Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Forward (+)

63320012 .. 63326320

Gene Structure 6309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG427800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGACCATTTCGGAGAGAGAATGGGGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACTGCCGGAAGTTGCAGGAATTTCAAGCCGAATTTGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGGGAGGTTAGTTACCTTCAGGATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCAATGCTTATGAGGAATCCACCTGTGAGATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATAGAAAAGGAGGCAATTTCTGTAAAGAAAGTTGTGGATCATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGTGGCTGGATTACAGAGCAAAATGGATACTGTTTCCACATTTGAGAAAGTATTTATTGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCGGAACTAGACTCGCAGCTTGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGCTTCAGAAAATTATATCAGCAAAGGATGTGGTCATACAGAACTTGATTTCAGAAAAACAGGGATTGCATTTTGAAGTTGGTAGTTTGGGCACAATATTAAGGAAGATTCAAGACACTATTAGAAGTATGAATCAAGAGGACAAACGGCTATTCTCCTCAATATTGGAACACCAACAAGGATGCAATATGATTTTGGTGAAGGAAGATAATAGGATTGAAGATGCAATCCAGAAAAATATAGACAAAGCTCATGAAAAGGATTACAAGGCAGCCGCAGGAGGAAACACAGCTTCACCTCTATCTCAAAAGGGCAAGTCAGTTAGCAACAACTTAGAAGAGAACAATAACTTGAACTCCTGCGTGTCAGAGTTTCACTGTTCTTCTCCACAGACAGCTTCGTCAAACCCTCAATTGCGAGCTACTGTCCTAAGTGTTCTATCAAATGATATAAAGGGTAACTGCATAGTATCAACGCATATAGAATCAGAATGCTCATCTACTCAAGCTGAAATCTCACACAATCGAAATGAGGTTCATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

419

Amino Acids

47.96

Weight (kDa)

6.27

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1114
AciI	CCGC	2 cut(s)	108, 990
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	182, 194
AcuI	CTGAAG	4 cut(s)	233, 299, 311, 704
AdeI	CACNNNGTG	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	97, 235
AgsI	TTSAA	7 cut(s)	49, 188, 380, 791, 827, 935, 1069
AjnI	CCWGG	1 cut(s)	594
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	381, 620
AlwI	GGATC	1 cut(s)	492
ApeKI	GCWGC	3 cut(s)	667, 677, 986
ApoI	RAATTY	2 cut(s)	182, 194
AseI	ATTAAT	1 cut(s)	687
Asp700I	GAANNNNTTC	2 cut(s)	120, 717
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	64, 925, 1002
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	3 cut(s)	679, 689, 998
BceAI	ACGGC	1 cut(s)	878
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	381, 620
BfaI	CTAG	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	4 cut(s)	668, 678, 987, 990
BlsI	GCNGC	4 cut(s)	669, 679, 988, 991
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	436, 887, 928
BpmI	CTGGAG	2 cut(s)	38, 290
BpuEI	CTTGAG	2 cut(s)	692, 1203
BsaXI	ACNNNNNCTCC	2 cut(s)	1055, 1085
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 235
BseBI	CCWGG	1 cut(s)	596
BseGI	GGATG	3 cut(s)	259, 748, 902
BseLI	CCNNNNNNNGG	2 cut(s)	97, 235
BseMII	CTCAG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	862
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	3 cut(s)	679, 689, 998
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	169, 217
BslI	CCNNNNNNNGG	2 cut(s)	97, 235
BsmAI	GTCTC	2 cut(s)	381, 620
BsmI	GAATGC	1 cut(s)	1211
Bsp1286I	GDGCHC	2 cut(s)	216, 809
Bsp143I	GATC	3 cut(s)	62, 484, 585
BspACI	CCGC	2 cut(s)	108, 990
BspCNI	CTCAG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	967
BspPI	GGATC	1 cut(s)	492
BspQI	GCTCTTC	1 cut(s)	708
BssMI	GATC	3 cut(s)	62, 484, 585
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	553, 1094, 1141
Bst6I	CTCTTC	2 cut(s)	708, 1047
BstC8I	GCNNGC	1 cut(s)	1134
BstDEI	CTNAG	4 cut(s)	321, 608, 1048, 1145
BstF5I	GGATG	3 cut(s)	259, 748, 902
BstKTI	GATC	3 cut(s)	65, 487, 588
BstMAI	GTCTC	2 cut(s)	381, 620
BstMBI	GATC	3 cut(s)	62, 484, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 286
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	3 cut(s)	679, 689, 998
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	259, 748, 902
BtsIMutI	CAGTG	1 cut(s)	1090
Cac8I	GCNNGC	1 cut(s)	1134
CciI	TCATGA	1 cut(s)	967
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	726, 761
CviAII	CATG	3 cut(s)	488, 968, 1253
DdeI	CTNAG	4 cut(s)	321, 608, 1048, 1145
DpnI	GATC	3 cut(s)	64, 486, 587
DpnII	GATC	3 cut(s)	62, 484, 585
DraIII	CACNNNGTG	1 cut(s)	502
DrdI	GACNNNNNNGTC	1 cut(s)	1114
DseDI	GACNNNNNNGTC	1 cut(s)	1114
Eam1104I	CTCTTC	2 cut(s)	708, 1047
EarI	CTCTTC	2 cut(s)	708, 1047
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	4 cut(s)	233, 299, 311, 704
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	3 cut(s)	491, 971, 1256
FatI	CATG	3 cut(s)	487, 967, 1252
Fnu4HI	GCNGC	4 cut(s)	668, 678, 987, 990
FokI	GGATG	3 cut(s)	266, 755, 909
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	668, 678, 987, 990
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	4 cut(s)	668, 678, 987, 990
GsuI	CTGGAG	2 cut(s)	38, 290
HapII	CCGG	2 cut(s)	169, 217
Hin1II	CATG	3 cut(s)	491, 971, 1256
HinfI	GANTC	9 cut(s)	301, 350, 443, 628, 662, 703, 823, 847, 1199
HpaII	CCGG	2 cut(s)	169, 217
HphI	GGTGA	3 cut(s)	64, 925, 1002
Hpy188III	TCNNGA	5 cut(s)	251, 827, 851, 946, 968
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	257, 286, 606, 910
HpyCH4III	ACNGT	3 cut(s)	553, 1094, 1141
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	8 cut(s)	178, 374, 384, 493, 784, 900, 941, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 286
HpyF3I	CTNAG	4 cut(s)	321, 608, 1048, 1145
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	491, 971, 1256
Kzo9I	GATC	3 cut(s)	62, 484, 585
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	4 cut(s)	57, 63, 110, 219
Lsp1109I	GCAGC	3 cut(s)	679, 689, 998
LweI	GCATC	3 cut(s)	436, 887, 928
MaeI	CTAG	1 cut(s)	659
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	3 cut(s)	242, 590, 1172
MalI	GATC	3 cut(s)	64, 486, 587
MboI	GATC	3 cut(s)	62, 484, 585
MfeI	CAATTG	1 cut(s)	1127
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	216, 809
MluCI	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 726, 1127
MlyI	GAGTC	3 cut(s)	622, 656, 697
MroXI	GAANNNNTTC	2 cut(s)	120, 717
MseI	TTAA	2 cut(s)	687, 815
MspI	CCGG	2 cut(s)	169, 217
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	1127
Mva1269I	GAATGC	1 cut(s)	1211
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	197, 286
NdeII	GATC	3 cut(s)	62, 484, 585
NlaIII	CATG	3 cut(s)	491, 971, 1256
NmuCI	GTSAC	1 cut(s)	590
PagI	TCATGA	1 cut(s)	967
PciSI	GCTCTTC	1 cut(s)	708
PctI	GAATGC	1 cut(s)	1211
PdmI	GAANNNNTTC	2 cut(s)	120, 717
PfeI	GAWTC	6 cut(s)	301, 350, 443, 823, 847, 1199
PkrI	GCNGC	4 cut(s)	669, 679, 988, 991
PleI	GAGTC	3 cut(s)	622, 656, 697
PpsI	GAGTC	3 cut(s)	622, 656, 697
PshBI	ATTAAT	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	2 cut(s)	687, 815
SatI	GCNGC	4 cut(s)	668, 678, 987, 990
Sau3AI	GATC	3 cut(s)	62, 484, 585
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	622, 656, 697
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	216, 809
SfaNI	GCATC	3 cut(s)	436, 887, 928
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	671, 1218
SmoI	CTYRAG	2 cut(s)	671, 1218
Sse9I	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 726, 1127
SsiI	CCGC	2 cut(s)	108, 990
SspI	AATATT	2 cut(s)	813, 879
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	553, 1094, 1141
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	446, 1240
TasI	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 726, 1127
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	6 cut(s)	301, 350, 443, 823, 847, 1199
Tru1I	TTAA	2 cut(s)	687, 815
Tru9I	TTAA	2 cut(s)	687, 815
TscAI	CASTG	1 cut(s)	1097
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	3 cut(s)	667, 677, 986
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	7 cut(s)	113, 171, 293, 380, 860, 984, 1241
TspRI	CASTG	1 cut(s)	1097
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	2 cut(s)	182, 194
XmnI	GAANNNNTTC	2 cut(s)	120, 717
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.