RchiOBHm_Chr4g0445111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005117
Physical Location & Seq
Forward (+)
65674276 .. 65676202
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41271

Sequence Viewer

Length: 720 bp
ATGGACCATTTCGGAGAGAGAATGGGGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACTGCCGGAAGTTGCAGGAATTTCAAGCCGAATTTGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGGGAGGTTAGTTACCTTCAGGATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCAATGCTTATGAGGAATCCACCTGTGAGATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATAGAAAAGGAGGCAATTTCTGTAAAGAAAGTTGTGGATCATGTGCAACACCTTGTGAGTGAGAAAGAGGAAATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCGGAACTAGACTCGCAGCTTGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGATATCCAGACCAGTGTTTAATACTCATTTGTTTGGCTGGTTCTCAAATATGGCTTACTCTTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

28.33

Weight (kDa)

6.68

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 2 cut(s) 182, 194
AcuI CTGAAG 3 cut(s) 233, 299, 311
AdeI CACNNNGTG 1 cut(s) 502
AfiI CCNNNNNNNGG 2 cut(s) 97, 235
AgsI TTSAA 3 cut(s) 49, 188, 380
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 5 cut(s) 52, 58, 214, 289, 604
AluI AGCT 5 cut(s) 52, 58, 214, 289, 604
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 381, 554
AlwI GGATC 1 cut(s) 492
ApeKI GCWGC 2 cut(s) 601, 611
ApoI RAATTY 2 cut(s) 182, 194
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 613, 623
BciT130I CCWGG 1 cut(s) 530
BcoDI GTCTC 2 cut(s) 381, 554
BfaI CTAG 1 cut(s) 593
BisI GCNGC 2 cut(s) 602, 612
BlsI GCNGC 2 cut(s) 603, 613
Bme1390I CCNGG 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 2 cut(s) 38, 290
BpuEI CTTGAG 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 235
Bse1I ACTGG 1 cut(s) 662
BseBI CCWGG 1 cut(s) 530
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 97, 235
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 662
BseXI GCAGC 2 cut(s) 613, 623
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 169, 217
BslI CCNNNNNNNGG 2 cut(s) 97, 235
BsmAI GTCTC 2 cut(s) 381, 554
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 62, 484
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 534
BspPI GGATC 1 cut(s) 492
BsrI ACTGG 1 cut(s) 662
BssMI GATC 2 cut(s) 62, 484
Bst2UI CCWGG 1 cut(s) 530
Bst6I CTCTTC 1 cut(s) 642
BstDEI CTNAG 2 cut(s) 321, 542
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 65, 487
BstMAI GTCTC 2 cut(s) 381, 554
BstMBI GATC 2 cut(s) 62, 484
BstMWI GCNNNNNNNGC 2 cut(s) 197, 286
BstNI CCWGG 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 613, 623
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 488
CviJI RGCY 9 cut(s) 52, 58, 191, 214, 289, 309, 604, 687, 704
CviKI_1 RGCY 9 cut(s) 52, 58, 191, 214, 289, 309, 604, 687, 704
DdeI CTNAG 2 cut(s) 321, 542
DpnI GATC 2 cut(s) 64, 486
DpnII GATC 2 cut(s) 62, 484
DraIII CACNNNGTG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 3 cut(s) 233, 299, 311
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 528
EcoRV GATATC 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 1 cut(s) 491
FaiI YATR 5 cut(s) 306, 345, 489, 552, 701
FatI CATG 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 602, 612
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 602, 612
FspBI CTAG 1 cut(s) 593
GluI GCNGC 2 cut(s) 602, 612
GsuI CTGGAG 2 cut(s) 38, 290
HapII CCGG 2 cut(s) 169, 217
Hin1II CATG 1 cut(s) 491
HinfI GANTC 6 cut(s) 301, 350, 443, 562, 596, 637
HpaII CCGG 2 cut(s) 169, 217
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 8 cut(s) 14, 62, 83, 92, 138, 412, 567, 589
Hpy188III TCNNGA 2 cut(s) 251, 657
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 257, 286, 540
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 178, 374, 384, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 286
HpyF3I CTNAG 2 cut(s) 321, 542
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 491
Kzo9I GATC 2 cut(s) 62, 484
LmnI GCTCC 4 cut(s) 57, 63, 110, 219
Lsp1109I GCAGC 2 cut(s) 613, 623
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 593
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 2 cut(s) 242, 524
MalI GATC 2 cut(s) 64, 486
MboI GATC 2 cut(s) 62, 484
MboII GAAGA 4 cut(s) 119, 170, 427, 659
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 7 cut(s) 182, 194, 259, 375, 396, 462, 618
MlyI GAGTC 3 cut(s) 556, 590, 631
MnlI CCTC 6 cut(s) 214, 229, 340, 451, 508, 601
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 3 cut(s) 621, 669, 714
MspI CCGG 2 cut(s) 169, 217
MspR9I CCNGG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 2 cut(s) 197, 286
NdeII GATC 2 cut(s) 62, 484
NlaIII CATG 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 301, 350, 443
PkrI GCNGC 2 cut(s) 603, 613
PleI GAGTC 3 cut(s) 556, 590, 631
PpsI GAGTC 3 cut(s) 556, 590, 631
PshBI ATTAAT 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspPI GGNCC 1 cut(s) 4
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 621, 669, 714
SatI GCNGC 2 cut(s) 602, 612
Sau3AI GATC 2 cut(s) 62, 484
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 3 cut(s) 556, 590, 631
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 436
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 7 cut(s) 182, 194, 259, 375, 396, 462, 618
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 593
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 528
TaiI ACGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 446
TasI AATT 7 cut(s) 182, 194, 259, 375, 396, 462, 618
TfiI GAWTC 3 cut(s) 301, 350, 443
Tru1I TTAA 3 cut(s) 621, 669, 714
Tru9I TTAA 3 cut(s) 621, 669, 714
TscAI CASTG 1 cut(s) 669
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 2 cut(s) 601, 611
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 4 cut(s) 113, 171, 293, 380
TspRI CASTG 1 cut(s) 669
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 2 cut(s) 182, 194
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.