Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

959249 .. 962436

Gene Structure 3188 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCAACAACAAAAACCTCCATTGCCAAAACCATAGCCAAGCTCTATACTTGTAATAGTAATAGTGGGTCCCTCTCTTCCATTCCCAATCATTTGGGTTCATTTCAGTCTTCTTCCTTGTTCAGCTCCTCCTCTACTTCTGCAGCTTCCTCAGTAGCCGAGTCTCAAGCAACAGTCTCGTCCCAAGCTCCAGAGAGGGAAAGGTCTAGATGGTCGAAATGGCTGCTGTTTCTTCCTGGAGCTATTACTTTTGGCCTTGGAACTTGGCAGATTGTCAGAAGGCAAGAAAAGAGAAACATGCTAGACTATAGACGGAAAAAGTTGGAGATGGAACCTTTGAAATTCAACAGTGTTTCTCCATCAAGTGAAGAATTGGATAATTTGGAGTTTAGAAGGGTGTTATGCAAGGGACATTTTGATGAGAGCAGGTCAATCTATGTGGGCCCTCGTTCAAGAAGCATATCAGGAGTTACTGAAAATGGCTACTATGTCATTACACCCCTTTTGCCAATTTCTGACAAAGCTGAGAGTTCACAGCCTCCAATATTGGTCAACAGAGGATGGGTCCCCCGCAGTTGGAAAGATAAGTCTTCAGAACTTTCACAAGATGATGAACAACCTTCTAACATAACACCAACTGTTGTCAAAGAGGAGGAAAGAGCATCTTGGTGGAGGTTCTGGTTAAAGAAGCCTAAAGTTGTTGAGGATCACCCCCCTACACGTGCTCCTGATGAAGTTGTTGGAGTAATACGAGGGAGTGAAAAGCCTAGTATATTTGTTCCACCAAATGATCCAAACTCTGGCCAGTGGTTCTATGTTGATGTTCCTGCAATTGCTCGTACTTGTGGACTTCCTGAGGATACTATTTACATTGAAGACATACATGAAGATGTCAATCCGAGTAACCCGTATCCGCTTCCAAAAGATGGCAGTACCTTGATTCGGAGTTCAGTCATGCCTCAGGACCATCTAAATTATACTTTGACATGGTATTCTCTCTCTGCAGCAGTTACGTTTATGGCTTTCATGAGACTAAGACCAAAAAAGATCCGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

352

Amino Acids

39.76

Weight (kDa)

9.09

Isoelectric Point (pI)

64.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SURF1	PF02104	78 - 335	4.5e-44	SURF1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccB7I	CCANNNNNTGG	2 cut(s)	800, 926
AciI	CCGC	3 cut(s)	571, 914, 1051
AclWI	GGATC	3 cut(s)	714, 785, 1042
AcoI	YGGCCR	1 cut(s)	802
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	722
AfaI	GTAC	2 cut(s)	841, 934
AfiI	CCNNNNNNNGG	4 cut(s)	576, 800, 926, 942
AflIII	ACRYGT	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	340, 346, 453, 875
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	6 cut(s)	43, 126, 146, 188, 242, 524
AluI	AGCT	6 cut(s)	43, 126, 146, 188, 242, 524
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	3 cut(s)	168, 181, 1024
AlwI	GGATC	3 cut(s)	714, 785, 1042
AoxI	GGCC	3 cut(s)	253, 442, 802
ApaI	GGGCCC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	143, 223, 1004
ApoI	RAATTY	1 cut(s)	341
AspS9I	GGNCC	5 cut(s)	69, 442, 443, 565, 964
AsuHPI	GGTGA	1 cut(s)	701
AvaII	GGWCC	3 cut(s)	69, 565, 964
AxyI	CCTNAGG	2 cut(s)	855, 960
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	804
BanII	GRGCYC	1 cut(s)	446
BbrPI	CACGTG	1 cut(s)	722
BbsI	GAAGAC	3 cut(s)	102, 582, 882
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	155, 210, 1016
BccI	CCATC	6 cut(s)	204, 322, 367, 555, 920, 975
BcgI	CGANNNNNNTGC	4 cut(s)	159, 193, 205, 239
BciT130I	CCWGG	1 cut(s)	237
BciVI	GTATCC	2 cut(s)	853, 921
BcoDI	GTCTC	3 cut(s)	168, 181, 1024
BfaI	CTAG	3 cut(s)	207, 302, 768
BfmI	CTRYAG	3 cut(s)	141, 307, 1002
BfuAI	ACCTGC	1 cut(s)	417
BfuI	GTATCC	2 cut(s)	853, 921
BisI	GCNGC	3 cut(s)	144, 224, 1005
BlsI	GCNGC	3 cut(s)	145, 225, 1006
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	3 cut(s)	69, 565, 964
BmgT120I	GGNCC	5 cut(s)	69, 442, 443, 565, 964
BmiI	GGNNCC	6 cut(s)	70, 71, 333, 444, 566, 567
BmrFI	CCNGG	1 cut(s)	237
BmsI	GCATC	1 cut(s)	671
BpiI	GAAGAC	3 cut(s)	102, 582, 882
BpmI	CTGGAG	2 cut(s)	174, 258
BpuEI	CTTGAG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	722
BsaBI	GATNNNNATC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	256
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	4 cut(s)	576, 800, 926, 942
Bse1I	ACTGG	1 cut(s)	805
Bse21I	CCTNAGG	2 cut(s)	855, 960
Bse3DI	GCAATG	1 cut(s)	21
Bse8I	GATNNNNATC	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	566
BseJI	GATNNNNATC	1 cut(s)	894
BseLI	CCNNNNNNNGG	4 cut(s)	576, 800, 926, 942
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	4 cut(s)	165, 516, 846, 974
BseNI	ACTGG	1 cut(s)	805
BseRI	GAGGAG	3 cut(s)	118, 121, 665
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	155, 210, 1016
BshFI	GGCC	3 cut(s)	255, 444, 804
BsiHKAI	GWGCWC	1 cut(s)	727
BslFI	GGGAC	4 cut(s)	55, 166, 423, 551
BslI	CCNNNNNNNGG	4 cut(s)	576, 800, 926, 942
BsmAI	GTCTC	3 cut(s)	168, 181, 1024
BsmFI	GGGAC	4 cut(s)	55, 166, 423, 551
BsnI	GGCC	3 cut(s)	255, 444, 804
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	2 cut(s)	446, 727
Bsp143I	GATC	3 cut(s)	706, 790, 1047
BspACI	CCGC	3 cut(s)	571, 914, 1051
BspANI	GGCC	3 cut(s)	255, 444, 804
BspCNI	CTCAG	4 cut(s)	164, 517, 847, 973
BspHI	TCATGA	1 cut(s)	1026
BspLI	GGNNCC	6 cut(s)	70, 71, 333, 444, 566, 567
BspMAI	CTGCAG	2 cut(s)	145, 1006
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	3 cut(s)	714, 785, 1042
BsrDI	GCAATG	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	805
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	706, 790, 1047
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	3 cut(s)	175, 350, 640
Bst6I	CTCTTC	1 cut(s)	82
BstBAI	YACGTR	1 cut(s)	722
BstDEI	CTNAG	5 cut(s)	151, 525, 855, 960, 1034
BstF5I	GGATG	1 cut(s)	566
BstKTI	GATC	3 cut(s)	709, 793, 1050
BstMAI	GTCTC	3 cut(s)	168, 181, 1024
BstMBI	GATC	3 cut(s)	706, 790, 1047
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	3 cut(s)	141, 307, 1002
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	155, 210, 1016
BstV2I	GAAGAC	3 cut(s)	102, 582, 882
BstX2I	RGATCY	1 cut(s)	1047
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	1047
Bsu36I	CCTNAGG	2 cut(s)	855, 960
BsuI	GTATCC	2 cut(s)	853, 921
BsuRI	GGCC	3 cut(s)	255, 444, 804
BtsCI	GGATG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	355, 812
BveI	ACCTGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	1026
Cfr13I	GGNCC	5 cut(s)	69, 442, 443, 565, 964
Csp6I	GTAC	2 cut(s)	840, 933
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	5 cut(s)	298, 884, 955, 987, 1027
CviQI	GTAC	2 cut(s)	840, 933
DdeI	CTNAG	5 cut(s)	151, 525, 855, 960, 1034
DpnI	GATC	3 cut(s)	708, 792, 1049
DpnII	GATC	3 cut(s)	706, 790, 1047
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	3 cut(s)	69, 565, 964
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	722
Eco81I	CCTNAGG	2 cut(s)	855, 960
EcoO109I	RGGNCCY	3 cut(s)	69, 443, 565
EcoRII	CCWGG	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	5 cut(s)	301, 887, 958, 990, 1030
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	4 cut(s)	55, 166, 423, 551
FatI	CATG	5 cut(s)	297, 883, 954, 986, 1026
FauI	CCCGC	1 cut(s)	578
Fnu4HI	GCNGC	3 cut(s)	144, 224, 1005
FokI	GGATG	1 cut(s)	573
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	3 cut(s)	144, 224, 1005
FspBI	CTAG	3 cut(s)	207, 302, 768
GluI	GCNGC	3 cut(s)	144, 224, 1005
GsuI	CTGGAG	2 cut(s)	174, 258
HaeIII	GGCC	3 cut(s)	255, 444, 804
Hin1II	CATG	5 cut(s)	301, 887, 958, 990, 1030
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	2 cut(s)	161, 940
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	3 cut(s)	533, 553, 848
Hpy188I	TCNGA	5 cut(s)	278, 517, 595, 900, 945
Hpy188III	TCNNGA	8 cut(s)	191, 207, 453, 465, 728, 854, 962, 1027
Hpy8I	GTNNAC	3 cut(s)	533, 553, 848
HpyAV	CCTTC	3 cut(s)	273, 387, 630
HpyCH4III	ACNGT	3 cut(s)	175, 350, 640
HpyCH4IV	ACGT	2 cut(s)	721, 1013
HpyCH4V	TGCA	4 cut(s)	143, 405, 830, 1004
HpyF3I	CTNAG	5 cut(s)	151, 525, 855, 960, 1034
HpySE526I	ACGT	2 cut(s)	721, 1013
Hsp92II	CATG	5 cut(s)	301, 887, 958, 990, 1030
KflI	GGGWCCC	2 cut(s)	69, 565
Kzo9I	GATC	3 cut(s)	706, 790, 1047
LmnI	GCTCC	4 cut(s)	131, 193, 239, 730
Lsp1109I	GCAGC	3 cut(s)	155, 210, 1016
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	3 cut(s)	207, 302, 768
MaeII	ACGT	2 cut(s)	721, 1013
MaeIII	GTNAC	3 cut(s)	469, 902, 1009
MalI	GATC	3 cut(s)	708, 792, 1049
MboI	GATC	3 cut(s)	706, 790, 1047
MboII	GAAGA	8 cut(s)	69, 102, 105, 224, 380, 582, 887, 899
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	1 cut(s)	1047
MhlI	GDGCHC	2 cut(s)	446, 727
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	6 cut(s)	341, 371, 379, 510, 831, 973
MluNI	TGGCCA	1 cut(s)	804
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	3 cut(s)	303, 557, 721
Mox20I	TGGCCA	1 cut(s)	804
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	1 cut(s)	683
MslI	CAYNNNNRTG	3 cut(s)	417, 667, 888
Msp20I	TGGCCA	1 cut(s)	804
MspR9I	CCNGG	1 cut(s)	237
MunI	CAATTG	1 cut(s)	831
MvaI	CCWGG	1 cut(s)	237
NdeII	GATC	3 cut(s)	706, 790, 1047
NlaIII	CATG	5 cut(s)	301, 887, 958, 990, 1030
NlaIV	GGNNCC	6 cut(s)	70, 71, 333, 444, 566, 567
NmeAIII	GCCGAG	1 cut(s)	184
NspI	RCATGY	1 cut(s)	301
PagI	TCATGA	1 cut(s)	1026
PfeI	GAWTC	1 cut(s)	940
PflMI	CCANNNNNTGG	2 cut(s)	800, 926
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	145, 225, 1006
PleI	GAGTC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	722
PmlI	CACGTG	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	722
PpuMI	RGGWCCY	2 cut(s)	69, 565
Psp5II	RGGWCCY	2 cut(s)	69, 565
Psp6I	CCWGG	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	6 cut(s)	70, 71, 333, 444, 566, 567
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	5 cut(s)	69, 442, 443, 565, 964
PspPPI	RGGWCCY	2 cut(s)	69, 565
PstI	CTGCAG	2 cut(s)	145, 1006
PsuI	RGATCY	1 cut(s)	1047
RsaI	GTAC	2 cut(s)	841, 934
RsaNI	GTAC	2 cut(s)	840, 933
RseI	CAYNNNNRTG	3 cut(s)	417, 667, 888
SaqAI	TTAA	1 cut(s)	683
SatI	GCNGC	3 cut(s)	144, 224, 1005
Sau3AI	GATC	3 cut(s)	706, 790, 1047
Sau96I	GGNCC	5 cut(s)	69, 442, 443, 565, 964
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	2 cut(s)	446, 727
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	3 cut(s)	141, 307, 1002
SinI	GGWCC	3 cut(s)	69, 565, 964
SmiMI	CAYNNNNRTG	3 cut(s)	417, 667, 888
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	6 cut(s)	341, 371, 379, 510, 831, 973
SsiI	CCGC	3 cut(s)	571, 914, 1051
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	3 cut(s)	207, 302, 768
StyD4I	CCNGG	1 cut(s)	235
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	175, 350, 640
TaiI	ACGT	2 cut(s)	724, 1016
TaqI	TCGA	1 cut(s)	215
TasI	AATT	6 cut(s)	341, 371, 379, 510, 831, 973
TfiI	GAWTC	1 cut(s)	940
Tru1I	TTAA	1 cut(s)	683
Tru9I	TTAA	1 cut(s)	683
TscAI	CASTG	2 cut(s)	355, 812
TseI	GCWGC	3 cut(s)	143, 223, 1004
TspDTI	ATGAA	5 cut(s)	90, 627, 747, 900, 1015
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	355, 812
Van91I	CCANNNNNTGG	2 cut(s)	800, 926
VpaK11BI	GGWCC	3 cut(s)	69, 565, 964
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	206
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	3 cut(s)	207, 302, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.