Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005117

Physical Location & Seq

Genomic Coordinates Forward (+)

68159911 .. 68161749

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG446200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACCATTTCGGAGAGAGAATGGGGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACTGCCGGAAGTTGCAGGAATTTCAAGCCGAATTTGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGGGAGGTTAGTTACCTTCAGGATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCAATGCTTATGAGGAATCCACCTGTGAGATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCGATAGAAAAGGAGGCAATTTCTGTAAAGAAAGTTGTGGATCATGTGCAACACCTTGTGAGTGAGAAAGAGGAACCTGAACTATTTTATGCAGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCGGAACTAGACTCGCAGCTTGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGATATCCAGACCAGTGTTTAATACTCATTTGTTTGGCTGGTTCTCAAATATGGCTTACTCTTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

29.31

Weight (kDa)

6.43

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10417 AT1G10417 AT1G10417 AT1G10417
fragaria_vesca	FvH4_4g35470
malus_domestica	MD13G1083000.v1.1
prunus_persica	Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1 Prupe.1G263900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0445111 RchiOBHm_Chr4g0445121 RchiOBHm_Chr6g0253611
rosa_laevigata	RLG00000005766
rosa_roxburghii	Rroxscaffold_5G00385640
rosa_rugosa	Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358800 Rorug04G0358900 Rorug04G0359000 Rorug04G0359000
rosa_samantha	Rh4AG419900 Rh4BG431600 Rh4CG446200 Rh4DG427800
rosa_wichuraiana	Rw4G036000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	182, 194
AcuI	CTGAAG	3 cut(s)	233, 299, 311
AdeI	CACNNNGTG	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	97, 235
AgsI	TTSAA	3 cut(s)	49, 188, 380
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	52, 58, 214, 289, 628
AluI	AGCT	5 cut(s)	52, 58, 214, 289, 628
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	381, 578
AlwI	GGATC	1 cut(s)	492
ApeKI	GCWGC	2 cut(s)	625, 635
ApoI	RAATTY	2 cut(s)	182, 194
AseI	ATTAAT	1 cut(s)	645
Asp700I	GAANNNNTTC	1 cut(s)	120
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	637, 647
BciT130I	CCWGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	381, 578
BfaI	CTAG	1 cut(s)	617
BglII	AGATCT	1 cut(s)	543
BisI	GCNGC	2 cut(s)	626, 636
BlsI	GCNGC	2 cut(s)	627, 637
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	436
BpmI	CTGGAG	2 cut(s)	38, 290
BpuEI	CTTGAG	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 235
Bse1I	ACTGG	1 cut(s)	686
BseBI	CCWGG	1 cut(s)	554
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	97, 235
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	637, 647
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	169, 217
BslI	CCNNNNNNNGG	2 cut(s)	97, 235
BsmAI	GTCTC	2 cut(s)	381, 578
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	62, 484, 543
BspACI	CCGC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	686
BssMI	GATC	3 cut(s)	62, 484, 543
Bst2UI	CCWGG	1 cut(s)	554
Bst6I	CTCTTC	1 cut(s)	666
BstDEI	CTNAG	2 cut(s)	321, 566
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	65, 487, 546
BstMAI	GTCTC	2 cut(s)	381, 578
BstMBI	GATC	3 cut(s)	62, 484, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 286
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	552
BstV1I	GCAGC	2 cut(s)	637, 647
BstX2I	RGATCY	1 cut(s)	543
BstYI	RGATCY	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	693
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	9 cut(s)	52, 58, 191, 214, 289, 309, 628, 711, 728
CviKI_1	RGCY	9 cut(s)	52, 58, 191, 214, 289, 309, 628, 711, 728
DdeI	CTNAG	2 cut(s)	321, 566
DpnI	GATC	3 cut(s)	64, 486, 545
DpnII	GATC	3 cut(s)	62, 484, 543
DraIII	CACNNNGTG	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco32I	GATATC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	3 cut(s)	233, 299, 311
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	552
EcoRV	GATATC	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	1 cut(s)	491
FaiI	YATR	6 cut(s)	306, 345, 489, 534, 576, 725
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	626, 636
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	626, 636
FspBI	CTAG	1 cut(s)	617
GluI	GCNGC	2 cut(s)	626, 636
GsuI	CTGGAG	2 cut(s)	38, 290
HapII	CCGG	2 cut(s)	169, 217
Hin1II	CATG	1 cut(s)	491
HinfI	GANTC	6 cut(s)	301, 350, 443, 586, 620, 661
HpaII	CCGG	2 cut(s)	169, 217
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	8 cut(s)	14, 62, 83, 92, 138, 412, 591, 613
Hpy188III	TCNNGA	2 cut(s)	251, 681
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	257, 286, 564
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	178, 374, 384, 493, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 286
HpyF3I	CTNAG	2 cut(s)	321, 566
HpySE526I	ACGT	1 cut(s)	370
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	3 cut(s)	62, 484, 543
LmnI	GCTCC	4 cut(s)	57, 63, 110, 219
Lsp1109I	GCAGC	2 cut(s)	637, 647
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	2 cut(s)	242, 548
MalI	GATC	3 cut(s)	64, 486, 545
MboI	GATC	3 cut(s)	62, 484, 543
MboII	GAAGA	5 cut(s)	119, 170, 427, 553, 683
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	7 cut(s)	182, 194, 259, 375, 396, 462, 642
MlyI	GAGTC	3 cut(s)	580, 614, 655
MnlI	CCTC	6 cut(s)	214, 229, 340, 451, 508, 625
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	645, 693, 738
MspI	CCGG	2 cut(s)	169, 217
MspR9I	CCNGG	1 cut(s)	554
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	2 cut(s)	197, 286
NdeII	GATC	3 cut(s)	62, 484, 543
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	301, 350, 443
PkrI	GCNGC	2 cut(s)	627, 637
PleI	GAGTC	3 cut(s)	580, 614, 655
PpsI	GAGTC	3 cut(s)	580, 614, 655
PshBI	ATTAAT	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	645, 693, 738
SatI	GCNGC	2 cut(s)	626, 636
Sau3AI	GATC	3 cut(s)	62, 484, 543
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	580, 614, 655
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	7 cut(s)	182, 194, 259, 375, 396, 462, 642
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	1 cut(s)	617
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	552
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	1 cut(s)	446
TasI	AATT	7 cut(s)	182, 194, 259, 375, 396, 462, 642
TfiI	GAWTC	3 cut(s)	301, 350, 443
Tru1I	TTAA	3 cut(s)	645, 693, 738
Tru9I	TTAA	3 cut(s)	645, 693, 738
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	2 cut(s)	625, 635
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	4 cut(s)	113, 171, 293, 380
TspRI	CASTG	1 cut(s)	693
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	645
XapI	RAATTY	2 cut(s)	182, 194
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.