut(s)	1162, 1261, 2525
SspMI	CTAG	8 cut(s)	342, 633, 1190, 1562, 1620, 1977, 2006, 2160
StyD4I	CCNGG	3 cut(s)	143, 1300, 1626
StyI	CCWWGG	4 cut(s)	112, 999, 1853, 2159
TaaI	ACNGT	5 cut(s)	708, 733, 1333, 2035, 2465
TaiI	ACGT	1 cut(s)	2449
TaqI	TCGA	8 cut(s)	78, 132, 195, 566, 1354, 1959, 2121, 2423
TatI	WGTACW	4 cut(s)	407, 1269, 2091, 2196
TauI	GCSGC	2 cut(s)	120, 1846
TfiI	GAWTC	5 cut(s)	1133, 1147, 2049, 2180, 2533
Tru1I	TTAA	6 cut(s)	309, 789, 1202, 1497, 2130, 2427
Tru9I	TTAA	6 cut(s)	309, 789, 1202, 1497, 2130, 2427
TscAI	CASTG	7 cut(s)	484, 1259, 1338, 1549, 1659, 2040, 2470
TseFI	GTSAC	5 cut(s)	605, 1233, 1584, 1650, 2029
TseI	GCWGC	2 cut(s)	1079, 1717
Tsp45I	GTSAC	5 cut(s)	605, 1233, 1584, 1650, 2029
TspGWI	ACGGA	2 cut(s)	540, 1708
TspRI	CASTG	7 cut(s)	484, 1259, 1338, 1549, 1659, 2040, 2470
Van91I	CCANNNNNTGG	1 cut(s)	1055
VpaK11BI	GGWCC	1 cut(s)	1298
XapI	RAATTY	8 cut(s)	38, 263, 356, 778, 814, 968, 2413, 2419
XbaI	TCTAGA	1 cut(s)	1976
XceI	RCATGY	3 cut(s)	1213, 1710, 1793
XmaJI	CCTAGG	1 cut(s)	2159
XmnI	GAANNNNTTC	4 cut(s)	546, 779, 968, 2184
XspI	CTAG	8 cut(s)	342, 633, 1190, 1562, 1620, 1977, 2006, 2160
ZrmI	AGTACT	1 cut(s)	1271
Zsp2I	ATGCAT	1 cut(s)	2101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.