Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Forward (+)

62827798 .. 62832801

Gene Structure 5004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGACCATTTCGGAGAGAGAATGGAGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACTGCCGGAAGTTGCAGGAATTTCAAGCCGAATTAGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGAGAGGTTAGTTACCTTCAGGATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCAATGCTTATGAGGAATCCACCTGTGAGATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTACCGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATAGAAAAGGAGGCAATTTCTGTAAAGAAAGTTGTGGATCATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGTGGCTGGATTACAGAGCAAAATGGATACTGTTTCCACATTTGAGAAAGTATTTATTGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGCGAAAGGATAAAGTCATTTCGGAACTAGACTCGCAGCTCGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGATATCCAGACCAAAAATTATATCAGCAAAGGATGTGGTCATACAGAACTTGATTTCAGAAAAACAGGGATTGCATTTTGAAGTTGGAAGTTTGGGCACAATATTAAGGAAGATTCAAGACACTATTAGAAGTATGAATCAAGAGGACAAACGGCTATTCTCCTCAATATTGGAACACCAACAAGGATGCAATATGATTTTGGTGAAGGAAGATAATAGGATTGAAGATGCAATCCAGAAAAATATAGACAAAGCTCATGAAAGGATTACAGGGCAGCCGCAGGAGGAAACACAGGTTTTGCTACTTTGTGCAGCTTCACCTCTATCTCAAAAGGGCAAGTCAGTTAGCAACAACTTAGAAGAGAACAATAACTTGGACTCCTGTGTGTCAGAGGTAAGTGAACTTTCAAAGTTGCAAGATGAGAAACTTAATTGGTTATTCTATGTTGACTTCGTGTCTAGGGTAGACCCACCTAAATCTTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

46.56

Weight (kDa)

5.79

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1182
AciI	CCGC	2 cut(s)	108, 995
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	182
AcuI	CTGAAG	3 cut(s)	233, 299, 311
AdeI	CACNNNGTG	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	97, 235
AgsI	TTSAA	7 cut(s)	49, 188, 380, 797, 833, 941, 1125
AhdI	GACNNNNNGTC	1 cut(s)	1171
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AluBI	AGCT	8 cut(s)	52, 58, 200, 214, 289, 670, 971, 1031
AluI	AGCT	8 cut(s)	52, 58, 200, 214, 289, 670, 971, 1031
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	381, 620
AlwI	GGATC	1 cut(s)	492
Ama87I	CYCGRG	1 cut(s)	671
ApeKI	GCWGC	4 cut(s)	667, 677, 991, 1028
ApoI	RAATTY	1 cut(s)	182
AseI	ATTAAT	1 cut(s)	687
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	3 cut(s)	64, 931, 1026
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	815
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	679, 689, 1003, 1040
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	2 cut(s)	381, 620
BfaI	CTAG	2 cut(s)	659, 1176
BfuI	GTATCC	1 cut(s)	541
BglII	AGATCT	1 cut(s)	585
BisI	GCNGC	5 cut(s)	668, 678, 992, 995, 1029
BlsI	GCNGC	5 cut(s)	669, 679, 993, 996, 1030
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	1171
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	436, 893, 934
BpmI	CTGGAG	2 cut(s)	38, 290
BsaXI	ACNNNNNCTCC	2 cut(s)	1079, 1109
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 235
BseBI	CCWGG	1 cut(s)	596
BseGI	GGATG	3 cut(s)	259, 754, 908
BseLI	CCNNNNNNNGG	2 cut(s)	97, 235
BseMII	CTCAG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	868
BseSI	GKGCMC	1 cut(s)	815
BseXI	GCAGC	4 cut(s)	679, 689, 1003, 1040
BsgI	GTGCAG	1 cut(s)	1047
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	169, 217
BslI	CCNNNNNNNGG	2 cut(s)	97, 235
BsmAI	GTCTC	2 cut(s)	381, 620
BsoBI	CYCGRG	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	216, 815
Bsp143I	GATC	3 cut(s)	62, 484, 585
BspACI	CCGC	2 cut(s)	108, 995
BspCNI	CTCAG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	973
BspPI	GGATC	1 cut(s)	492
BssMI	GATC	3 cut(s)	62, 484, 585
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	2 cut(s)	403, 553
Bst6I	CTCTTC	2 cut(s)	708, 1071
BstDEI	CTNAG	3 cut(s)	321, 608, 1072
BstF5I	GGATG	3 cut(s)	259, 754, 908
BstKTI	GATC	3 cut(s)	65, 487, 588
BstMAI	GTCTC	2 cut(s)	381, 620
BstMBI	GATC	3 cut(s)	62, 484, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 286
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	815
BstV1I	GCAGC	4 cut(s)	679, 689, 1003, 1040
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuI	GTATCC	1 cut(s)	541
BtsCI	GGATG	3 cut(s)	259, 754, 908
CciI	TCATGA	1 cut(s)	973
Cfr13I	GGNCC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	732, 767
CviAII	CATG	2 cut(s)	488, 974
DdeI	CTNAG	3 cut(s)	321, 608, 1072
DpnI	GATC	3 cut(s)	64, 486, 587
DpnII	GATC	3 cut(s)	62, 484, 585
DraIII	CACNNNGTG	1 cut(s)	502
DriI	GACNNNNNGTC	1 cut(s)	1171
Eam1104I	CTCTTC	2 cut(s)	708, 1071
Eam1105I	GACNNNNNGTC	1 cut(s)	1171
EarI	CTCTTC	2 cut(s)	708, 1071
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	3 cut(s)	233, 299, 311
Eco88I	CYCGRG	1 cut(s)	671
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	2 cut(s)	491, 977
FatI	CATG	2 cut(s)	487, 973
FblI	GTMKAC	1 cut(s)	1182
Fnu4HI	GCNGC	5 cut(s)	668, 678, 992, 995, 1029
FokI	GGATG	3 cut(s)	266, 761, 915
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	5 cut(s)	668, 678, 992, 995, 1029
FspBI	CTAG	2 cut(s)	659, 1176
GluI	GCNGC	5 cut(s)	668, 678, 992, 995, 1029
GsuI	CTGGAG	2 cut(s)	38, 290
HapII	CCGG	2 cut(s)	169, 217
Hin1II	CATG	2 cut(s)	491, 977
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HinfI	GANTC	9 cut(s)	301, 350, 443, 628, 662, 703, 829, 853, 1094
HpaII	CCGG	2 cut(s)	169, 217
HphI	GGTGA	3 cut(s)	64, 931, 1026
Hpy166II	GTNNAC	3 cut(s)	1118, 1165, 1183
Hpy188I	TCNGA	9 cut(s)	14, 62, 83, 92, 138, 412, 655, 775, 1108
Hpy188III	TCNNGA	6 cut(s)	251, 723, 833, 857, 952, 974
Hpy8I	GTNNAC	3 cut(s)	1118, 1165, 1183
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	257, 286, 606, 916
HpyCH4III	ACNGT	2 cut(s)	403, 553
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	9 cut(s)	178, 374, 384, 493, 790, 906, 947, 1028, 1132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 286
HpyF3I	CTNAG	3 cut(s)	321, 608, 1072
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	491, 977
Kzo9I	GATC	3 cut(s)	62, 484, 585
LmnI	GCTCC	4 cut(s)	57, 63, 110, 219
Lsp1109I	GCAGC	4 cut(s)	679, 689, 1003, 1040
LweI	GCATC	3 cut(s)	436, 893, 934
MaeI	CTAG	2 cut(s)	659, 1176
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	242, 590
MalI	GATC	3 cut(s)	64, 486, 587
MboI	GATC	3 cut(s)	62, 484, 585
MboII	GAAGA	9 cut(s)	119, 170, 427, 595, 725, 838, 938, 953, 1088
MflI	RGATCY	1 cut(s)	585
MhlI	GDGCHC	2 cut(s)	216, 815
MluCI	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 732, 1147
MlyI	GAGTC	4 cut(s)	622, 656, 697, 1088
MmeI	TCCRAC	1 cut(s)	781
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	687, 821, 1146
MspI	CCGG	2 cut(s)	169, 217
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	197, 286
NdeII	GATC	3 cut(s)	62, 484, 585
NlaIII	CATG	2 cut(s)	491, 977
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	671
PagI	TCATGA	1 cut(s)	973
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	5 cut(s)	301, 350, 443, 829, 853
PkrI	GCNGC	5 cut(s)	669, 679, 993, 996, 1030
PleI	GAGTC	4 cut(s)	622, 656, 697, 1088
PpsI	GAGTC	4 cut(s)	622, 656, 697, 1088
PshBI	ATTAAT	1 cut(s)	687
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	585
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	687, 821, 1146
SatI	GCNGC	5 cut(s)	668, 678, 992, 995, 1029
Sau3AI	GATC	3 cut(s)	62, 484, 585
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	4 cut(s)	622, 656, 697, 1088
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	2 cut(s)	216, 815
SfaNI	GCATC	3 cut(s)	436, 893, 934
Sfr274I	CTCGAG	1 cut(s)	671
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 732, 1147
SsiI	CCGC	2 cut(s)	108, 995
SspI	AATATT	2 cut(s)	819, 885
SspMI	CTAG	2 cut(s)	659, 1176
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	594
TaaI	ACNGT	2 cut(s)	403, 553
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	446, 672
TasI	AATT	9 cut(s)	182, 194, 259, 375, 396, 462, 684, 732, 1147
TauI	GCSGC	1 cut(s)	997
TfiI	GAWTC	5 cut(s)	301, 350, 443, 829, 853
Tru1I	TTAA	3 cut(s)	687, 821, 1146
Tru9I	TTAA	3 cut(s)	687, 821, 1146
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	4 cut(s)	667, 677, 991, 1028
Tsp45I	GTSAC	1 cut(s)	590
TspDTI	ATGAA	6 cut(s)	113, 171, 293, 380, 866, 990
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	687
XapI	RAATTY	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	1182
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	659, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.