Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Forward (+)

27255936 .. 27262384

Gene Structure 6449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G263900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAAAATTTCAATCGGGCAGAGGCAGAGACCGAAAATTAAATTCCTCAAAACTAAAAAGTGGCATGCAGTGCGCAAACAATTACAATTTACACAGGTAGATATGGAACATTTTGGAGAGAAAATGGAGTTGCTTAAATTCTCCAAATTCAAGCTCCAGCTTCGAACGCTCATCACCGAAGTCCGAGAACTCAGAGAAAAGGAACGCTCTGCCACCGAGCAACTTCGTCTTCTTATTCAGAAACAAAAGCAAACCGAGGAAGAATACGGGAGGAAATTACAGGAAGCGCAGGCTGAATTAGCTTCCTCCAATGAGCTGCGCCAAAAACTCGAAAGAGAGGCAAGGTACCTTCAGAATGACAATTCTATGCTCGAGAACAAGCAAAAAGAGTTGAAAGGAACGATACAAAGCCTACTCCAGTCGAGGGACACATTCGTTAATGCTTATGAGGAATCCACTTGTGAAATGAAACGCTCAATTCAGTGCAGAGATAGAAAGCTTTCTGTCCTATCTGAGAAGATTAAATATCATCTATTGCTATTTGATTCAATAGAAAAGGAGGCAATGTCTGTAAAGAAAGTTGTGGATAACGTGCAACGTATCGTGAGTGAAAAAGAGGAAGTAGTAGCTGGCTTAAAGAGCAAATTGGATACTGTTTCCACATTTGAGAAAGTATTTATAGAAAGGATCTGTGACCTCGAAAGCAAACTGAATAATTATGAAGGTGAGACTCGGAGAAAGGATAGAGTCATCTCAGAACTAGAAGCACTGATGGAGGCAGCAAAAATTTGCAATAACAGCCATACACAAATAGAAGAGCTTCAGAAAATTATATCATCAAAGGATGTTGTCATACAGAATTTGATGTCAGAAAAACAGGCATTGCATTTTGAAGTTGGGAGTTTGGGGATTATCTTAAGGAAGATTCAAGACACTGTTAGAAGTATGAATGAAGAGGATAAAGGGGTAATTTCCTCAATGCTGGAACGCCAAGGAGGATGCAATATGATTTTGACGAAAGAAGATAATAGGATTGAAGATGCAGTCAACAACAATGCAGAAAAGTCGCAAGAAAAGGCTTATGGGACAGGCGTTGGAGGAAATACAAGTTTTTCTTGTTCACCTATTTCTCAAAAGTACAAGTCAGCTGGCAACGACTTGCAAGAGAACAATAACTTTGACTCCTGTGTGTCAGAGTTTAACTGTTCTTCCCCACAGTCGGCTTCCTCAAAACCTCAATCAGGAGCTACTCTTCCAAGTGCCTCCGTAAATGATAGAAAGGATAATTGCACAACATCAATGCATATAGATTCAGAGTGCTCAACAACCCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

446

Amino Acids

50.92

Weight (kDa)

7.92

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	1 cut(s)	345
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	6 cut(s)	6, 41, 137, 146, 786, 859
AcuI	CTGAAG	2 cut(s)	335, 806
AfaI	GTAC	2 cut(s)	347, 1139
AfiI	CCNNNNNNNGG	3 cut(s)	424, 1219, 1241
AflII	CTTAAG	1 cut(s)	916
AgsI	TTSAA	7 cut(s)	12, 151, 394, 549, 893, 929, 1037
AluBI	AGCT	9 cut(s)	154, 160, 302, 316, 499, 629, 820, 1148, 1247
AluI	AGCT	9 cut(s)	154, 160, 302, 316, 499, 629, 820, 1148, 1247
Alw21I	GWGCWC	1 cut(s)	1322
Alw26I	GTCTC	2 cut(s)	22, 722
AlwI	GGATC	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	316, 779
ApoI	RAATTY	6 cut(s)	6, 41, 137, 146, 786, 859
Asp700I	GAANNNNTTC	2 cut(s)	499, 819
Asp718I	GGTACC	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	75, 289, 321
AsuHPI	GGTGA	3 cut(s)	166, 737, 1113
AsuII	TTCGAA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	345
BbsI	GAAGAC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	1322
BbvI	GCAGC	2 cut(s)	303, 791
BccI	CCATC	1 cut(s)	766
BcgI	CGANNNNNNTGC	2 cut(s)	1047, 1081
BciVI	GTATCC	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	22, 722
BfaI	CTAG	1 cut(s)	761
BfrI	CTTAAG	1 cut(s)	916
BfuI	GTATCC	1 cut(s)	643
BisI	GCNGC	2 cut(s)	317, 780
BlsI	GCNGC	2 cut(s)	318, 781
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	347
BmsI	GCATC	2 cut(s)	989, 1030
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	2 cut(s)	140, 401
Bpu14I	TTCGAA	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	2 cut(s)	255, 991
BsaXI	ACNNNNNCTCC	4 cut(s)	551, 581, 1166, 1196
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 1219, 1241
Bse1I	ACTGG	1 cut(s)	418
Bse3DI	GCAATG	2 cut(s)	570, 881
BseDI	CCNNGG	2 cut(s)	255, 991
BseGI	GGATG	2 cut(s)	850, 1004
BseLI	CCNNNNNNNGG	3 cut(s)	424, 1219, 1241
BseMI	GCAATG	2 cut(s)	570, 881
BseMII	CTCAG	3 cut(s)	205, 504, 768
BseNI	ACTGG	1 cut(s)	418
BseXI	GCAGC	2 cut(s)	303, 791
BsgI	GTGCAG	1 cut(s)	505
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	1322
BsiHKCI	CYCGRG	1 cut(s)	371
BslFI	GGGAC	2 cut(s)	440, 1099
BslI	CCNNNNNNNGG	3 cut(s)	424, 1219, 1241
BsmAI	GTCTC	2 cut(s)	22, 722
BsmFI	GGGAC	2 cut(s)	440, 1099
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	1322
Bsp143I	GATC	1 cut(s)	687
BspCNI	CTCAG	3 cut(s)	204, 505, 767
BspLI	GGNNCC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	695
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	345
BspTI	CTTAAG	1 cut(s)	916
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	2 cut(s)	570, 881
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	2 cut(s)	255, 991
BssMI	GATC	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	991
Bst4CI	ACNGT	4 cut(s)	655, 937, 1205, 1218
Bst6I	CTCTTC	3 cut(s)	810, 948, 1257
BstAFI	CTTAAG	1 cut(s)	916
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	4 cut(s)	66, 291, 631, 1150
BstDEI	CTNAG	3 cut(s)	191, 513, 754
BstENI	CCTNNNNNAGG	1 cut(s)	1239
BstF5I	GGATG	2 cut(s)	850, 1004
BstHHI	GCGC	3 cut(s)	75, 289, 321
BstKTI	GATC	1 cut(s)	690
BstMAI	GTCTC	2 cut(s)	22, 722
BstMBI	GATC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 166, 299, 639, 798
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	303, 791
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	687
BstYI	RGATCY	1 cut(s)	687
BsuI	GTATCC	1 cut(s)	643
BtsCI	GGATG	2 cut(s)	850, 1004
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	4 cut(s)	75, 488, 767, 933
Cac8I	GCNNGC	4 cut(s)	66, 291, 631, 1150
CfoI	GCGC	3 cut(s)	75, 289, 321
Csp6I	GTAC	2 cut(s)	346, 1138
CviAII	CATG	1 cut(s)	65
CviQI	GTAC	2 cut(s)	346, 1138
DdeI	CTNAG	3 cut(s)	191, 513, 754
DpnI	GATC	1 cut(s)	689
DpnII	GATC	1 cut(s)	687
Eam1104I	CTCTTC	3 cut(s)	810, 948, 1257
EarI	CTCTTC	3 cut(s)	810, 948, 1257
Eco130I	CCWWGG	1 cut(s)	991
Eco31I	GGTCTC	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	335, 806
Eco88I	CYCGRG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	1239
EcoT14I	CCWWGG	1 cut(s)	991
EcoT22I	ATGCAT	1 cut(s)	1305
ErhI	CCWWGG	1 cut(s)	991
FaeI	CATG	1 cut(s)	68
FalI	AAGNNNNNCTT	2 cut(s)	1099, 1131
FaqI	GGGAC	2 cut(s)	440, 1099
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	317, 780
FokI	GGATG	2 cut(s)	857, 1011
Fsp4HI	GCNGC	2 cut(s)	317, 780
FspBI	CTAG	1 cut(s)	761
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	3 cut(s)	74, 288, 320
GluI	GCNGC	2 cut(s)	317, 780
GsuI	CTGGAG	2 cut(s)	140, 401
HhaI	GCGC	3 cut(s)	75, 289, 321
Hin1II	CATG	1 cut(s)	68
Hin6I	GCGC	3 cut(s)	73, 287, 319
HinP1I	GCGC	3 cut(s)	73, 287, 319
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	7 cut(s)	452, 545, 730, 747, 925, 1181, 1310
HphI	GGTGA	3 cut(s)	166, 737, 1113
Hpy166II	GTNNAC	2 cut(s)	1048, 1121
Hpy188III	TCNNGA	4 cut(s)	373, 604, 929, 1242
Hpy8I	GTNNAC	2 cut(s)	1048, 1121
HpyAV	CCTTC	2 cut(s)	359, 716
HpyCH4III	ACNGT	4 cut(s)	655, 937, 1205, 1218
HpyCH4IV	ACGT	2 cut(s)	591, 598
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 166, 299, 639, 798
HpyF3I	CTNAG	3 cut(s)	191, 513, 754
HpySE526I	ACGT	2 cut(s)	591, 598
Hsp92II	CATG	1 cut(s)	68
HspAI	GCGC	3 cut(s)	73, 287, 319
KpnI	GGTACC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	687
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	159, 1244
Lsp1109I	GCAGC	2 cut(s)	303, 791
LweI	GCATC	2 cut(s)	989, 1030
MaeI	CTAG	1 cut(s)	761
MaeII	ACGT	2 cut(s)	591, 598
MaeIII	GTNAC	1 cut(s)	692
MalI	GATC	1 cut(s)	689
MboI	GATC	1 cut(s)	687
MflI	RGATCY	1 cut(s)	687
MhlI	GDGCHC	1 cut(s)	1322
MlyI	GAGTC	3 cut(s)	724, 756, 1175
MmeI	TCCRAC	1 cut(s)	1075
Mph1103I	ATGCAT	1 cut(s)	1305
MroXI	GAANNNNTTC	2 cut(s)	499, 819
MseI	TTAA	8 cut(s)	39, 135, 438, 522, 635, 917, 1200, 1336
MspA1I	CMGCKG	1 cut(s)	1148
MspCI	CTTAAG	1 cut(s)	916
MwoI	GCNNNNNNNGC	5 cut(s)	70, 166, 299, 639, 798
NdeII	GATC	1 cut(s)	687
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	347
NmuCI	GTSAC	1 cut(s)	692
NsbI	TGCGCA	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	1305
NspI	RCATGY	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	499, 819
PfeI	GAWTC	4 cut(s)	452, 545, 925, 1310
PkrI	GCNGC	2 cut(s)	318, 781
PleI	GAGTC	3 cut(s)	724, 755, 1175
PpsI	GAGTC	3 cut(s)	724, 755, 1175
PspN4I	GGNNCC	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	687
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	2 cut(s)	347, 1139
RsaNI	GTAC	2 cut(s)	346, 1138
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	8 cut(s)	39, 135, 438, 522, 635, 917, 1200, 1336
SatI	GCNGC	2 cut(s)	317, 780
Sau3AI	GATC	1 cut(s)	687
SchI	GAGTC	3 cut(s)	724, 756, 1175
SduI	GDGCHC	1 cut(s)	1322
SfaNI	GCATC	2 cut(s)	989, 1030
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	371, 916
SmoI	CTYRAG	2 cut(s)	371, 916
SphI	GCATGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	761
StyI	CCWWGG	1 cut(s)	991
TaaI	ACNGT	4 cut(s)	655, 937, 1205, 1218
TaiI	ACGT	2 cut(s)	594, 601
TaqI	TCGA	5 cut(s)	163, 330, 372, 422, 699
TaqII	GACCGA	1 cut(s)	46
TatI	WGTACW	1 cut(s)	1137
TfiI	GAWTC	4 cut(s)	452, 545, 925, 1310
Tru1I	TTAA	8 cut(s)	39, 135, 438, 522, 635, 917, 1200, 1336
Tru9I	TTAA	8 cut(s)	39, 135, 438, 522, 635, 917, 1200, 1336
TscAI	CASTG	4 cut(s)	75, 488, 774, 940
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	2 cut(s)	316, 779
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	17, 482, 735, 962, 966
TspGWI	ACGGA	1 cut(s)	1255
TspRI	CASTG	4 cut(s)	75, 488, 774, 940
Vha464I	CTTAAG	1 cut(s)	916
XagI	CCTNNNNNAGG	1 cut(s)	1239
XapI	RAATTY	6 cut(s)	6, 41, 137, 146, 786, 859
XceI	RCATGY	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	371
XmnI	GAANNNNTTC	2 cut(s)	499, 819
XspI	CTAG	1 cut(s)	761
Zsp2I	ATGCAT	1 cut(s)	1305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.