Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007090

Physical Location & Seq

Genomic Coordinates Forward (+)

10337002 .. 10338742

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAACCCTATTGTCATGGGTATCCGGGACCATCAACTTTCTTCTCTCCGCCTCTCTTCTTCCTTATTAGGAAGGAATTAAATGAAAGGTTGATGATCGGCACGTACCCCTTTAGGTGTTTTTTGCCAACTACCAGTGTTTGCTTGAGTATACTACTGAAAAAATACTTTTCCTTTACTAATTTGTTTTTTCTTCTATATATTCAGGAAATGATGACACAGCAAAGTCAGCTCGATCTTGCAGCCTCCTACATAAAGCAATTGACAGAAAGAATAGAGAATCTGAAGGAGAGGAAGGAGAAAGAACTGAAATCAAAATTAGGGACTAGTAATAAGTCGAGCATTAATAATGTCGATCGTCCTAATAAAGCTGTGGTGGTCGGATCAAGGTTGCCTGTTATTAAACTAACCGAATCGGGATCTAGCATAGAAGTAATGCTGATCAGTGGGCTGAATAAGAACTTCATGTTTTATGAAGTTATCAGTGTACTTGAGGAAGAAGGAGCCGAAGTTGTCAGCGCTAACTTTTCCACTGTGGGTGATAAGGTCTTCCATACGATCCATGCTCAGGTTAAAATTTCTAGGGTTGGTGTAGAGACTACGACGGTATGGCAGAGACTGCAGGATTTGATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

212

Amino Acids

24.24

Weight (kDa)

9.05

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10585 AT1G10585 AT1G10586 AT1G10586
fragaria_vesca	FvH4_5g05180 FvH4_5g05180
malus_domestica	MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1
prunus_persica	Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1
pyrus_communis	pycom06g15660 pycom14g15170
rosa_chinensis	RchiOBHm_Chr7g0193761
rosa_laevigata	RLG00000004247
rosa_multiflora	Rmu_sc0001436.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261860
rosa_rugosa	Rorug07G0011700 Rorug07G0011800 Rorug07G0011900
rosa_samantha	Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800
rosa_wichuraiana	Rw7G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	3 cut(s)	391, 427, 553
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	107, 489
AfeI	AGCGCT	1 cut(s)	520
AfiI	CCNNNNNNNGG	1 cut(s)	568
AhlI	ACTAGT	1 cut(s)	326
AluBI	AGCT	2 cut(s)	232, 371
AluI	AGCT	2 cut(s)	232, 371
Alw26I	GTCTC	2 cut(s)	590, 610
AlwI	GGATC	3 cut(s)	391, 427, 553
AlwNI	CAGNNNCTG	1 cut(s)	619
Aor51HI	AGCGCT	1 cut(s)	520
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	576
AseI	ATTAAT	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	40
BciVI	GTATCC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	2 cut(s)	590, 610
BcuI	ACTAGT	1 cut(s)	326
BfaI	CTAG	3 cut(s)	327, 423, 582
BfmI	CTRYAG	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	30, 505
BmrFI	CCNGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	541
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	166, 512
BpuMI	CCSGG	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	358
BsiEI	CGRYCG	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	42, 337
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	2 cut(s)	590, 610
BsmFI	GGGAC	2 cut(s)	42, 337
Bsp143I	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	580
BspLI	GGNNCC	2 cut(s)	30, 505
BspMAI	CTGCAG	1 cut(s)	624
BspPI	GGATC	3 cut(s)	391, 427, 553
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
BssNAI	GTATAC	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	535, 607
Bst6I	CTCTTC	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	1 cut(s)	567
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	7 cut(s)	99, 238, 358, 386, 422, 444, 561
BstMAI	GTCTC	2 cut(s)	590, 610
BstMBI	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
BstMCI	CGRYCG	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 619
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	620
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	541
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BstZ17I	GTATAC	1 cut(s)	152
BsuI	GTATCC	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	142, 451, 490, 531
CaiI	CAGNNNCTG	1 cut(s)	619
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	106, 488
CviAII	CATG	3 cut(s)	17, 466, 563
CviJI	RGCY	5 cut(s)	232, 245, 371, 451, 506
CviKI_1	RGCY	5 cut(s)	232, 245, 371, 451, 506
CviQI	GTAC	2 cut(s)	106, 488
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	7 cut(s)	98, 237, 357, 385, 421, 443, 560
DpnII	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	29
Eco47III	AGCGCT	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	305
FaeI	CATG	3 cut(s)	20, 469, 566
FaqI	GGGAC	2 cut(s)	42, 337
FatI	CATG	3 cut(s)	16, 465, 562
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	3 cut(s)	327, 423, 582
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	522
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	20, 469, 566
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	2 cut(s)	280, 413
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	2 cut(s)	152, 488
Hpy188I	TCNGA	2 cut(s)	285, 383
Hpy188III	TCNNGA	2 cut(s)	206, 417
Hpy8I	GTNNAC	2 cut(s)	152, 488
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	4 cut(s)	67, 280, 289, 494
HpyCH4III	ACNGT	2 cut(s)	535, 607
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	242, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 619
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	3 cut(s)	20, 469, 566
HspAI	GCGC	1 cut(s)	519
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
LmnI	GCTCC	1 cut(s)	503
LpnPI	CCDG	6 cut(s)	39, 148, 191, 408, 554, 608
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	3 cut(s)	327, 423, 582
MaeII	ACGT	1 cut(s)	104
MalI	GATC	7 cut(s)	98, 237, 357, 385, 421, 443, 560
MboI	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
MboII	GAAGA	6 cut(s)	34, 49, 52, 185, 509, 541
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	1 cut(s)	419
MluCI	AATT	5 cut(s)	77, 181, 260, 317, 576
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	4 cut(s)	63, 256, 285, 487
MseI	TTAA	4 cut(s)	80, 345, 402, 573
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	27
MunI	CAATTG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	229, 619
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
NlaIII	CATG	3 cut(s)	20, 469, 566
NlaIV	GGNNCC	2 cut(s)	30, 505
PfeI	GAWTC	2 cut(s)	280, 413
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	244
Ple19I	CGATCG	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	30, 505
PspPI	GGNCC	1 cut(s)	29
PstI	CTGCAG	1 cut(s)	624
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	419
PvuI	CGATCG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	107, 489
RsaNI	GTAC	2 cut(s)	106, 488
SaqAI	TTAA	4 cut(s)	80, 345, 402, 573
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	7 cut(s)	96, 235, 355, 383, 419, 441, 558
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	8 cut(s)	92, 107, 119, 234, 373, 392, 549, 573
SfcI	CTRYAG	1 cut(s)	620
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	145, 491
SmoI	CTYRAG	2 cut(s)	145, 491
SpeI	ACTAGT	1 cut(s)	326
Sse9I	AATT	5 cut(s)	77, 181, 260, 317, 576
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	3 cut(s)	327, 423, 582
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	535, 607
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	234, 338, 354
TasI	AATT	5 cut(s)	77, 181, 260, 317, 576
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	2 cut(s)	280, 413
Tru1I	TTAA	4 cut(s)	80, 345, 402, 573
Tru9I	TTAA	4 cut(s)	80, 345, 402, 573
TscAI	CASTG	4 cut(s)	142, 451, 490, 538
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	4 cut(s)	17, 99, 454, 489
TspRI	CASTG	4 cut(s)	142, 451, 490, 538
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	3 cut(s)	327, 423, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.