Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Forward (+)

32783247 .. 32792099

Gene Structure 8853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGAGCTGCTCAAACTCTCCAAATTCAAGCTTCAGCTCCGGACTCTCATCACCGAAGTCCGAGATCTCCGAGAGAGGGAGCGCTCCGCCACCGAGCAACTTCATCTTCTCGTTCAGAAACAGAAGCAAACCGACGAAGAAAACGGCCGGAGGTTGCAGGAGTTTCAGGCGGAGTTAGCTTCCTCCAACGAGCTCCGGCAGAAACTCCAGAGGGAGGTTAGTTATCTTCAGAATGACAATTCCTTGCTAGAGAACAAGCAAAAGGAGTTGAAGGCGACGATTCACAGCTTGCTTCAAACTAAGGAGACTTTTGTCAATGCTTATGAGGAATCCACCTGTGAAATGAAACGCGCAATTCAATGCAGAGATAGACAAATTGCTGTCCTATCAGAGAAGATAAAATCACATCTATTGCTGTTTGATTCGATAGAGAAGGAGGCGGTTTCTGTAAAGAAAGTTGTGGATGATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGGCAAGCATCTTTTTGAACTCTTACTTGGCTGGCTTAAAGAGCAAAATGGACACTGTTTCCACATTCGAGAAAAGAAGATATGTGAACAGGAAAAAGAGCTCAGAAGTTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCAGAACTAGAATCACAGCTCGAGGCAGCAAAAATTAATAATAGCAACAAGATACAAATGGAAGAGATATCCAGTCCAAAAATTATATCAGCCAAGGATGTGGTCATACAGAGTTTGGTTTCAGAAAAACAGGGCTTGCATTTTGAAGTCGAAAGTTTGGGAACGGTTTTGAGGAAGATTCAAGATACTATTAGAAGTATGAATCAAGAGGACAAAAGGGTATTCTCTTCAATATTGGAACACCAAGAAGGATGCAATATGAATTTGGCGAAGGAAAATAATAGGATTGAAGATGTCATCCAGATAAATATAGACAAAGCTCAAGAAGAGGATTACAGGGCTGCCGCAGGAGGAAATACAGCTTCACCTCTACCTCAGAAGTGCAAGTCAGTTAGCAACAACTTAGAAGAGAATAATAACTTGGGCTCCTGTGTGTCAGAGACAGCTTCGTCAAACCCTCAATTGCGAGCTCCTTCCCTAAGTGTATTATCAAATGATATAAAGGGTAACTGCACAGCGTCAACGCATATAGATTCAGAATGCTCATCTACTCAAGCCGAAATCTCACATGATCAAAATGAGGTTCATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

413

Amino Acids

47.13

Weight (kDa)

5.77

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1093
AccII	CGCG	1 cut(s)	351
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	4 cut(s)	87, 170, 440, 990
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	23, 907
AcuI	CTGAAG	2 cut(s)	17, 212
AdeI	CACNNNGTG	1 cut(s)	481
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	2 cut(s)	76, 214
AgsI	TTSAA	9 cut(s)	28, 271, 296, 359, 518, 791, 827, 876, 935
AjuI	GAANNNNNNNTTGG	4 cut(s)	510, 542, 1049, 1081
Alw21I	GWGCWC	3 cut(s)	195, 603, 1117
Alw26I	GTCTC	3 cut(s)	299, 614, 1079
Ama87I	CYCGRG	1 cut(s)	665
Aor13HI	TCCGGA	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	3 cut(s)	7, 671, 986
ApoI	RAATTY	2 cut(s)	23, 907
AseI	ATTAAT	1 cut(s)	681
AspLEI	GCGC	2 cut(s)	84, 353
AsuHPI	GGTGA	2 cut(s)	43, 1002
AvaI	CYCGRG	1 cut(s)	665
BanII	GRGCYC	4 cut(s)	195, 603, 1073, 1117
Bbv12I	GWGCWC	3 cut(s)	195, 603, 1117
BbvI	GCAGC	2 cut(s)	683, 973
BceAI	ACGGC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	1216
BcoDI	GTCTC	3 cut(s)	299, 614, 1079
BfaI	CTAG	2 cut(s)	248, 653
BfoI	RGCGCY	1 cut(s)	85
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	4 cut(s)	8, 672, 987, 990
BlsI	GCNGC	4 cut(s)	9, 673, 988, 991
BmeT110I	CYCGRG	1 cut(s)	665
BmiI	GGNNCC	1 cut(s)	1072
BmsI	GCATC	2 cut(s)	517, 887
BoxI	GACNNNNGTC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	191
BpuEI	CTTGAG	2 cut(s)	951, 1182
BsaJI	CCNNGG	1 cut(s)	738
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	1055, 1085
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 214
Bse1I	ACTGG	1 cut(s)	717
BseAI	TCCGGA	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	4 cut(s)	469, 748, 902, 942
BseLI	CCNNNNNNNGG	2 cut(s)	76, 214
BseMII	CTCAG	2 cut(s)	616, 1034
BseNI	ACTGG	1 cut(s)	717
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	683, 973
BsgI	GTGCAG	1 cut(s)	1141
Bsh1236I	CGCG	1 cut(s)	351
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	195, 603, 1117
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	40, 148, 196
BslI	CCNNNNNNNGG	2 cut(s)	76, 214
BsmAI	GTCTC	3 cut(s)	299, 614, 1079
BsmI	GAATGC	1 cut(s)	1190
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	4 cut(s)	195, 603, 1073, 1117
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	64, 1216
BspACI	CCGC	4 cut(s)	87, 170, 440, 990
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	615, 1033
BspEI	TCCGGA	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	1072
BsrI	ACTGG	1 cut(s)	717
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	2 cut(s)	64, 1216
BssT1I	CCWWGG	1 cut(s)	738
Bst4CI	ACNGT	2 cut(s)	557, 811
Bst6I	CTCTTC	4 cut(s)	702, 877, 966, 1047
BstC8I	GCNNGC	5 cut(s)	290, 506, 533, 782, 1113
BstDEI	CTNAG	5 cut(s)	300, 602, 1020, 1048, 1124
BstF5I	GGATG	4 cut(s)	469, 748, 902, 942
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	84, 353
BstKTI	GATC	2 cut(s)	67, 1219
BstMAI	GTCTC	3 cut(s)	299, 614, 1079
BstMBI	GATC	2 cut(s)	64, 1216
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 541
BstPAI	GACNNNNGTC	1 cut(s)	311
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	683, 973
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	64
BstZI	CGGCCG	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	4 cut(s)	469, 748, 902, 942
BtsIMutI	CAGTG	1 cut(s)	553
Cac8I	GCNNGC	5 cut(s)	290, 506, 533, 782, 1113
CfoI	GCGC	2 cut(s)	84, 353
CseI	GACGC	1 cut(s)	1152
CviAII	CATG	2 cut(s)	1214, 1232
DdeI	CTNAG	5 cut(s)	300, 602, 1020, 1048, 1124
DpnI	GATC	2 cut(s)	66, 1218
DpnII	GATC	2 cut(s)	64, 1216
DraIII	CACNNNGTG	1 cut(s)	481
DrdI	GACNNNNNNGTC	1 cut(s)	1093
DseDI	GACNNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	4 cut(s)	702, 877, 966, 1047
EarI	CTCTTC	4 cut(s)	702, 877, 966, 1047
EciI	GGCGGA	2 cut(s)	76, 185
Ecl136II	GAGCTC	3 cut(s)	193, 601, 1115
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	4 cut(s)	195, 603, 1073, 1117
Eco32I	GATATC	1 cut(s)	714
Eco47III	AGCGCT	1 cut(s)	83
Eco52I	CGGCCG	1 cut(s)	145
Eco53kI	GAGCTC	3 cut(s)	193, 601, 1115
Eco57I	CTGAAG	2 cut(s)	17, 212
Eco88I	CYCGRG	1 cut(s)	665
EcoICRI	GAGCTC	3 cut(s)	193, 601, 1115
EcoRV	GATATC	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	4 cut(s)	195, 603, 1073, 1117
ErhI	CCWWGG	1 cut(s)	738
FaeI	CATG	2 cut(s)	1217, 1235
FatI	CATG	2 cut(s)	1213, 1231
FbaI	TGATCA	1 cut(s)	1216
Fnu4HI	GCNGC	4 cut(s)	8, 672, 987, 990
FokI	GGATG	4 cut(s)	476, 755, 909, 929
FriOI	GRGCYC	4 cut(s)	195, 603, 1073, 1117
Fsp4HI	GCNGC	4 cut(s)	8, 672, 987, 990
FspBI	CTAG	2 cut(s)	248, 653
GlaI	GCGC	2 cut(s)	83, 352
GluI	GCNGC	4 cut(s)	8, 672, 987, 990
GsuI	CTGGAG	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	3 cut(s)	40, 148, 196
HgaI	GACGC	1 cut(s)	1152
HhaI	GCGC	2 cut(s)	84, 353
Hin1II	CATG	2 cut(s)	1217, 1235
Hin6I	GCGC	2 cut(s)	82, 351
HinP1I	GCGC	2 cut(s)	82, 351
HincII	GTYRAC	1 cut(s)	1167
HindII	GTYRAC	1 cut(s)	1167
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	9 cut(s)	43, 280, 329, 422, 622, 656, 823, 847, 1178
HpaII	CCGG	3 cut(s)	40, 148, 196
HphI	GGTGA	2 cut(s)	43, 1002
Hpy166II	GTNNAC	2 cut(s)	587, 1167
Hpy188III	TCNNGA	7 cut(s)	40, 208, 569, 827, 851, 946, 968
Hpy8I	GTNNAC	2 cut(s)	587, 1167
Hpy99I	CGWCG	2 cut(s)	137, 280
HpyAV	CCTTC	5 cut(s)	265, 427, 887, 910, 1128
HpyCH4III	ACNGT	2 cut(s)	557, 811
HpyCH4V	TGCA	7 cut(s)	157, 363, 472, 784, 900, 1029, 1158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 541
HpyF3I	CTNAG	5 cut(s)	300, 602, 1020, 1048, 1124
Hsp92II	CATG	2 cut(s)	1217, 1235
HspAI	GCGC	2 cut(s)	82, 351
Kpn2I	TCCGGA	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	1216
Kzo9I	GATC	2 cut(s)	64, 1216
LmnI	GCTCC	7 cut(s)	4, 42, 79, 89, 198, 1076, 1120
Lsp1109I	GCAGC	2 cut(s)	683, 973
LweI	GCATC	2 cut(s)	517, 887
MaeI	CTAG	2 cut(s)	248, 653
MaeIII	GTNAC	1 cut(s)	1151
MalI	GATC	2 cut(s)	66, 1218
MboI	GATC	2 cut(s)	64, 1216
MfeI	CAATTG	1 cut(s)	1106
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	4 cut(s)	195, 603, 1073, 1117
MluCI	AATT	8 cut(s)	23, 238, 354, 375, 678, 726, 907, 1106
MlyI	GAGTC	2 cut(s)	37, 616
MmeI	TCCRAC	1 cut(s)	210
MroI	TCCGGA	1 cut(s)	39
MseI	TTAA	2 cut(s)	537, 681
MspI	CCGG	3 cut(s)	40, 148, 196
MunI	CAATTG	1 cut(s)	1106
Mva1269I	GAATGC	1 cut(s)	1190
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	176, 541
NdeII	GATC	2 cut(s)	64, 1216
NlaIII	CATG	2 cut(s)	1217, 1235
NlaIV	GGNNCC	1 cut(s)	1072
PaeR7I	CTCGAG	1 cut(s)	665
PctI	GAATGC	1 cut(s)	1190
PfeI	GAWTC	7 cut(s)	280, 329, 422, 656, 823, 847, 1178
PkrI	GCNGC	4 cut(s)	9, 673, 988, 991
PleI	GAGTC	2 cut(s)	37, 616
PpsI	GAGTC	2 cut(s)	37, 616
PshAI	GACNNNNGTC	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	681
Psp124BI	GAGCTC	3 cut(s)	195, 603, 1117
PspN4I	GGNNCC	1 cut(s)	1072
PspXI	VCTCGAGB	1 cut(s)	665
PsuI	RGATCY	1 cut(s)	64
SacI	GAGCTC	3 cut(s)	195, 603, 1117
SaqAI	TTAA	2 cut(s)	537, 681
SatI	GCNGC	4 cut(s)	8, 672, 987, 990
Sau3AI	GATC	2 cut(s)	64, 1216
SchI	GAGTC	2 cut(s)	37, 616
SduI	GDGCHC	4 cut(s)	195, 603, 1073, 1117
SfaNI	GCATC	2 cut(s)	517, 887
Sfr274I	CTCGAG	1 cut(s)	665
SlaI	CTCGAG	1 cut(s)	665
SmlI	CTYRAG	3 cut(s)	665, 966, 1197
SmoI	CTYRAG	3 cut(s)	665, 966, 1197
Sse9I	AATT	8 cut(s)	23, 238, 354, 375, 678, 726, 907, 1106
SsiI	CCGC	4 cut(s)	87, 170, 440, 990
SspI	AATATT	1 cut(s)	879
SspMI	CTAG	2 cut(s)	248, 653
SstI	GAGCTC	3 cut(s)	195, 603, 1117
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	2 cut(s)	557, 811
TaqI	TCGA	4 cut(s)	425, 568, 666, 795
TasI	AATT	8 cut(s)	23, 238, 354, 375, 678, 726, 907, 1106
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	7 cut(s)	280, 329, 422, 656, 823, 847, 1178
Tru1I	TTAA	2 cut(s)	537, 681
Tru9I	TTAA	2 cut(s)	537, 681
TscAI	CASTG	1 cut(s)	560
TseI	GCWGC	3 cut(s)	7, 671, 986
TspDTI	ATGAA	5 cut(s)	92, 359, 860, 920, 1220
TspRI	CASTG	1 cut(s)	560
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	2 cut(s)	23, 907
XhoI	CTCGAG	1 cut(s)	665
XspI	CTAG	2 cut(s)	248, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.