Rh4AG419900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005117
Physical Location & Seq
Forward (+)
71732320 .. 71737666
5347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG419900.1

Sequence Viewer

Length: 786 bp
ATGGACCATTTCGGAGAGAGAATGGAGTTGCTGAAACTCTCCAAGTTCAAGCTCCAGCTCCGATCTCTCATCACCGAAGTCCGAGAACTCCGAGAAAGGGAACGCTCCGCCACCGAACAACTTCATCTTCTTGTTCAGAAACAGAAGCAAACCGATGAAGATTACTGCCGGAAGTTGCAGGAATTTCAAGCCGAATTAGCTTCCTCCAATGAGCTCCGGCAAAAACTCCAAAGAGAGGTTAGTTACCTTCAGGATGACAATTCCTTGCTGGAGAACAAGCAAAAAGAGCTGAAGGCGACGATTCATAGCCTACTTCAGTCTAAGGAAACTTTCGTCAATGCTTATGAGGAATCCACCTGTGAGATGAAACGTGCAATTCAATGCAGAGACAGAAAAATTGCTGTCCTATCAGAGAAGATAAGTTCGCATCTATTGTTGTTTGATTCAATAGAAAAGGAGGCAATTTCTGTAAAGAAAGTTGTGGATCATGTGCAACACCTTGTGAGTGAGAAAGAGGAAGTAGTGGCTGGATTACAGAGCAAAATGGATACTGTTTCCACATTTGAGAAAGTATTTATTGAGAAGATCTGTGACCAGGAAAAAGAACTGAGAAGGTATAGAGATGAGACTCGGAGAAAGGATAAAGTCATTTCGGAACTAGACTCGCAGCTCGAGGCAGCAAAAATTAATAATAGCAACAAGACTCAAATGGAAGAGATATCCAGACCAGTGTTTAATACTCATTTGTTTGGCTGGTTCTCAAATATGGCTTACTCTTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

30.81

Weight (kDa)

6.43

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 3 cut(s) 233, 299, 311
AdeI CACNNNGTG 1 cut(s) 502
AfiI CCNNNNNNNGG 2 cut(s) 97, 235
AgsI TTSAA 4 cut(s) 49, 188, 380, 447
AjnI CCWGG 1 cut(s) 594
AluBI AGCT 6 cut(s) 52, 58, 200, 214, 289, 670
AluI AGCT 6 cut(s) 52, 58, 200, 214, 289, 670
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 381, 620
AlwI GGATC 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 671
ApeKI GCWGC 2 cut(s) 667, 677
ApoI RAATTY 1 cut(s) 182
AseI ATTAAT 1 cut(s) 687
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 679, 689
BciT130I CCWGG 1 cut(s) 596
BciVI GTATCC 1 cut(s) 541
BcoDI GTCTC 2 cut(s) 381, 620
BfaI CTAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 541
BglII AGATCT 1 cut(s) 585
BisI GCNGC 2 cut(s) 668, 678
BlsI GCNGC 2 cut(s) 669, 679
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 1 cut(s) 436
BpmI CTGGAG 2 cut(s) 38, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 235
Bse1I ACTGG 1 cut(s) 728
BseBI CCWGG 1 cut(s) 596
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 97, 235
BseMII CTCAG 1 cut(s) 599
BseNI ACTGG 1 cut(s) 728
BseXI GCAGC 2 cut(s) 679, 689
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 2 cut(s) 169, 217
BslI CCNNNNNNNGG 2 cut(s) 97, 235
BsmAI GTCTC 2 cut(s) 381, 620
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 62, 484, 585
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 600
BspPI GGATC 1 cut(s) 492
BsrI ACTGG 1 cut(s) 728
BssMI GATC 3 cut(s) 62, 484, 585
Bst2UI CCWGG 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 708
BstDEI CTNAG 2 cut(s) 321, 608
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 3 cut(s) 65, 487, 588
BstMAI GTCTC 2 cut(s) 381, 620
BstMBI GATC 3 cut(s) 62, 484, 585
BstMWI GCNNNNNNNGC 2 cut(s) 197, 286
BstNI CCWGG 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 594
BstV1I GCAGC 2 cut(s) 679, 689
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
BsuI GTATCC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 735
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 488
DdeI CTNAG 2 cut(s) 321, 608
DpnI GATC 3 cut(s) 64, 486, 587
DpnII GATC 3 cut(s) 62, 484, 585
DraIII CACNNNGTG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 720
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 3 cut(s) 233, 299, 311
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 594
EcoRV GATATC 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 1 cut(s) 491
FaiI YATR 5 cut(s) 306, 345, 489, 618, 767
FatI CATG 1 cut(s) 487
Fnu4HI GCNGC 2 cut(s) 668, 678
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 2 cut(s) 668, 678
FspBI CTAG 1 cut(s) 659
GluI GCNGC 2 cut(s) 668, 678
GsuI CTGGAG 2 cut(s) 38, 290
HapII CCGG 2 cut(s) 169, 217
Hin1II CATG 1 cut(s) 491
HinfI GANTC 6 cut(s) 301, 350, 443, 628, 662, 703
HpaII CCGG 2 cut(s) 169, 217
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 8 cut(s) 14, 62, 83, 92, 138, 412, 633, 655
Hpy188III TCNNGA 2 cut(s) 251, 723
Hpy99I CGWCG 1 cut(s) 301
HpyAV CCTTC 3 cut(s) 257, 286, 606
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 4 cut(s) 178, 374, 384, 493
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 286
HpyF3I CTNAG 2 cut(s) 321, 608
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 1 cut(s) 491
Kzo9I GATC 3 cut(s) 62, 484, 585
LmnI GCTCC 4 cut(s) 57, 63, 110, 219
Lsp1109I GCAGC 2 cut(s) 679, 689
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 659
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 2 cut(s) 242, 590
MalI GATC 3 cut(s) 64, 486, 587
MboI GATC 3 cut(s) 62, 484, 585
MboII GAAGA 5 cut(s) 119, 170, 427, 595, 725
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 7 cut(s) 182, 194, 259, 375, 396, 462, 684
MlyI GAGTC 3 cut(s) 622, 656, 697
MnlI CCTC 6 cut(s) 214, 229, 340, 451, 508, 667
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 3 cut(s) 687, 735, 780
MspI CCGG 2 cut(s) 169, 217
MspR9I CCNGG 1 cut(s) 596
MvaI CCWGG 1 cut(s) 596
MwoI GCNNNNNNNGC 2 cut(s) 197, 286
NdeII GATC 3 cut(s) 62, 484, 585
NlaIII CATG 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 3 cut(s) 301, 350, 443
PkrI GCNGC 2 cut(s) 669, 679
PleI GAGTC 3 cut(s) 622, 656, 697
PpsI GAGTC 3 cut(s) 622, 656, 697
PshBI ATTAAT 1 cut(s) 687
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 594
PspGI CCWGG 1 cut(s) 594
PspPI GGNCC 1 cut(s) 4
PspXI VCTCGAGB 1 cut(s) 671
PsuI RGATCY 1 cut(s) 585
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 3 cut(s) 687, 735, 780
SatI GCNGC 2 cut(s) 668, 678
Sau3AI GATC 3 cut(s) 62, 484, 585
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 3 cut(s) 622, 656, 697
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 436
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
Sse9I AATT 7 cut(s) 182, 194, 259, 375, 396, 462, 684
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 672
TasI AATT 7 cut(s) 182, 194, 259, 375, 396, 462, 684
TfiI GAWTC 3 cut(s) 301, 350, 443
Tru1I TTAA 3 cut(s) 687, 735, 780
Tru9I TTAA 3 cut(s) 687, 735, 780
TscAI CASTG 1 cut(s) 735
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 2 cut(s) 667, 677
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 4 cut(s) 113, 171, 293, 380
TspRI CASTG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 4
VspI ATTAAT 1 cut(s) 687
XapI RAATTY 1 cut(s) 182
XhoI CTCGAG 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.