Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Reverse (-)

1570202 .. 1573775

Gene Structure 3574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGAGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACGGCCGGAAGTTGCAGGAATTTCAAGCCGAATTAGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGAGAGGTTAGTTACCTTCAGAATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAGAATTTCGTCAATGCTTATGAGGAATCCACCTGTGAAATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATAGAAAAGGAGGCAATTTCCGTAAAGAAAGTTGTGGATGATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGTGGCTGGATTAAAGAGCAAAATGGATACTGTTTCCACATTTGAGAAAGTATTTATTGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCGGAACTAGAGTCACAGCTCGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGATATCCAGACCAAAAATTATATCAGCAAAGGATGTGGTCATACAGAACTTGATTTCAGAAAAACAGGGATTGCATTTTGAAGTTGGAAGTTTGGGCACAATATTAAGGAAGATTCAAGACACTATTAGAAGTATGAATCAAGAGGACAAACGGGTATTATCCTCAATATTGGAACACCAACAAGGATGCAATATGATTTTGGTGAGGGAAGATAATAGGATTGAAGATGCAATCCAGAAAAATATAGACAAAGCTCATGAAAAGGATTACAGGGCACCCGGAAACACAGGTTTTAATGTAAAGGATATTCTTCTTCTTCAATTAAATCGGCAGTTTCACTGTTCTTCTCCACAGACAGCTTCGTCAAACCCTCAATTGCGAGCTACCATCCTAAGTGTTCTATCAAATGATATAAAGGGTAACTGCACAGTATCAACGCATATAGAATCAGAATGCTCATCTACTCAAGCTGAAATCTCACACAATCGAAATGAGGTTCATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

401

Amino Acids

46.11

Weight (kDa)

6.86

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1057
AccB1I	GGYRCC	1 cut(s)	970
AciI	CCGC	1 cut(s)	87
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	161, 307
AcuI	CTGAAG	3 cut(s)	212, 278, 290
AdeI	CACNNNGTG	1 cut(s)	481
AfiI	CCNNNNNNNGG	2 cut(s)	76, 214
AgsI	TTSAA	7 cut(s)	28, 167, 359, 776, 812, 920, 1016
AjnI	CCWGG	1 cut(s)	573
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	360, 599
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	656
ApoI	RAATTY	2 cut(s)	161, 307
AseI	ATTAAT	1 cut(s)	666
Asp700I	GAANNNNTTC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	2 cut(s)	43, 910
AvaI	CYCGRG	1 cut(s)	650
BaeGI	GKGCMC	2 cut(s)	794, 973
BanI	GGYRCC	1 cut(s)	970
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	668
BccI	CCATC	1 cut(s)	1091
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	975
BcoDI	GTCTC	2 cut(s)	360, 599
BfaI	CTAG	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	564
BisI	GCNGC	1 cut(s)	657
BlsI	GCNGC	1 cut(s)	658
Bme1390I	CCNGG	2 cut(s)	575, 975
BmeT110I	CYCGRG	1 cut(s)	650
BmiI	GGNNCC	1 cut(s)	972
BmrFI	CCNGG	2 cut(s)	575, 975
BmsI	GCATC	3 cut(s)	415, 872, 913
BpmI	CTGGAG	2 cut(s)	17, 269
BpuEI	CTTGAG	1 cut(s)	1146
BpuMI	CCSGG	1 cut(s)	975
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 214
BseBI	CCWGG	1 cut(s)	575
BseGI	GGATG	4 cut(s)	469, 733, 887, 1083
BseLI	CCNNNNNNNGG	2 cut(s)	76, 214
BseMII	CTCAG	1 cut(s)	578
BseSI	GKGCMC	2 cut(s)	794, 973
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	668
BsgI	GTGCAG	1 cut(s)	1105
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	970
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	3 cut(s)	148, 196, 975
BslI	CCNNNNNNNGG	2 cut(s)	76, 214
BsmAI	GTCTC	2 cut(s)	360, 599
BsmI	GAATGC	1 cut(s)	1154
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	3 cut(s)	195, 794, 973
Bsp143I	GATC	2 cut(s)	41, 564
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	952
BspLI	GGNNCC	1 cut(s)	972
BspT107I	GGYRCC	1 cut(s)	970
BssMI	GATC	2 cut(s)	41, 564
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	532, 1037, 1126
Bst6I	CTCTTC	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	1077
BstDEI	CTNAG	3 cut(s)	300, 587, 1088
BstF5I	GGATG	4 cut(s)	469, 733, 887, 1083
BstKTI	GATC	2 cut(s)	44, 567
BstMAI	GTCTC	2 cut(s)	360, 599
BstMBI	GATC	2 cut(s)	41, 564
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 265
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	573, 973
BstSLI	GKGCMC	2 cut(s)	794, 973
BstV1I	GCAGC	1 cut(s)	668
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BstZI	CGGCCG	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	4 cut(s)	469, 733, 887, 1083
BtsIMutI	CAGTG	1 cut(s)	1033
Cac8I	GCNNGC	1 cut(s)	1077
CciI	TCATGA	1 cut(s)	952
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	2 cut(s)	953, 1196
DdeI	CTNAG	3 cut(s)	300, 587, 1088
DpnI	GATC	2 cut(s)	43, 566
DpnII	GATC	2 cut(s)	41, 564
DraIII	CACNNNGTG	1 cut(s)	481
DrdI	GACNNNNNNGTC	1 cut(s)	1057
DseDI	GACNNNNNNGTC	1 cut(s)	1057
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
EciI	GGCGGA	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	193
EclXI	CGGCCG	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	195
Eco32I	GATATC	1 cut(s)	699
Eco52I	CGGCCG	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	3 cut(s)	212, 278, 290
Eco88I	CYCGRG	1 cut(s)	650
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	2 cut(s)	956, 1199
FatI	CATG	2 cut(s)	952, 1195
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	4 cut(s)	476, 740, 894, 1070
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	657
FspBI	CTAG	1 cut(s)	638
GluI	GCNGC	1 cut(s)	657
GsuI	CTGGAG	2 cut(s)	17, 269
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	148, 196, 975
Hin1II	CATG	2 cut(s)	956, 1199
HinfI	GANTC	9 cut(s)	280, 329, 422, 607, 641, 682, 808, 832, 1142
HpaII	CCGG	3 cut(s)	148, 196, 975
HphI	GGTGA	2 cut(s)	43, 910
Hpy188III	TCNNGA	5 cut(s)	702, 812, 836, 931, 953
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	3 cut(s)	236, 265, 585
HpyCH4III	ACNGT	3 cut(s)	532, 1037, 1126
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	8 cut(s)	157, 353, 363, 472, 769, 885, 926, 1122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 265
HpyF3I	CTNAG	3 cut(s)	300, 587, 1088
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	2 cut(s)	956, 1199
Kzo9I	GATC	2 cut(s)	41, 564
LmnI	GCTCC	4 cut(s)	36, 42, 89, 198
Lsp1109I	GCAGC	1 cut(s)	668
LweI	GCATC	3 cut(s)	415, 872, 913
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	4 cut(s)	221, 569, 642, 1115
MalI	GATC	2 cut(s)	43, 566
MboI	GATC	2 cut(s)	41, 564
MfeI	CAATTG	1 cut(s)	1070
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	3 cut(s)	195, 794, 973
MlyI	GAGTC	3 cut(s)	601, 650, 676
MmeI	TCCRAC	1 cut(s)	760
MroXI	GAANNNNTTC	1 cut(s)	99
MseI	TTAA	5 cut(s)	512, 666, 800, 990, 1019
MspI	CCGG	3 cut(s)	148, 196, 975
MspR9I	CCNGG	2 cut(s)	575, 975
MunI	CAATTG	1 cut(s)	1070
Mva1269I	GAATGC	1 cut(s)	1154
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	176, 265
NciI	CCSGG	1 cut(s)	975
NdeII	GATC	2 cut(s)	41, 564
NlaIII	CATG	2 cut(s)	956, 1199
NlaIV	GGNNCC	1 cut(s)	972
NmuCI	GTSAC	2 cut(s)	569, 642
PaeR7I	CTCGAG	1 cut(s)	650
PagI	TCATGA	1 cut(s)	952
PctI	GAATGC	1 cut(s)	1154
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	6 cut(s)	280, 329, 422, 808, 832, 1142
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	3 cut(s)	601, 649, 676
PpsI	GAGTC	3 cut(s)	601, 649, 676
PshBI	ATTAAT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	972
PspXI	VCTCGAGB	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	5 cut(s)	512, 666, 800, 990, 1019
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	2 cut(s)	41, 564
SchI	GAGTC	3 cut(s)	601, 650, 676
ScrFI	CCNGG	2 cut(s)	575, 975
SduI	GDGCHC	3 cut(s)	195, 794, 973
SfaNI	GCATC	3 cut(s)	415, 872, 913
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmlI	CTYRAG	2 cut(s)	650, 1161
SmoI	CTYRAG	2 cut(s)	650, 1161
SsiI	CCGC	1 cut(s)	87
SspI	AATATT	2 cut(s)	798, 864
SspMI	CTAG	1 cut(s)	638
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	573, 973
TaaI	ACNGT	3 cut(s)	532, 1037, 1126
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	3 cut(s)	425, 651, 1183
TfiI	GAWTC	6 cut(s)	280, 329, 422, 808, 832, 1142
Tru1I	TTAA	5 cut(s)	512, 666, 800, 990, 1019
Tru9I	TTAA	5 cut(s)	512, 666, 800, 990, 1019
TscAI	CASTG	1 cut(s)	1040
TseFI	GTSAC	2 cut(s)	569, 642
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	2 cut(s)	569, 642
TspDTI	ATGAA	7 cut(s)	92, 150, 272, 359, 845, 969, 1184
TspGWI	ACGGA	1 cut(s)	436
TspRI	CASTG	1 cut(s)	1040
VspI	ATTAAT	1 cut(s)	666
XapI	RAATTY	2 cut(s)	161, 307
XhoI	CTCGAG	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	99
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.