Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Reverse (-)

5804574 .. 5807640

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1083000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGTTGCTGAAATTCTCCAAATTCAAGCTCCAACTTCAAACTCTTATCTCCGAAGTCCGACAACTCCGAGAAAGGGAACGCTCCGCCGCCGAACAGCTCCGTCTTCTTATTCAGAAACAAAAGCAAACCGAGGAAGAATGCGGCCGGAAGTTGCAGGAATTGCTGGCGGAATTGGCTTCCTCCAATGAGCTGCGACAGAAACTCGAAAGAGAGGTGAGTTACCTTCAGAGTGACAATTCTATGCTCGAGAACAGGCAAAGGGAGTTGAAGGGAACGATTCATAACCTACTCCAGTCCAGGGAAAATTTCGTCAACGCTTATCAGGAATCCACTTGTGAAATGAAACGCTCGATTCAATGCGGGGACAGAAAGCTTGCTTTCCTATCTGAGAAGATAAAATCTCATCTTTTGCTATTCGATTCAATAGAAAAGGAGGCAATTTTGGTAAAGAAAGTTGTGGATAATGTGCAACGCGTTGTTATGGCAGGCTTAAAGAGCAAATTGGATACTGTTTCCACATTCGAGAAAGTATTTATTGAAAAGATCAGTGACCTGGAAAACAAACTAAAAAATTATGAAGACGAGACTCGGAGAAAGGATAAAGCCATCTCAGAACTAGAAGCTCAGATGGAGGCAGCAAAAATTTGTAATAGAAGCCAGACACAAATAGAAGATATATCCATGCATCAGAGATTCATTTGTCTTCTTAACCACCCTTACCTTCAAAAAGTTATATCAGCAAAGGATGCGGTCATACAGAATTTGATTTCAGAAAAACAGGCATTGCATTTTGAAGTTGGAAGTTTGGGGATTATCTTAAGGAGGATTCAGGACACTGTTAAAAGTATGAATGAAGAGGACAAAGGGGTATTTTCCTCAATTCTGGAACACCAAGGAGGATGCAATATGATTTTGACGAAGGAAGATAATAGGATTGAAGATGCAGTCCAGAAATATACAGGAAAATCTCAAGAAAAGGCTTACGGGTCTGGCGATGGAGGAAATACAGCTTCACATCTATCTCAAAAGTGCAAGTCAGCTGGGAACAACTTACAAGAGAACAATAACTTGGACTCATGCGTGTCAGAGGCAAGTGAATTTTACTGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

42.6

Weight (kDa)

6.7

Isoelectric Point (pI)

52.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	477
AciI	CCGC	6 cut(s)	87, 90, 144, 170, 363, 752
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	6 cut(s)	14, 23, 307, 645, 763, 1100
AcuI	CTGAAG	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	76, 301
AflII	CTTAAG	1 cut(s)	820
AflIII	ACRYGT	1 cut(s)	475
AgsI	TTSAA	9 cut(s)	28, 41, 271, 359, 426, 542, 728, 797, 941
AjnI	CCWGG	2 cut(s)	299, 555
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AluBI	AGCT	7 cut(s)	31, 100, 193, 376, 626, 1013, 1043
AluI	AGCT	7 cut(s)	31, 100, 193, 376, 626, 1013, 1043
Alw26I	GTCTC	1 cut(s)	581
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	2 cut(s)	193, 638
ApoI	RAATTY	6 cut(s)	14, 23, 307, 645, 763, 1100
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	248
BbsI	GAAGAC	3 cut(s)	98, 588, 698
BbvI	GCAGC	2 cut(s)	180, 650
BccI	CCATC	3 cut(s)	617, 625, 992
BciT130I	CCWGG	2 cut(s)	301, 557
BciVI	GTATCC	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	620
BfrI	CTTAAG	1 cut(s)	820
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	4 cut(s)	90, 145, 194, 639
BlsI	GCNGC	4 cut(s)	91, 146, 195, 640
Bme1390I	CCNGG	2 cut(s)	301, 557
BmeT110I	CYCGRG	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	301, 557
BmsI	GCATC	4 cut(s)	697, 739, 893, 934
BpiI	GAAGAC	3 cut(s)	98, 588, 698
BpmI	CTGGAG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	957
BsaJI	CCNNGG	3 cut(s)	132, 300, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 301
Bse1I	ACTGG	2 cut(s)	295, 1112
Bse3DI	GCAATG	1 cut(s)	785
BseBI	CCWGG	2 cut(s)	301, 557
BseDI	CCNNGG	3 cut(s)	132, 300, 895
BseGI	GGATG	2 cut(s)	754, 908
BseLI	CCNNNNNNNGG	2 cut(s)	76, 301
BseMI	GCAATG	1 cut(s)	785
BseMII	CTCAG	3 cut(s)	381, 627, 641
BseNI	ACTGG	2 cut(s)	295, 1112
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	180, 650
BseYI	CCCAGC	1 cut(s)	1043
Bsh1236I	CGCG	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	76, 301
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	546
BspACI	CCGC	6 cut(s)	87, 90, 144, 170, 363, 752
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	3 cut(s)	382, 626, 640
BspFNI	CGCG	1 cut(s)	477
BspTI	CTTAAG	1 cut(s)	820
BsrDI	GCAATG	1 cut(s)	785
BsrI	ACTGG	2 cut(s)	295, 1112
BssECI	CCNNGG	3 cut(s)	132, 300, 895
BssMI	GATC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	895
Bst2UI	CCWGG	2 cut(s)	301, 557
Bst4CI	ACNGT	2 cut(s)	514, 841
Bst6I	CTCTTC	1 cut(s)	852
BstAFI	CTTAAG	1 cut(s)	820
BstAPI	GCANNNNNTGC	2 cut(s)	163, 749
BstC8I	GCNNGC	3 cut(s)	168, 378, 490
BstDEI	CTNAG	3 cut(s)	390, 613, 627
BstF5I	GGATG	2 cut(s)	754, 908
BstFNI	CGCG	1 cut(s)	477
BstKTI	GATC	1 cut(s)	549
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	1 cut(s)	546
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 176, 498, 749
BstNI	CCWGG	2 cut(s)	301, 557
BstSCI	CCNGG	2 cut(s)	299, 555
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	180, 650
BstV2I	GAAGAC	3 cut(s)	98, 588, 698
BstZI	CGGCCG	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	1011
BtsCI	GGATG	2 cut(s)	754, 908
BtsIMutI	CAGTG	2 cut(s)	556, 837
Cac8I	GCNNGC	3 cut(s)	168, 378, 490
CviAII	CATG	2 cut(s)	685, 1080
DdeI	CTNAG	3 cut(s)	390, 613, 627
DpnI	GATC	1 cut(s)	548
DpnII	GATC	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
EciI	GGCGGA	2 cut(s)	76, 185
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	895
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	248
EcoRII	CCWGG	2 cut(s)	299, 555
EcoT14I	CCWWGG	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	895
FaeI	CATG	2 cut(s)	688, 1083
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	2 cut(s)	684, 1079
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	4 cut(s)	90, 145, 194, 639
FokI	GGATG	2 cut(s)	761, 915
Fsp4HI	GCNGC	4 cut(s)	90, 145, 194, 639
FspBI	CTAG	1 cut(s)	620
GluI	GCNGC	4 cut(s)	90, 145, 194, 639
GsaI	CCCAGC	1 cut(s)	1047
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	148
Hin1II	CATG	2 cut(s)	688, 1083
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	8 cut(s)	280, 329, 355, 422, 589, 696, 829, 1076
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	7 cut(s)	250, 326, 526, 833, 887, 952, 974
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	4 cut(s)	236, 265, 734, 916
HpyCH4III	ACNGT	2 cut(s)	514, 841
HpyCH4V	TGCA	7 cut(s)	157, 472, 688, 790, 906, 947, 1035
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 176, 498, 749
HpyF3I	CTNAG	3 cut(s)	390, 613, 627
Hsp92II	CATG	2 cut(s)	688, 1083
Kzo9I	GATC	1 cut(s)	546
LmnI	GCTCC	3 cut(s)	36, 89, 105
Lsp1109I	GCAGC	2 cut(s)	180, 650
LweI	GCATC	4 cut(s)	697, 739, 893, 934
MaeI	CTAG	1 cut(s)	620
MaeIII	GTNAC	3 cut(s)	221, 233, 551
MalI	GATC	1 cut(s)	548
MboI	GATC	1 cut(s)	546
MboII	GAAGA	9 cut(s)	98, 149, 406, 593, 686, 698, 869, 938, 953
MluI	ACGCGT	1 cut(s)	475
MlyI	GAGTC	2 cut(s)	583, 1070
MmeI	TCCRAC	3 cut(s)	58, 85, 781
Mph1103I	ATGCAT	1 cut(s)	690
MseI	TTAA	4 cut(s)	494, 711, 821, 843
MspA1I	CMGCKG	1 cut(s)	1043
MspCI	CTTAAG	1 cut(s)	820
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	2 cut(s)	301, 557
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	2 cut(s)	301, 557
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	163, 176, 498, 749
NdeII	GATC	1 cut(s)	546
NlaIII	CATG	2 cut(s)	688, 1083
NmuCI	GTSAC	2 cut(s)	233, 551
NsiI	ATGCAT	1 cut(s)	690
PaeR7I	CTCGAG	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	993
PctI	GAATGC	1 cut(s)	146
PfeI	GAWTC	6 cut(s)	280, 329, 355, 422, 696, 829
PkrI	GCNGC	4 cut(s)	91, 146, 195, 640
PleI	GAGTC	2 cut(s)	583, 1070
PpsI	GAGTC	2 cut(s)	583, 1070
Psp6I	CCWGG	2 cut(s)	299, 555
PspFI	CCCAGC	1 cut(s)	1043
PspGI	CCWGG	2 cut(s)	299, 555
PvuII	CAGCTG	1 cut(s)	1043
SaqAI	TTAA	4 cut(s)	494, 711, 821, 843
SatI	GCNGC	4 cut(s)	90, 145, 194, 639
Sau3AI	GATC	1 cut(s)	546
SchI	GAGTC	2 cut(s)	583, 1070
ScrFI	CCNGG	2 cut(s)	301, 557
SfaNI	GCATC	4 cut(s)	697, 739, 893, 934
Sfr274I	CTCGAG	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	248, 820, 972
SmoI	CTYRAG	3 cut(s)	248, 820, 972
SsiI	CCGC	6 cut(s)	87, 90, 144, 170, 363, 752
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	299, 555
StyI	CCWWGG	1 cut(s)	895
TaaI	ACNGT	2 cut(s)	514, 841
TaqI	TCGA	5 cut(s)	207, 249, 353, 420, 525
TauI	GCSGC	2 cut(s)	92, 147
TfiI	GAWTC	6 cut(s)	280, 329, 355, 422, 696, 829
Tru1I	TTAA	4 cut(s)	494, 711, 821, 843
Tru9I	TTAA	4 cut(s)	494, 711, 821, 843
TscAI	CASTG	2 cut(s)	556, 844
TseFI	GTSAC	2 cut(s)	233, 551
TseI	GCWGC	2 cut(s)	193, 638
Tsp45I	GTSAC	2 cut(s)	233, 551
TspDTI	ATGAA	6 cut(s)	272, 359, 594, 688, 866, 870
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	2 cut(s)	556, 844
Vha464I	CTTAAG	1 cut(s)	820
XapI	RAATTY	6 cut(s)	14, 23, 307, 645, 763, 1100
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	1 cut(s)	620
Zsp2I	ATGCAT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.