Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007090

Physical Location & Seq

Genomic Coordinates Reverse (-)

3019553 .. 3020919

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGAAGTGTACCAGTGAGACGTCGTCCAAACTGGACAGAAAGACGGTGGAGAGGAACCGGAGAATCCAAATGAAAGGTCTCTGCTTCAAGCTCGCTTCCATGGTTCCTCCCCAGTACTTCAAATCCTCCAAATCCAAGGAAATGATGACGCAGCAAAGTCAGCTCGATCTTGCAGCATCCTACATAAAGCAATTGACAGAAAGAATAGAGAATCTGAAGGAGAGGAAGGAGAAAGAACTGAAATCACAATCAGGGACTAGTAACAAGTCGAGCATTACTAATGTCGATCGTGCTAATAATAAAGCTGTGGTGGTCGGATCAAGGTTGCCTATTATTAAAATGAGTGAGTCAGGTCCTAGCATAGAAGTAATGCTGATCAGTGGGCTGAATAAGAACTTCATGTTTTATGAAGTTATCAGTGTACTTCAGGAAGAAGGAGCCGAAGTTGTCAGCGCTAACTTTTCCACTGTGGGTGATAAGATTTTCCATACGCTGCATGCTCAGGTTAAAATTTCTAGGGTTGGTGTGGAGACTACGAGGGTATGGCAGAGACTGCAGGACTTGATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

192

Amino Acids

21.67

Weight (kDa)

9.72

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10585 AT1G10585 AT1G10586 AT1G10586
fragaria_vesca	FvH4_5g05180 FvH4_5g05180
malus_domestica	MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1
prunus_persica	Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1
pyrus_communis	pycom06g15660 pycom14g15170
rosa_chinensis	RchiOBHm_Chr7g0193761
rosa_laevigata	RLG00000004247
rosa_multiflora	Rmu_sc0001436.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261860
rosa_rugosa	Rorug07G0011700 Rorug07G0011800 Rorug07G0011900
rosa_samantha	Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800
rosa_wichuraiana	Rw7G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	2 cut(s)	239, 413
AcyI	GRCGYC	1 cut(s)	23
AfaI	GTAC	3 cut(s)	13, 119, 426
AfeI	AGCGCT	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	91, 124
AhlI	ACTAGT	1 cut(s)	260
AluBI	AGCT	3 cut(s)	94, 166, 308
AluI	AGCT	3 cut(s)	94, 166, 308
Alw26I	GTCTC	4 cut(s)	14, 86, 527, 547
AlwI	GGATC	1 cut(s)	328
AlwNI	CAGNNNCTG	1 cut(s)	556
Aor51HI	AGCGCT	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	154, 176, 496
ApoI	RAATTY	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	356
BbvI	GCAGC	3 cut(s)	166, 188, 483
BclI	TGATCA	1 cut(s)	378
BcoDI	GTCTC	4 cut(s)	14, 86, 527, 547
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	3 cut(s)	261, 360, 519
BfmI	CTRYAG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	459
BisI	GCNGC	3 cut(s)	155, 177, 497
BlsI	GCNGC	3 cut(s)	156, 178, 498
BmcAI	AGTACT	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	3 cut(s)	59, 108, 442
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	102, 138
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bse1I	ACTGG	3 cut(s)	15, 39, 115
BseDI	CCNNGG	2 cut(s)	102, 138
BseGI	GGATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	3 cut(s)	15, 39, 115
BseXI	GCAGC	3 cut(s)	166, 188, 483
Bsh1285I	CGRYCG	1 cut(s)	292
BsiEI	CGRYCG	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	271
BsmAI	GTCTC	4 cut(s)	14, 86, 527, 547
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	169, 289, 320, 378
Bsp19I	CCATGG	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	517
BspLI	GGNNCC	3 cut(s)	59, 108, 442
BspMAI	CTGCAG	1 cut(s)	561
BspPI	GGATC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	3 cut(s)	15, 39, 115
BssECI	CCNNGG	2 cut(s)	102, 138
BssMI	GATC	4 cut(s)	169, 289, 320, 378
BssNI	GRCGYC	1 cut(s)	23
BssT1I	CCWWGG	2 cut(s)	102, 138
Bst4CI	ACNGT	2 cut(s)	49, 472
BstACI	GRCGYC	1 cut(s)	23
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstC8I	GCNNGC	2 cut(s)	96, 501
BstDEI	CTNAG	1 cut(s)	504
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	4 cut(s)	172, 292, 323, 381
BstMAI	GTCTC	4 cut(s)	14, 86, 527, 547
BstMBI	GATC	4 cut(s)	169, 289, 320, 378
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 556
BstNSI	RCATGY	1 cut(s)	503
BstSFI	CTRYAG	1 cut(s)	557
BstV1I	GCAGC	3 cut(s)	166, 188, 483
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	22, 388, 427, 468
Cac8I	GCNNGC	2 cut(s)	96, 501
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	12, 118, 425
CviAII	CATG	3 cut(s)	103, 403, 500
CviJI	RGCY	5 cut(s)	94, 166, 308, 388, 443
CviKI_1	RGCY	5 cut(s)	94, 166, 308, 388, 443
CviQI	GTAC	3 cut(s)	12, 118, 425
DdeI	CTNAG	1 cut(s)	504
DpnI	GATC	4 cut(s)	171, 291, 322, 380
DpnII	GATC	4 cut(s)	169, 289, 320, 378
Eco130I	CCWWGG	2 cut(s)	102, 138
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	356
Eco47III	AGCGCT	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	239, 413
EcoO109I	RGGNCCY	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	102, 138
ErhI	CCWWGG	2 cut(s)	102, 138
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	106, 406, 503
FaiI	YATR	8 cut(s)	104, 188, 365, 404, 411, 492, 501, 547
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	3 cut(s)	102, 402, 499
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	155, 177, 497
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	155, 177, 497
FspBI	CTAG	3 cut(s)	261, 360, 519
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	3 cut(s)	155, 177, 497
HaeII	RGCGCY	1 cut(s)	459
HapII	CCGG	1 cut(s)	61
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	106, 406, 503
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	3 cut(s)	66, 214, 350
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	12, 425
Hpy188I	TCNGA	2 cut(s)	219, 320
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	2 cut(s)	12, 425
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	214, 223, 431
HpyCH4III	ACNGT	2 cut(s)	49, 472
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	176, 499, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 556
HpyF3I	CTNAG	1 cut(s)	504
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	106, 406, 503
HspAI	GCGC	1 cut(s)	456
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	4 cut(s)	169, 289, 320, 378
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	9 cut(s)	20, 28, 74, 128, 240, 339, 416, 491, 545
Lsp1109I	GCAGC	3 cut(s)	166, 188, 483
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	3 cut(s)	261, 360, 519
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	171, 291, 322, 380
MboI	GATC	4 cut(s)	169, 289, 320, 378
MboII	GAAGA	2 cut(s)	16, 446
MfeI	CAATTG	1 cut(s)	194
MluCI	AATT	2 cut(s)	194, 513
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	48, 120, 139, 219, 534
MseI	TTAA	2 cut(s)	339, 510
MspI	CCGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	163, 556
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	4 cut(s)	169, 289, 320, 378
NlaIII	CATG	3 cut(s)	106, 406, 503
NlaIV	GGNNCC	3 cut(s)	59, 108, 442
NspI	RCATGY	1 cut(s)	503
PaeI	GCATGC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	66, 214
PflFI	GACNNNGTC	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	156, 178, 498
Ple19I	CGATCG	1 cut(s)	292
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	59, 108, 442
PspPI	GGNCC	1 cut(s)	356
PspPPI	RGGWCCY	1 cut(s)	356
PstI	CTGCAG	1 cut(s)	561
PstNI	CAGNNNCTG	1 cut(s)	556
PsyI	GACNNNGTC	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	292
RsaI	GTAC	3 cut(s)	13, 119, 426
RsaNI	GTAC	3 cut(s)	12, 118, 425
SaqAI	TTAA	2 cut(s)	339, 510
SatI	GCNGC	3 cut(s)	155, 177, 497
Sau3AI	GATC	4 cut(s)	169, 289, 320, 378
Sau96I	GGNCC	1 cut(s)	356
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	1 cut(s)	359
SetI	ASST	8 cut(s)	26, 82, 96, 168, 310, 329, 358, 510
SfaNI	GCATC	1 cut(s)	188
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	356
SpeI	ACTAGT	1 cut(s)	260
SphI	GCATGC	1 cut(s)	503
Sse9I	AATT	2 cut(s)	194, 513
SspMI	CTAG	3 cut(s)	261, 360, 519
StyI	CCWWGG	2 cut(s)	102, 138
TaaI	ACNGT	2 cut(s)	49, 472
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	168, 272, 288
TasI	AATT	2 cut(s)	194, 513
TatI	WGTACW	2 cut(s)	117, 424
TfiI	GAWTC	2 cut(s)	66, 214
Tru1I	TTAA	2 cut(s)	339, 510
Tru9I	TTAA	2 cut(s)	339, 510
TscAI	CASTG	4 cut(s)	22, 388, 427, 475
TseI	GCWGC	3 cut(s)	154, 176, 496
TspDTI	ATGAA	4 cut(s)	17, 89, 391, 426
TspRI	CASTG	4 cut(s)	22, 388, 427, 475
Tth111I	GACNNNGTC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	1 cut(s)	503
XspI	CTAG	3 cut(s)	261, 360, 519
ZraI	GACGTC	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.