Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Forward (+)

64674343 .. 64678507

Gene Structure 4165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00385640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATCTCATACACTCAGAATCACAGAGGCATGGACCATTTCGGAGAGAAAATGGAGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACGGCGGGAAGTTGCAGGAATTTCAAGCCGAATTAGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGAGAGGTTAGTTACCTTCAGAATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCAATGCTTATGAGGAATCCACCTGCGAGATGAAACGTGCAATTCAATACAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATTGAAAAGGAGGCAATTTCTGTAAAGAAAGTTGTGGATCATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGTGGCTGGATTAAAGAGCAAAATGGATACTGTTTCCACATTTGAGAAAGTATTTATTGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTTGGAGAAAGGATAAATTCATTTCGGAACTAGAGTCACAGCTCGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGCTTCAGAAAATTATATCAGCAAAGGATGTGGTCATACAGAACTTGATTTCAGAAAAACAGGGATTGCATTTTGAAGTTGGAAGTTTGGGCACAATATTAAGGAAGATTCAAGACACTATTAGAAGTATGAATCAAGAGGACAAATGCGTATTCTCCTCAATATTGGAACATCAACAAGGATGCAATATGATTTTGGTGAAAGAAGATAATAGGATTGAAGATGCAATCCAGAAAAATGTAGACAAAGCTCATGAAAAGGATTACAGGGCAGCCGCAGGAGGAAACACAGCTTCATCTCTATCTCAAAAGTGCAAGTCAGTTAGCAACAACTTAGAAGAGAACAATAACTTGGACTCCTGTGTGTCAGAGACAGCTTCGTCAAACCCTCAATTGCGAGCTACTGTCCCAAGTGTTCTATCAAATGATATAAAGGGTAACTGCACAGTATCAACGCATATAGAATCAGAATGCTCATCTACTCCAGCTGAAATCTCACACAATCAAAATGAGGTTCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

48.3

Weight (kDa)

5.9

Isoelectric Point (pI)

48.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
AasI	GACNNNNNNGTC	1 cut(s)	1123
Acc36I	ACCTGC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	987
AciI	CCGC	3 cut(s)	138, 198, 1020
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	212, 674
AcuI	CTGAAG	4 cut(s)	263, 329, 341, 734
AdeI	CACNNNGTG	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	127, 265
AgsI	TTSAA	7 cut(s)	79, 218, 410, 482, 821, 857, 965
AjnI	CCWGG	1 cut(s)	624
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	3 cut(s)	411, 650, 1109
AlwI	GGATC	1 cut(s)	522
Ama87I	CYCGRG	1 cut(s)	701
ApeKI	GCWGC	2 cut(s)	707, 1016
ApoI	RAATTY	2 cut(s)	212, 674
AseI	ATTAAT	1 cut(s)	717
Asp700I	GAANNNNTTC	2 cut(s)	150, 747
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	94, 955
AvaI	CYCGRG	1 cut(s)	701
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	839
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	719, 1028
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	626
BciVI	GTATCC	1 cut(s)	571
BcoDI	GTCTC	3 cut(s)	411, 650, 1109
BfaI	CTAG	1 cut(s)	689
BfuAI	ACCTGC	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	571
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	3 cut(s)	708, 1017, 1020
BlsI	GCNGC	3 cut(s)	709, 1018, 1021
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	3 cut(s)	466, 917, 958
BpmI	CTGGAG	3 cut(s)	68, 320, 1212
BsaXI	ACNNNNNCTCC	2 cut(s)	1085, 1115
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 265
BseBI	CCWGG	1 cut(s)	626
BseGI	GGATG	2 cut(s)	778, 932
BseLI	CCNNNNNNNGG	2 cut(s)	127, 265
BseMII	CTCAG	2 cut(s)	29, 629
BseRI	GAGGAG	1 cut(s)	892
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	2 cut(s)	719, 1028
BsgI	GTGCAG	1 cut(s)	1171
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	701
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	1136
BslI	CCNNNNNNNGG	2 cut(s)	127, 265
BsmAI	GTCTC	3 cut(s)	411, 650, 1109
BsmFI	GGGAC	1 cut(s)	1136
BsmI	GAATGC	1 cut(s)	1220
BsoBI	CYCGRG	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	246, 839
Bsp143I	GATC	4 cut(s)	3, 92, 514, 615
BspACI	CCGC	3 cut(s)	138, 198, 1020
BspCNI	CTCAG	2 cut(s)	28, 630
BspHI	TCATGA	2 cut(s)	997, 1261
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	522
BspQI	GCTCTTC	1 cut(s)	738
BssMI	GATC	4 cut(s)	3, 92, 514, 615
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	3 cut(s)	583, 1150, 1192
Bst6I	CTCTTC	2 cut(s)	738, 1077
BstC8I	GCNNGC	1 cut(s)	1143
BstDEI	CTNAG	4 cut(s)	15, 351, 638, 1078
BstF5I	GGATG	2 cut(s)	778, 932
BstKTI	GATC	4 cut(s)	6, 95, 517, 618
BstMAI	GTCTC	3 cut(s)	411, 650, 1109
BstMBI	GATC	4 cut(s)	3, 92, 514, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 316
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	624
BstSLI	GKGCMC	1 cut(s)	839
BstV1I	GCAGC	2 cut(s)	719, 1028
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuI	GTATCC	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	778, 932
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	1143
CciI	TCATGA	2 cut(s)	997, 1261
Cfr13I	GGNCC	1 cut(s)	34
CspCI	CAANNNNNGTGG	2 cut(s)	756, 791
CviAII	CATG	4 cut(s)	31, 518, 998, 1262
DdeI	CTNAG	4 cut(s)	15, 351, 638, 1078
DpnI	GATC	4 cut(s)	5, 94, 516, 617
DpnII	GATC	4 cut(s)	3, 92, 514, 615
DraIII	CACNNNGTG	1 cut(s)	532
DrdI	GACNNNNNNGTC	1 cut(s)	1123
DseDI	GACNNNNNNGTC	1 cut(s)	1123
Eam1104I	CTCTTC	2 cut(s)	738, 1077
EarI	CTCTTC	2 cut(s)	738, 1077
EciI	GGCGGA	1 cut(s)	127
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	4 cut(s)	263, 329, 341, 734
Eco88I	CYCGRG	1 cut(s)	701
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	4 cut(s)	34, 521, 1001, 1265
FaqI	GGGAC	1 cut(s)	1136
FatI	CATG	4 cut(s)	30, 517, 997, 1261
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	987
Fnu4HI	GCNGC	3 cut(s)	708, 1017, 1020
FokI	GGATG	2 cut(s)	785, 939
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	708, 1017, 1020
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	3 cut(s)	708, 1017, 1020
GsuI	CTGGAG	3 cut(s)	68, 320, 1212
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	4 cut(s)	34, 521, 1001, 1265
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	2 cut(s)	94, 955
Hpy166II	GTNNAC	1 cut(s)	988
Hpy188III	TCNNGA	5 cut(s)	857, 881, 976, 998, 1262
Hpy8I	GTNNAC	1 cut(s)	988
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	287, 316, 636
HpyCH4III	ACNGT	3 cut(s)	583, 1150, 1192
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	8 cut(s)	208, 404, 523, 814, 930, 971, 1059, 1188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 316
HpyF3I	CTNAG	4 cut(s)	15, 351, 638, 1078
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	4 cut(s)	34, 521, 1001, 1265
Kzo9I	GATC	4 cut(s)	3, 92, 514, 615
LguI	GCTCTTC	1 cut(s)	738
LmnI	GCTCC	4 cut(s)	87, 93, 140, 249
Lsp1109I	GCAGC	2 cut(s)	719, 1028
LweI	GCATC	3 cut(s)	466, 917, 958
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	4 cut(s)	272, 620, 693, 1181
MalI	GATC	4 cut(s)	5, 94, 516, 617
MboI	GATC	4 cut(s)	3, 92, 514, 615
MboII	GAAGA	9 cut(s)	149, 200, 457, 625, 755, 862, 962, 977, 1094
MfeI	CAATTG	1 cut(s)	1136
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	2 cut(s)	246, 839
MlyI	GAGTC	3 cut(s)	701, 727, 1094
MmeI	TCCRAC	1 cut(s)	805
MroXI	GAANNNNTTC	2 cut(s)	150, 747
MseI	TTAA	3 cut(s)	563, 717, 845
MspA1I	CMGCKG	1 cut(s)	1232
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	626
MunI	CAATTG	1 cut(s)	1136
Mva1269I	GAATGC	1 cut(s)	1220
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	227, 316
NdeII	GATC	4 cut(s)	3, 92, 514, 615
NlaIII	CATG	4 cut(s)	34, 521, 1001, 1265
NmuCI	GTSAC	2 cut(s)	620, 693
PaeR7I	CTCGAG	1 cut(s)	701
PagI	TCATGA	2 cut(s)	997, 1261
PaqCI	CACCTGC	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	738
PctI	GAATGC	1 cut(s)	1220
PdmI	GAANNNNTTC	2 cut(s)	150, 747
PfeI	GAWTC	7 cut(s)	19, 331, 380, 473, 853, 877, 1208
PkrI	GCNGC	3 cut(s)	709, 1018, 1021
PleI	GAGTC	3 cut(s)	700, 727, 1094
PpsI	GAGTC	3 cut(s)	700, 727, 1094
PshBI	ATTAAT	1 cut(s)	717
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspPI	GGNCC	1 cut(s)	34
PspXI	VCTCGAGB	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	1232
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	738
SaqAI	TTAA	3 cut(s)	563, 717, 845
SatI	GCNGC	3 cut(s)	708, 1017, 1020
Sau3AI	GATC	4 cut(s)	3, 92, 514, 615
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	3 cut(s)	701, 727, 1094
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	246, 839
SfaNI	GCATC	3 cut(s)	466, 917, 958
Sfr274I	CTCGAG	1 cut(s)	701
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SsiI	CCGC	3 cut(s)	138, 198, 1020
SspI	AATATT	2 cut(s)	843, 909
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	624
TaaI	ACNGT	3 cut(s)	583, 1150, 1192
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	2 cut(s)	476, 702
TauI	GCSGC	1 cut(s)	1022
TfiI	GAWTC	7 cut(s)	19, 331, 380, 473, 853, 877, 1208
Tru1I	TTAA	3 cut(s)	563, 717, 845
Tru9I	TTAA	3 cut(s)	563, 717, 845
TseFI	GTSAC	2 cut(s)	620, 693
TseI	GCWGC	2 cut(s)	707, 1016
Tsp45I	GTSAC	2 cut(s)	620, 693
TspDTI	ATGAA	9 cut(s)	143, 201, 323, 410, 667, 890, 1014, 1029, 1250
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	2 cut(s)	212, 674
XhoI	CTCGAG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	987
XmnI	GAANNNNTTC	2 cut(s)	150, 747
XspI	CTAG	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.