RNA polymerase II regulatory region DNA binding
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10585 AT1G10585 AT1G10586 AT1G10586 |
| fragaria_vesca | FvH4_5g05180 FvH4_5g05180 |
| malus_domestica | MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1 |
| prunus_persica | Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1 |
| pyrus_communis | pycom06g15660 pycom14g15170 |
| rosa_chinensis | RchiOBHm_Chr7g0193761 |
| rosa_laevigata | RLG00000004247 |
| rosa_multiflora | Rmu_sc0001436.1_g000021 |
| rosa_roxburghii | Rroxscaffold_3G00261860 |
| rosa_rugosa | Rorug07G0011700 Rorug07G0011800 Rorug07G0011900 |
| rosa_samantha | Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800 |
| rosa_wichuraiana | Rw7G011800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 86 |
| AccII | CGCG | 1 cut(s) | 298 |
| AciI | CCGC | 1 cut(s) | 298 |
| AclWI | GGATC | 4 cut(s) | 81, 175, 339, 476 |
| AcuI | CTGAAG | 1 cut(s) | 398 |
| AfaI | GTAC | 1 cut(s) | 507 |
| AgsI | TTSAA | 5 cut(s) | 190, 211, 380, 424, 539 |
| AjnI | CCWGG | 1 cut(s) | 453 |
| AluBI | AGCT | 2 cut(s) | 364, 392 |
| AluI | AGCT | 2 cut(s) | 364, 392 |
| Alw21I | GWGCWC | 1 cut(s) | 394 |
| AlwI | GGATC | 4 cut(s) | 81, 175, 339, 476 |
| Ama87I | CYCGRG | 1 cut(s) | 245 |
| AspLEI | GCGC | 1 cut(s) | 87 |
| AspS9I | GGNCC | 1 cut(s) | 432 |
| AsuHPI | GGTGA | 1 cut(s) | 143 |
| AvaI | CYCGRG | 1 cut(s) | 245 |
| AvaII | GGWCC | 1 cut(s) | 432 |
| BanII | GRGCYC | 1 cut(s) | 394 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 489, 521 |
| BauI | CACGAG | 1 cut(s) | 359 |
| Bbv12I | GWGCWC | 1 cut(s) | 394 |
| BccI | CCATC | 1 cut(s) | 493 |
| BciT130I | CCWGG | 1 cut(s) | 455 |
| BclI | TGATCA | 1 cut(s) | 324 |
| Bme1390I | CCNGG | 1 cut(s) | 455 |
| Bme18I | GGWCC | 1 cut(s) | 432 |
| BmeT110I | CYCGRG | 1 cut(s) | 245 |
| BmgT120I | GGNCC | 1 cut(s) | 432 |
| BmrFI | CCNGG | 1 cut(s) | 455 |
| BmsI | GCATC | 1 cut(s) | 72 |
| BpuEI | CTTGAG | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 1 cut(s) | 453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 381, 411 |
| Bse1I | ACTGG | 1 cut(s) | 143 |
| BseBI | CCWGG | 1 cut(s) | 455 |
| BseDI | CCNNGG | 1 cut(s) | 453 |
| BseGI | GGATG | 1 cut(s) | 87 |
| BseMII | CTCAG | 2 cut(s) | 76, 298 |
| BseNI | ACTGG | 1 cut(s) | 143 |
| Bsh1236I | CGCG | 1 cut(s) | 298 |
| BsiHKAI | GWGCWC | 1 cut(s) | 394 |
| BsiHKCI | CYCGRG | 1 cut(s) | 245 |
| BsoBI | CYCGRG | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 1 cut(s) | 394 |
| Bsp143I | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| BspACI | CCGC | 1 cut(s) | 298 |
| BspCNI | CTCAG | 2 cut(s) | 75, 297 |
| BspFNI | CGCG | 1 cut(s) | 298 |
| BspPI | GGATC | 4 cut(s) | 81, 175, 339, 476 |
| BsrI | ACTGG | 1 cut(s) | 143 |
| BssECI | CCNNGG | 1 cut(s) | 453 |
| BssMI | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| BssSI | CACGAG | 1 cut(s) | 359 |
| Bst2BI | CACGAG | 1 cut(s) | 359 |
| Bst2UI | CCWGG | 1 cut(s) | 455 |
| Bst6I | CTCTTC | 2 cut(s) | 104, 492 |
| BstDEI | CTNAG | 2 cut(s) | 62, 284 |
| BstF5I | GGATG | 1 cut(s) | 87 |
| BstFNI | CGCG | 1 cut(s) | 298 |
| BstHHI | GCGC | 1 cut(s) | 87 |
| BstKTI | GATC | 6 cut(s) | 76, 163, 183, 327, 334, 484 |
| BstMBI | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| BstNI | CCWGG | 1 cut(s) | 455 |
| BstSCI | CCNGG | 1 cut(s) | 453 |
| BstUI | CGCG | 1 cut(s) | 298 |
| BstX2I | RGATCY | 1 cut(s) | 331 |
| BstYI | RGATCY | 1 cut(s) | 331 |
| BtsCI | GGATG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 1 cut(s) | 150 |
| CfoI | GCGC | 1 cut(s) | 87 |
| Cfr13I | GGNCC | 1 cut(s) | 432 |
| Csp6I | GTAC | 1 cut(s) | 506 |
| CviAII | CATG | 6 cut(s) | 88, 119, 178, 328, 340, 543 |
| CviJI | RGCY | 4 cut(s) | 364, 392, 452, 458 |
| CviKI_1 | RGCY | 4 cut(s) | 364, 392, 452, 458 |
| CviQI | GTAC | 1 cut(s) | 506 |
| DdeI | CTNAG | 2 cut(s) | 62, 284 |
| DpnI | GATC | 6 cut(s) | 75, 162, 182, 326, 333, 483 |
| DpnII | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| Eam1104I | CTCTTC | 2 cut(s) | 104, 492 |
| EarI | CTCTTC | 2 cut(s) | 104, 492 |
| Ecl136II | GAGCTC | 1 cut(s) | 392 |
| Eco24I | GRGCYC | 1 cut(s) | 394 |
| Eco47I | GGWCC | 1 cut(s) | 432 |
| Eco53kI | GAGCTC | 1 cut(s) | 392 |
| Eco57I | CTGAAG | 1 cut(s) | 398 |
| Eco88I | CYCGRG | 1 cut(s) | 245 |
| EcoICRI | GAGCTC | 1 cut(s) | 392 |
| EcoRII | CCWGG | 1 cut(s) | 453 |
| EcoT38I | GRGCYC | 1 cut(s) | 394 |
| FaeI | CATG | 6 cut(s) | 91, 122, 181, 331, 343, 546 |
| FatI | CATG | 6 cut(s) | 87, 118, 177, 327, 339, 542 |
| FauI | CCCGC | 1 cut(s) | 291 |
| FbaI | TGATCA | 1 cut(s) | 324 |
| FokI | GGATG | 1 cut(s) | 94 |
| FriOI | GRGCYC | 1 cut(s) | 394 |
| FspAI | RTGCGCAY | 1 cut(s) | 86 |
| FspI | TGCGCA | 1 cut(s) | 86 |
| GlaI | GCGC | 1 cut(s) | 86 |
| HhaI | GCGC | 1 cut(s) | 87 |
| Hin1II | CATG | 6 cut(s) | 91, 122, 181, 331, 343, 546 |
| Hin6I | GCGC | 1 cut(s) | 85 |
| HinP1I | GCGC | 1 cut(s) | 85 |
| HinfI | GANTC | 3 cut(s) | 250, 302, 319 |
| HphI | GGTGA | 1 cut(s) | 143 |
| Hpy188I | TCNGA | 4 cut(s) | 65, 324, 417, 471 |
| Hpy188III | TCNNGA | 1 cut(s) | 247 |
| Hpy99I | CGWCG | 1 cut(s) | 43 |
| HpyAV | CCTTC | 5 cut(s) | 20, 64, 72, 254, 380 |
| HpyF3I | CTNAG | 2 cut(s) | 62, 284 |
| Hsp92II | CATG | 6 cut(s) | 91, 122, 181, 331, 343, 546 |
| HspAI | GCGC | 1 cut(s) | 85 |
| Ksp22I | TGATCA | 1 cut(s) | 324 |
| Kzo9I | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| LmnI | GCTCC | 1 cut(s) | 389 |
| LpnPI | CCDG | 3 cut(s) | 156, 440, 467 |
| LweI | GCATC | 1 cut(s) | 72 |
| MaeIII | GTNAC | 3 cut(s) | 138, 231, 354 |
| MalI | GATC | 6 cut(s) | 75, 162, 182, 326, 333, 483 |
| MboI | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| MboII | GAAGA | 8 cut(s) | 91, 105, 229, 263, 392, 395, 404, 509 |
| MfeI | CAATTG | 1 cut(s) | 185 |
| MflI | RGATCY | 1 cut(s) | 331 |
| MhlI | GDGCHC | 1 cut(s) | 394 |
| MluCI | AATT | 2 cut(s) | 185, 202 |
| MmeI | TCCRAC | 1 cut(s) | 449 |
| MnlI | CCTC | 2 cut(s) | 71, 159 |
| MseI | TTAA | 1 cut(s) | 44 |
| MslI | CAYNNNNRTG | 1 cut(s) | 314 |
| MspR9I | CCNGG | 1 cut(s) | 455 |
| MunI | CAATTG | 1 cut(s) | 185 |
| MvaI | CCWGG | 1 cut(s) | 455 |
| MvnI | CGCG | 1 cut(s) | 298 |
| NdeII | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| NlaIII | CATG | 6 cut(s) | 91, 122, 181, 331, 343, 546 |
| NsbI | TGCGCA | 1 cut(s) | 86 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 302 |
| PfeI | GAWTC | 3 cut(s) | 250, 302, 319 |
| Psp124BI | GAGCTC | 1 cut(s) | 394 |
| Psp6I | CCWGG | 1 cut(s) | 453 |
| PspGI | CCWGG | 1 cut(s) | 453 |
| PspPI | GGNCC | 1 cut(s) | 432 |
| PsuI | RGATCY | 1 cut(s) | 331 |
| RsaI | GTAC | 1 cut(s) | 507 |
| RsaNI | GTAC | 1 cut(s) | 506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 314 |
| SacI | GAGCTC | 1 cut(s) | 394 |
| SaqAI | TTAA | 1 cut(s) | 44 |
| Sau3AI | GATC | 6 cut(s) | 73, 160, 180, 324, 331, 481 |
| Sau96I | GGNCC | 1 cut(s) | 432 |
| ScrFI | CCNGG | 1 cut(s) | 455 |
| SduI | GDGCHC | 1 cut(s) | 394 |
| SetI | ASST | 4 cut(s) | 63, 156, 366, 394 |
| SfaNI | GCATC | 1 cut(s) | 72 |
| SinI | GGWCC | 1 cut(s) | 432 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 1 cut(s) | 393 |
| SmoI | CTYRAG | 1 cut(s) | 393 |
| Sse9I | AATT | 2 cut(s) | 185, 202 |
| SsiI | CCGC | 1 cut(s) | 298 |
| SstI | GAGCTC | 1 cut(s) | 394 |
| StyD4I | CCNGG | 1 cut(s) | 453 |
| TaqI | TCGA | 2 cut(s) | 76, 305 |
| TasI | AATT | 2 cut(s) | 185, 202 |
| TfiI | GAWTC | 3 cut(s) | 250, 302, 319 |
| Tru1I | TTAA | 1 cut(s) | 44 |
| Tru9I | TTAA | 1 cut(s) | 44 |
| TscAI | CASTG | 1 cut(s) | 150 |
| TspDTI | ATGAA | 3 cut(s) | 104, 332, 356 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| TspRI | CASTG | 1 cut(s) | 150 |
| VpaK11BI | GGWCC | 1 cut(s) | 432 |