Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005377

Physical Location & Seq

Genomic Coordinates Forward (+)

11379271 .. 11380188

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTTCATGGGCTTGAGTTTACAGATACAGGAACTAGGGCGTTTGGTTTGCAATTTGGTGACCGCAGTTCCTGAGGGAATCGTTGTCTTCTTCTCTTCATTTGACTATGAAGGAGAAGTTTACGATGCCTGGGAAGCTTCAGGCATCCTTGAAAGGATTAAGAAGAAGAAGCGTCTATTTCGAGAACCTAGGAAGAGCACACATGTAGAATCTGTTCTCAAGGAATACAAGGAAACAATTGAAACATTGTCTTCTGGAGGGGGGAAAGAAAATCCTTCTCAGAGTGGCGCAATACTTCTTGCTGTCGTCGGTGGTAAGATATCAGAAGGCATCAACTTAAGCGATGGGATGGGCCGGTGTATAGTCATGGTTGGACTGCCCTATGCTAGCCCTTTTGATATTGAGTTGATGGAGAGGGTGAAGTACATAGAAGGATTGGGAAACTCAAATTCCACACAGCTGCCAAATCTTTCACTTAGTAATGAACTTCACGGTGGAGAAGTATGTGCAGGGTTTGACATCCTCAGAAGTTGCAGACGCCGAGGAAAAGATTATTATGAGAATCTTTGCATGAAGGCTGTAAATCAGTCCATCGGCAGAGCAATCCGACACATAAATGACTACGCAGCAATTTTACTAGTTGATATGCGATACGCAACTGATTCCTCAAAACAGTATTCTTCCCATCCAACTAACAAGCTTCCAAAGTGGATAAAGGATCGGTTCGTTGCTTCAGCTGATTACGGTGAAGTTCATAGGATGTTACATCAGTTCTTCAAACATAACAAGAAGAAATGGCTTCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

270

Amino Acids

30.33

Weight (kDa)

8.83

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G79890 AT1G79890 AT1G79890 AT1G79890
fragaria_vesca	FvH4_6g31470 FvH4_6g31470 FvH4_6g31470
malus_domestica	MD09G1210800.v1.1
prunus_persica	Prupe.3G069100_v2.0.a1 Prupe.3G069100_v2.0.a1
pyrus_communis	pycom09g12830 pycom09g12840
rosa_chinensis	RchiOBHm_Chr2g0138331
rosa_laevigata	RLG00000019734 RLG00000019735
rosa_multiflora	Rmu_sc0002475.1_g000005 Rmu_sc0006186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106330
rosa_rugosa	Rorug02G0351300
rosa_samantha	Rh2AG399400 Rh2BG408700 Rh2CG385900 Rh2DG419300
rosa_wichuraiana	Rw2G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	726
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	3 cut(s)	123, 717, 785
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	1 cut(s)	425
AflII	CTTAAG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	152, 242, 778
AhlI	ACTAGT	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	137, 460, 700, 737
AluI	AGCT	4 cut(s)	137, 460, 700, 737
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	352
ApeKI	GCWGC	2 cut(s)	460, 626
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	213
AspA2I	CCTAGG	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	70, 430, 758
AsuNHI	GCTAGC	1 cut(s)	386
AvrII	CCTAGG	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	79, 243
Bbv12I	GWGCWC	1 cut(s)	200
BbvI	GCAGC	2 cut(s)	447, 638
BccI	CCATC	5 cut(s)	338, 343, 403, 599, 693
BciT130I	CCWGG	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	637
BfaI	CTAG	4 cut(s)	35, 189, 387, 638
BfrI	CTTAAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	461, 627
BlnI	CCTAGG	1 cut(s)	188
BlsI	GCNGC	2 cut(s)	462, 628
Bme1390I	CCNGG	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	3 cut(s)	115, 153, 339
BmtI	GCTAGC	1 cut(s)	390
BpiI	GAAGAC	2 cut(s)	79, 243
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	2 cut(s)	34, 203
BsaHI	GRCGYC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	129, 188, 541
Bse118I	RCCGGY	1 cut(s)	354
Bse21I	CCTNAGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	3 cut(s)	129, 188, 541
BseGI	GGATG	5 cut(s)	144, 354, 519, 685, 765
BseMII	CTCAG	3 cut(s)	63, 293, 538
BseXI	GCAGC	2 cut(s)	447, 638
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	355
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	718
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	3 cut(s)	64, 292, 537
BspOI	GCTAGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	726
BspQI	GCTCTTC	1 cut(s)	188
BspTI	CTTAAG	1 cut(s)	337
BsrFI	RCCGGY	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	354
BssECI	CCNNGG	3 cut(s)	129, 188, 541
BssMI	GATC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	3 cut(s)	494, 675, 746
Bst6I	CTCTTC	2 cut(s)	100, 188
BstACI	GRCGYC	1 cut(s)	538
BstAFI	CTTAAG	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	4 cut(s)	72, 279, 476, 524
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	5 cut(s)	144, 354, 519, 685, 765
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	721
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	206
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	447, 638
BstV2I	GAAGAC	2 cut(s)	79, 243
Bsu36I	CCTNAGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	354
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	5 cut(s)	144, 354, 519, 685, 765
Cac8I	GCNNGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	354
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	2 cut(s)	161, 546
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	4 cut(s)	7, 203, 367, 571
CviJI	RGCY	9 cut(s)	12, 137, 354, 390, 460, 578, 700, 737, 799
CviKI_1	RGCY	9 cut(s)	12, 137, 354, 390, 460, 578, 700, 737, 799
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	72, 279, 476, 524
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
Eam1104I	CTCTTC	2 cut(s)	100, 188
EarI	CTCTTC	2 cut(s)	100, 188
Eco130I	CCWWGG	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	321
Eco57I	CTGAAG	3 cut(s)	123, 717, 785
Eco81I	CCTNAGG	1 cut(s)	72
Eco91I	GGTNACC	1 cut(s)	58
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	4 cut(s)	10, 206, 370, 574
FatI	CATG	4 cut(s)	6, 202, 366, 570
Fnu4HI	GCNGC	2 cut(s)	461, 627
FokI	GGATG	5 cut(s)	131, 361, 506, 672, 772
Fsp4HI	GCNGC	2 cut(s)	461, 627
FspBI	CTAG	4 cut(s)	35, 189, 387, 638
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	2 cut(s)	461, 627
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	2 cut(s)	161, 546
HhaI	GCGC	1 cut(s)	290
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	4 cut(s)	10, 206, 370, 574
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HindIII	AAGCTT	2 cut(s)	135, 698
HinfI	GANTC	4 cut(s)	78, 209, 562, 662
HpaII	CCGG	1 cut(s)	355
HphI	GGTGA	3 cut(s)	70, 430, 758
Hpy166II	GTNNAC	2 cut(s)	20, 121
Hpy188I	TCNGA	4 cut(s)	282, 325, 527, 608
Hpy188III	TCNNGA	3 cut(s)	71, 182, 255
Hpy8I	GTNNAC	2 cut(s)	20, 121
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	5 cut(s)	104, 285, 320, 425, 568
HpyCH4III	ACNGT	3 cut(s)	494, 675, 746
HpyCH4V	TGCA	4 cut(s)	51, 509, 534, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	4 cut(s)	72, 279, 476, 524
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	4 cut(s)	10, 206, 370, 574
HspAI	GCGC	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	718
LguI	GCTCTTC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	14, 84, 115, 126, 142, 240, 368, 495
Lsp1109I	GCAGC	2 cut(s)	447, 638
LweI	GCATC	3 cut(s)	115, 153, 339
MaeI	CTAG	4 cut(s)	35, 189, 387, 638
MaeIII	GTNAC	2 cut(s)	58, 762
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MfeI	CAATTG	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	4 cut(s)	52, 237, 448, 630
MmeI	TCCRAC	3 cut(s)	352, 631, 713
MnlI	CCTC	6 cut(s)	67, 251, 408, 533, 536, 676
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	2 cut(s)	159, 338
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	460, 737
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	718
NheI	GCTAGC	1 cut(s)	386
NlaIII	CATG	4 cut(s)	10, 206, 370, 574
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	206
PciI	ACATGT	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	4 cut(s)	78, 209, 562, 662
PkrI	GCNGC	2 cut(s)	462, 628
PscI	ACATGT	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	352
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PstNI	CAGNNNCTG	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	460, 737
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	615
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	159, 338
SatI	GCNGC	2 cut(s)	461, 627
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	5 cut(s)	139, 190, 462, 702, 739
SfaNI	GCATC	3 cut(s)	115, 153, 339
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	3 cut(s)	13, 218, 337
SmoI	CTYRAG	3 cut(s)	13, 218, 337
SpeI	ACTAGT	1 cut(s)	637
Sse9I	AATT	4 cut(s)	52, 237, 448, 630
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	4 cut(s)	35, 189, 387, 638
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	494, 675, 746
TaqI	TCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	52, 237, 448, 630
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	4 cut(s)	78, 209, 562, 662
Tru1I	TTAA	2 cut(s)	159, 338
Tru9I	TTAA	2 cut(s)	159, 338
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	2 cut(s)	460, 626
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	5 cut(s)	87, 123, 498, 587, 743
Vha464I	CTTAAG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	1 cut(s)	206
XmaJI	CCTAGG	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	4 cut(s)	35, 189, 387, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.