AT1G10417

function whose expression is repressed by inoculation with Agrobacterium tumerifaciens

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005117
Physical Location & Seq
Reverse (-)
3424186 .. 3427531
3346 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10417.1

Sequence Viewer

Length: 1296 bp
ATGGAGATGCTCAAGTTGTCAAAATTCAAATTGCAGCTTCAGTCAATGATCGGAGAAGTGCGAGATCTGCGTGTAAGGAGAAAGAGGTTTCTATACATCTATGGATTGTGTATCTTCTTCGCTCCACCAGTTTCTCTCTTCTTCTTCTTCGTCTTCTTCCACTTTACTACCGGCGTTTTTGCAGGAAAGGGAGCGATCAGTCACAGATCACATTACTCTTGCGAATCAGGTTCTTCGATCAATAAACAGAAGCAAACGGAGGAGGACTGCATCAGGAAAGTGCAGGAGCTTCAAGCTGATTTAGCTTCTTCTAGAGAAACACAGGAGGCACTCGAGAGAAAGGTGAGTTATCTTCAGAACGACTATAGTTTGCTGGAAAACAAGCAGAGTGAATTGAAGACAACTATCCAAAATTTGCTTCAATCGCGAGAAAGTTTCTTAAATGCTTACCAGGAGTCGTTTTGTGAAATGAAGTGTTCAATTGAAGCCAGGGATAGGAAGATTCTCATGCTACATGAGAAGATAACCTCTCATCTTACGTTGTTTGATTCAATTGAAAAAGAGGCATCAGTAATTAAAAAGGTCATACATGAAGTTCAGGGCCTTGTGGATAAAAAAGAAGATGTAGTGACTGGCTTGAAAGAGAAAATGGACCATGTCTCTACTTATGAAAAAGTGTTTATAGAGAACATCAGAGCGTTAGAAGAGAAACTTAAATGCCATGAAACAGAACTGCAGAGCAAGGATAATATAATATCAGAGCTCTCCGCTCAGCTGGAATCAGAAAAGAGTAAAAATGAACATCAACATCAAGTCGAAGAGCTTCAGAAAACTTTGCAGGTCAAAGATTTAGCTGTAGAGAACTTAATTTCTGAAAAAGAGGCATTGTATTCTGAAATGAAGGGTTTGGAGATGATTTTACAGCGGATTCAGGAGTCTGTATCCCTTATGACTGAAGAGGATAGAAAGGTGTTTACATCAATACTGACATTCGAACAAGGTTCCGATGAGAGAAACAAAAGATCCAGGCACAATGACACAGTTGACAAAATGGAGGAACTTCTATATGTAGCTCCTGTTATGCATTCTCAAGAAAACTCAGTAAAAGTTATTCCATCAGCGTCTCCAAGGTGTCAGCACCAAAAAACAGACTGCAGATCGATACAAGATGATGATCATCAACTGGATTCGGCTGAGTACCTGCAGCATAACACTGTCAGTGGCCATTGGCAGAGTACTAATAACCACAACCACTTTGAGCTTGAGGCAATACAAAGAGTTGATGAACCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

431

Amino Acids

50.13

Weight (kDa)

5.75

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0242 PF06785 39 - 175 8.9e-06 Uncharacterised protein family (UPF0242) N-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 829, 1209
AccBSI CCGCTC 1 cut(s) 770
AccII CGCG 1 cut(s) 427
AciI CCGC 2 cut(s) 768, 925
AclWI GGATC 1 cut(s) 1017
AcoI YGGCCR 1 cut(s) 1222
AcsI RAATTY 2 cut(s) 23, 412
AcuI CTGAAG 4 cut(s) 23, 338, 809, 975
AfaI GTAC 2 cut(s) 1199, 1237
AfiI CCNNNNNNNGG 1 cut(s) 495
AgsI TTSAA 9 cut(s) 28, 293, 397, 422, 480, 485, 552, 557, 640
AjnI CCWGG 3 cut(s) 450, 488, 1025
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 2 cut(s) 664, 1128
AlwI GGATC 1 cut(s) 1017
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 601, 1222
ApeKI GCWGC 2 cut(s) 34, 1204
ApoI RAATTY 2 cut(s) 23, 412
Asp700I GAANNNNTTC 1 cut(s) 822
AspS9I GGNCC 2 cut(s) 601, 652
AsuHPI GGTGA 1 cut(s) 355
AsuII TTCGAA 1 cut(s) 993
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 652
BalI TGGCCA 1 cut(s) 1224
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 145, 404
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 46, 1216
BccI CCATC 1 cut(s) 1123
BciT130I CCWGG 3 cut(s) 452, 490, 1027
BciVI GTATCC 1 cut(s) 952
BclI TGATCA 1 cut(s) 1174
BcoDI GTCTC 2 cut(s) 664, 1128
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 5 cut(s) 364, 734, 855, 1153, 1202
BfuAI ACCTGC 2 cut(s) 829, 1209
BfuI GTATCC 1 cut(s) 952
BglII AGATCT 1 cut(s) 64
BisI GCNGC 2 cut(s) 35, 1205
BlpI GCTNAGC 1 cut(s) 771
BlsI GCNGC 2 cut(s) 36, 1206
BmcAI AGTACT 1 cut(s) 1237
Bme1390I CCNGG 3 cut(s) 452, 490, 1027
Bme18I GGWCC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 2 cut(s) 601, 652
BmiI GGNNCC 1 cut(s) 1003
BmrFI CCNGG 3 cut(s) 452, 490, 1027
BmsI GCATC 2 cut(s) 279, 575
BpiI GAAGAC 2 cut(s) 145, 404
Bpu1102I GCTNAGC 1 cut(s) 771
Bpu14I TTCGAA 1 cut(s) 993
BpuEI CTTGAG 2 cut(s) 1074, 1283
Bsa29I ATCGAT 1 cut(s) 1160
BsaBI GATNNNNATC 2 cut(s) 1173, 1176
BsaJI CCNNGG 2 cut(s) 489, 1127
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 3 cut(s) 128, 637, 1188
Bse8I GATNNNNATC 2 cut(s) 1173, 1176
BseBI CCWGG 3 cut(s) 452, 490, 1027
BseCI ATCGAT 1 cut(s) 1160
BseDI CCNNGG 2 cut(s) 489, 1127
BseJI GATNNNNATC 2 cut(s) 1173, 1176
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMII CTCAG 3 cut(s) 785, 1113, 1185
BseNI ACTGG 3 cut(s) 128, 637, 1188
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 46, 1216
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 427
BshFI GGCC 2 cut(s) 603, 1224
BshVI ATCGAT 1 cut(s) 1160
BsiHKAI GWGCWC 1 cut(s) 765
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 2 cut(s) 664, 1128
BsmBI CGTCTC 1 cut(s) 1128
BsmI GAATGC 1 cut(s) 1084
BsnI GGCC 2 cut(s) 603, 1224
BsoBI CYCGRG 1 cut(s) 332
Bsp119I TTCGAA 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
Bsp1720I GCTNAGC 1 cut(s) 771
Bsp68I TCGCGA 1 cut(s) 427
BspACI CCGC 2 cut(s) 768, 925
BspANI GGCC 2 cut(s) 603, 1224
BspCNI CTCAG 3 cut(s) 784, 1112, 1186
BspDI ATCGAT 1 cut(s) 1160
BspFNI CGCG 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 1003
BspMAI CTGCAG 3 cut(s) 738, 1157, 1206
BspMI ACCTGC 2 cut(s) 829, 1209
BspPI GGATC 1 cut(s) 1017
BspQI GCTCTTC 1 cut(s) 813
BspT104I TTCGAA 1 cut(s) 993
BsrBI CCGCTC 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 3 cut(s) 128, 637, 1188
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 489, 1127
BssMI GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
BssT1I CCWWGG 1 cut(s) 1127
Bst2UI CCWGG 3 cut(s) 452, 490, 1027
Bst4CI ACNGT 2 cut(s) 1042, 1216
Bst6I CTCTTC 4 cut(s) 143, 699, 813, 951
BstBI TTCGAA 1 cut(s) 993
BstDEI CTNAG 3 cut(s) 771, 1099, 1194
BstFNI CGCG 1 cut(s) 427
BstKTI GATC 8 cut(s) 51, 67, 198, 209, 240, 1025, 1160, 1177
BstMAI GTCTC 2 cut(s) 664, 1128
BstMBI GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
BstMWI GCNNNNNNNGC 3 cut(s) 67, 302, 424
BstNI CCWGG 3 cut(s) 452, 490, 1027
BstSCI CCNGG 3 cut(s) 450, 488, 1025
BstSFI CTRYAG 5 cut(s) 364, 734, 855, 1153, 1202
BstUI CGCG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 46, 1216
BstV2I GAAGAC 2 cut(s) 145, 404
BstX2I RGATCY 2 cut(s) 64, 1022
BstYI RGATCY 2 cut(s) 64, 1022
Bsu15I ATCGAT 1 cut(s) 1160
BsuI GTATCC 1 cut(s) 952
BsuRI GGCC 2 cut(s) 603, 1224
BsuTUI ATCGAT 1 cut(s) 1160
BtsIMutI CAGTG 2 cut(s) 1212, 1225
BtuMI TCGCGA 1 cut(s) 427
BveI ACCTGC 2 cut(s) 829, 1209
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 601, 652
ClaI ATCGAT 1 cut(s) 1160
CseI GACGC 1 cut(s) 1110
Csp6I GTAC 2 cut(s) 1198, 1236
CviAII CATG 5 cut(s) 508, 515, 590, 656, 722
CviQI GTAC 2 cut(s) 1198, 1236
DdeI CTNAG 3 cut(s) 771, 1099, 1194
DpnI GATC 8 cut(s) 50, 66, 197, 208, 239, 1024, 1159, 1176
DpnII GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
EaeI YGGCCR 1 cut(s) 1222
Eam1104I CTCTTC 4 cut(s) 143, 699, 813, 951
EarI CTCTTC 4 cut(s) 143, 699, 813, 951
Ecl136II GAGCTC 1 cut(s) 763
Eco130I CCWWGG 1 cut(s) 1127
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 763
Eco57I CTGAAG 4 cut(s) 23, 338, 809, 975
Eco88I CYCGRG 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 763
EcoO109I RGGNCCY 1 cut(s) 601
EcoRII CCWGG 3 cut(s) 450, 488, 1025
EcoT14I CCWWGG 1 cut(s) 1127
EcoT22I ATGCAT 1 cut(s) 1086
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 1 cut(s) 1127
Esp3I CGTCTC 1 cut(s) 1128
FaeI CATG 5 cut(s) 511, 518, 593, 659, 725
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FatI CATG 5 cut(s) 507, 514, 589, 655, 721
FbaI TGATCA 1 cut(s) 1174
Fnu4HI GCNGC 2 cut(s) 35, 1205
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 2 cut(s) 35, 1205
FspBI CTAG 1 cut(s) 312
GluI GCNGC 2 cut(s) 35, 1205
HaeIII GGCC 2 cut(s) 603, 1224
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 1110
Hin1II CATG 5 cut(s) 511, 518, 593, 659, 725
HincII GTYRAC 1 cut(s) 1045
HindII GTYRAC 1 cut(s) 1045
HinfI GANTC 8 cut(s) 224, 455, 502, 548, 779, 928, 935, 1187
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 975, 1045
Hpy188I TCNGA 9 cut(s) 53, 357, 695, 760, 784, 828, 874, 895, 1006
Hpy188III TCNNGA 6 cut(s) 274, 312, 334, 426, 932, 1091
Hpy8I GTNNAC 2 cut(s) 975, 1045
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 2 cut(s) 1042, 1216
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 9 cut(s) 34, 182, 270, 283, 736, 838, 1084, 1155, 1204
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 302, 424
HpyF3I CTNAG 3 cut(s) 771, 1099, 1194
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 5 cut(s) 511, 518, 593, 659, 725
Ksp22I TGATCA 1 cut(s) 1174
Kzo9I GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
LguI GCTCTTC 1 cut(s) 813
LmnI GCTCC 4 cut(s) 127, 191, 286, 1078
Lsp1109I GCAGC 2 cut(s) 46, 1216
LweI GCATC 2 cut(s) 279, 575
MaeI CTAG 1 cut(s) 312
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 2 cut(s) 200, 628
MalI GATC 8 cut(s) 50, 66, 197, 208, 239, 1024, 1159, 1176
MbiI CCGCTC 1 cut(s) 770
MboI GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
MfeI CAATTG 2 cut(s) 480, 552
MflI RGATCY 2 cut(s) 64, 1022
MhlI GDGCHC 1 cut(s) 765
MlsI TGGCCA 1 cut(s) 1224
MluCI AATT 8 cut(s) 23, 29, 392, 412, 480, 552, 573, 867
MluNI TGGCCA 1 cut(s) 1224
MlyI GAGTC 2 cut(s) 464, 944
Mox20I TGGCCA 1 cut(s) 1224
Mph1103I ATGCAT 1 cut(s) 1086
MroXI GAANNNNTTC 1 cut(s) 822
MscI TGGCCA 1 cut(s) 1224
MseI TTAA 4 cut(s) 440, 576, 714, 866
Msp20I TGGCCA 1 cut(s) 1224
MspA1I CMGCKG 2 cut(s) 775, 925
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 3 cut(s) 452, 490, 1027
MunI CAATTG 2 cut(s) 480, 552
Mva1269I GAATGC 1 cut(s) 1084
MvaI CCWGG 3 cut(s) 452, 490, 1027
MvnI CGCG 1 cut(s) 427
MwoI GCNNNNNNNGC 3 cut(s) 67, 302, 424
NdeII GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
NlaIII CATG 5 cut(s) 511, 518, 593, 659, 725
NlaIV GGNNCC 1 cut(s) 1003
NmuCI GTSAC 2 cut(s) 200, 628
NruI TCGCGA 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 1086
NspV TTCGAA 1 cut(s) 993
PaeR7I CTCGAG 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 813
PctI GAATGC 1 cut(s) 1084
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 6 cut(s) 224, 502, 548, 779, 928, 1187
PflFI GACNNNGTC 1 cut(s) 656
PkrI GCNGC 2 cut(s) 36, 1206
PleI GAGTC 2 cut(s) 463, 943
PpsI GAGTC 2 cut(s) 463, 943
Psp124BI GAGCTC 1 cut(s) 765
Psp6I CCWGG 3 cut(s) 450, 488, 1025
PspGI CCWGG 3 cut(s) 450, 488, 1025
PspN4I GGNNCC 1 cut(s) 1003
PspPI GGNCC 2 cut(s) 601, 652
PstI CTGCAG 3 cut(s) 738, 1157, 1206
PsuI RGATCY 2 cut(s) 64, 1022
PsyI GACNNNGTC 1 cut(s) 656
PvuII CAGCTG 1 cut(s) 775
RruI TCGCGA 1 cut(s) 427
RsaI GTAC 2 cut(s) 1199, 1237
RsaNI GTAC 2 cut(s) 1198, 1236
SacI GAGCTC 1 cut(s) 765
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 4 cut(s) 440, 576, 714, 866
SatI GCNGC 2 cut(s) 35, 1205
Sau3AI GATC 8 cut(s) 48, 64, 195, 206, 237, 1022, 1157, 1174
Sau96I GGNCC 2 cut(s) 601, 652
ScaI AGTACT 1 cut(s) 1237
SchI GAGTC 2 cut(s) 464, 944
ScrFI CCNGG 3 cut(s) 452, 490, 1027
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 2 cut(s) 279, 575
SfcI CTRYAG 5 cut(s) 364, 734, 855, 1153, 1202
Sfr274I CTCGAG 1 cut(s) 332
SfuI TTCGAA 1 cut(s) 993
SinI GGWCC 1 cut(s) 652
SlaI CTCGAG 1 cut(s) 332
SmlI CTYRAG 4 cut(s) 11, 332, 1089, 1262
SmoI CTYRAG 4 cut(s) 11, 332, 1089, 1262
Sse9I AATT 8 cut(s) 23, 29, 392, 412, 480, 552, 573, 867
SsiI CCGC 2 cut(s) 768, 925
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 450, 488, 1025
StyI CCWWGG 1 cut(s) 1127
TaaI ACNGT 2 cut(s) 1042, 1216
TaiI ACGT 1 cut(s) 542
TaqI TCGA 5 cut(s) 236, 333, 816, 993, 1160
TasI AATT 8 cut(s) 23, 29, 392, 412, 480, 552, 573, 867
TatI WGTACW 1 cut(s) 1235
TfiI GAWTC 6 cut(s) 224, 502, 548, 779, 928, 1187
Tru1I TTAA 4 cut(s) 440, 576, 714, 866
Tru9I TTAA 4 cut(s) 440, 576, 714, 866
TscAI CASTG 2 cut(s) 1219, 1225
TseFI GTSAC 2 cut(s) 200, 628
TseI GCWGC 2 cut(s) 34, 1204
Tsp45I GTSAC 2 cut(s) 200, 628
TspDTI ATGAA 6 cut(s) 485, 606, 684, 738, 813, 914
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 1219, 1225
Tth111I GACNNNGTC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 652
XapI RAATTY 2 cut(s) 23, 412
XbaI TCTAGA 1 cut(s) 311
XhoI CTCGAG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 1 cut(s) 312
ZrmI AGTACT 1 cut(s) 1237
Zsp2I ATGCAT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.