Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007090

Physical Location & Seq

Genomic Coordinates Forward (+)

11886618 .. 11888259

Gene Structure 1642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG139800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATGACACAGCAAAGTCAGCTCGATCTTGCAGCCTCCTACATAAAGCAATTGACAGAAAGAATAGAGAATCTGAAGGAGAGGAAGGAGAAAGAACTGAAATCAAAATTAGGGACTAGTAATAAGTCGAGCATTACTAATGTCGATCGTCCTAATAAAGCTGTGGTGGTCGGATCAAGGTTGCCTGTTATTAAACTAACCGAATCGGGATCTAGCATAGAATTAATGCTGATCAGTGGGCTGCATAAGAACTTCATGTTTTATGAAGTTATCAGTGTACTTGAGGAAGAAGGAGCCGAAGTTGTGAGCGCTAACTTTTCCACTGTGGGTGATAAGGTCTTCCATACGATCCATGCTCAGGTTAAAATTTCTAGGGTTGGTGTAGAGACAACGACGGTATGGCAGAGACTGCAGGATTTGATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

7.96

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10585 AT1G10585 AT1G10586 AT1G10586
fragaria_vesca	FvH4_5g05180 FvH4_5g05180
malus_domestica	MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1
prunus_persica	Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1
pyrus_communis	pycom06g15660 pycom14g15170
rosa_chinensis	RchiOBHm_Chr7g0193761
rosa_laevigata	RLG00000004247
rosa_multiflora	Rmu_sc0001436.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261860
rosa_rugosa	Rorug07G0011700 Rorug07G0011800 Rorug07G0011900
rosa_samantha	Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800
rosa_wichuraiana	Rw7G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	181, 217, 343
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	279
AfeI	AGCGCT	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	358
AhlI	ACTAGT	1 cut(s)	116
AluBI	AGCT	2 cut(s)	22, 161
AluI	AGCT	2 cut(s)	22, 161
Alw26I	GTCTC	2 cut(s)	380, 400
AlwI	GGATC	3 cut(s)	181, 217, 343
AlwNI	CAGNNNCTG	1 cut(s)	409
Aor51HI	AGCGCT	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	32, 241
ApoI	RAATTY	1 cut(s)	366
AseI	ATTAAT	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	44, 228
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	380, 400
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	117, 213, 372
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	312
BisI	GCNGC	2 cut(s)	33, 242
BlsI	GCNGC	2 cut(s)	34, 243
BmiI	GGNNCC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	44, 228
Bsh1285I	CGRYCG	1 cut(s)	148
BsiEI	CGRYCG	1 cut(s)	148
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	380, 400
BsmFI	GGGAC	1 cut(s)	127
Bsp143I	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	414
BspPI	GGATC	3 cut(s)	181, 217, 343
BssMI	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
Bst4CI	ACNGT	2 cut(s)	325, 397
BstAPI	GCANNNNNTGC	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	6 cut(s)	28, 148, 176, 212, 234, 351
BstMAI	GTCTC	2 cut(s)	380, 400
BstMBI	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 409
BstSFI	CTRYAG	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	44, 228
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	241, 280, 321
CaiI	CAGNNNCTG	1 cut(s)	409
CfoI	GCGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	256, 353
CviJI	RGCY	5 cut(s)	22, 35, 161, 241, 296
CviKI_1	RGCY	5 cut(s)	22, 35, 161, 241, 296
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	6 cut(s)	27, 147, 175, 211, 233, 350
DpnII	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
Eco47III	AGCGCT	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	95
FaeI	CATG	2 cut(s)	259, 356
FaiI	YATR	8 cut(s)	44, 218, 246, 257, 264, 345, 354, 400
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	2 cut(s)	255, 352
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	33, 242
Fsp4HI	GCNGC	2 cut(s)	33, 242
FspBI	CTAG	3 cut(s)	117, 213, 372
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	2 cut(s)	33, 242
HaeII	RGCGCY	1 cut(s)	312
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	259, 356
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	70, 203
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	2 cut(s)	75, 173
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	3 cut(s)	70, 79, 284
HpyCH4III	ACNGT	2 cut(s)	325, 397
HpyCH4V	TGCA	3 cut(s)	32, 244, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 409
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	259, 356
HspAI	GCGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
LmnI	GCTCC	1 cut(s)	293
LpnPI	CCDG	3 cut(s)	198, 344, 398
Lsp1109I	GCAGC	2 cut(s)	44, 228
MaeI	CTAG	3 cut(s)	117, 213, 372
MalI	GATC	6 cut(s)	27, 147, 175, 211, 233, 350
MboI	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
MboII	GAAGA	2 cut(s)	299, 331
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	4 cut(s)	50, 107, 221, 366
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	46, 75, 277
MseI	TTAA	3 cut(s)	192, 224, 363
MunI	CAATTG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	19, 409
NdeII	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
NlaIII	CATG	2 cut(s)	259, 356
NlaIV	GGNNCC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	70, 203
PkrI	GCNGC	2 cut(s)	34, 243
Ple19I	CGATCG	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	409
PsuI	RGATCY	1 cut(s)	209
PvuI	CGATCG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	192, 224, 363
SatI	GCNGC	2 cut(s)	33, 242
Sau3AI	GATC	6 cut(s)	25, 145, 173, 209, 231, 348
SetI	ASST	5 cut(s)	24, 163, 182, 339, 363
SfcI	CTRYAG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SpeI	ACTAGT	1 cut(s)	116
Sse9I	AATT	4 cut(s)	50, 107, 221, 366
SspMI	CTAG	3 cut(s)	117, 213, 372
TaaI	ACNGT	2 cut(s)	325, 397
TaqI	TCGA	3 cut(s)	24, 128, 144
TasI	AATT	4 cut(s)	50, 107, 221, 366
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	70, 203
Tru1I	TTAA	3 cut(s)	192, 224, 363
Tru9I	TTAA	3 cut(s)	192, 224, 363
TscAI	CASTG	3 cut(s)	241, 280, 328
TseI	GCWGC	2 cut(s)	32, 241
TspDTI	ATGAA	2 cut(s)	244, 279
TspRI	CASTG	3 cut(s)	241, 280, 328
VspI	ATTAAT	1 cut(s)	224
XapI	RAATTY	1 cut(s)	366
XspI	CTAG	3 cut(s)	117, 213, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.