Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

27566642 .. 27568795

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1182800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAAGGAAAGCTCAGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCTTGGATGAGCAGCTGGAGAGGCATCTCAACAGGGTCTTGACTTTGGAGAAGAACAAGATCATGAGAGACCCCGAAACCAATTCCAACAGCATCCACCTCACAACCACCTCCACCTCCAATTCAACCGTCACAACCACCGCCACCTCCACTTCCTCCATGACCCTCTCCATCCCCAAACGCCACCGCCAGGAGTGGGAGATCGACCCCTCCAAGCTCCTCATCAAGTCCGTCATTGCTCGTGGCACCTTTGGCACCGTACACCGTGGCATCTACGACGGTCAAGACGTCGCCGTTAAACTGCTTGACTGGGGTGAAGAGGGTCACAGGACAGACTCCGAGATTGCTTCTCTAAGAGCAGCTTTTACTCAAGAAGTTGCCGTCTGGCATAAACTAGATCATCCTAATGTTACTAAGTTTATTGGGGCGACAATGGGTTCATCAGATCTACAAATACAGACAGAAAATGGTCAAATTGGCATGCCAACTAATATCTGTTGTGTCATCTGGACGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

190

Amino Acids

21.05

Weight (kDa)

5.96

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	92 - 172	1.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	342, 566
AccB1I	GGYRCC	2 cut(s)	296, 305
AciI	CCGC	2 cut(s)	192, 238
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	2 cut(s)	339, 563
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	241, 247
AgsI	TTSAA	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	5 cut(s)	12, 54, 67, 268, 413
AluI	AGCT	5 cut(s)	12, 54, 67, 268, 413
Alw26I	GTCTC	1 cut(s)	114
ApeKI	GCWGC	2 cut(s)	64, 410
AsuHPI	GGTGA	1 cut(s)	377
BanI	GGYRCC	2 cut(s)	296, 305
BauI	CACGAG	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	76, 422
BccI	CCATC	2 cut(s)	11, 230
BceAI	ACGGC	2 cut(s)	329, 416
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	2 cut(s)	65, 411
BlsI	GCNGC	2 cut(s)	66, 412
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	298, 307
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	3 cut(s)	85, 153, 330
BmuI	ACTGGG	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	405
BsaHI	GRCGYC	2 cut(s)	339, 563
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 247
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	4 cut(s)	64, 144, 222, 451
BseLI	CCNNNNNNNGG	2 cut(s)	241, 247
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	76, 422
BshNI	GGYRCC	2 cut(s)	296, 305
BslI	CCNNNNNNNGG	2 cut(s)	241, 247
BsmAI	GTCTC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	114
Bsp143I	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
BspACI	CCGC	2 cut(s)	192, 238
BspCNI	CTCAG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	298, 307
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	296, 305
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
BssNI	GRCGYC	2 cut(s)	339, 563
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	4 cut(s)	181, 310, 317, 332
Bst6I	CTCTTC	2 cut(s)	44, 363
BstACI	GRCGYC	2 cut(s)	339, 563
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	13, 404, 465
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	4 cut(s)	64, 144, 222, 451
BstKTI	GATC	6 cut(s)	37, 46, 114, 255, 451, 499
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 303
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	2 cut(s)	76, 422
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	64, 144, 222, 451
Cac8I	GCNNGC	1 cut(s)	533
CciI	TCATGA	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	3 cut(s)	115, 211, 532
CviJI	RGCY	5 cut(s)	12, 54, 67, 268, 413
CviKI_1	RGCY	5 cut(s)	12, 54, 67, 268, 413
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	3 cut(s)	13, 404, 465
DpnI	GATC	6 cut(s)	36, 45, 113, 254, 450, 498
DpnII	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
Eam1104I	CTCTTC	2 cut(s)	44, 363
EarI	CTCTTC	2 cut(s)	44, 363
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	118, 214, 535
FaiI	YATR	5 cut(s)	116, 212, 441, 533, 568
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	3 cut(s)	114, 210, 531
Fnu4HI	GCNGC	2 cut(s)	65, 411
FokI	GGATG	4 cut(s)	71, 131, 209, 438
Fsp4HI	GCNGC	2 cut(s)	65, 411
FspBI	CTAG	1 cut(s)	446
GluI	GCNGC	2 cut(s)	65, 411
GsuI	CTGGAG	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	339, 563
Hin1II	CATG	3 cut(s)	118, 214, 535
HinfI	GANTC	1 cut(s)	386
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	5 cut(s)	16, 39, 48, 391, 496
Hpy188III	TCNNGA	5 cut(s)	91, 115, 335, 422, 559
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	2 cut(s)	332, 344
HpyCH4III	ACNGT	4 cut(s)	181, 310, 317, 332
HpyCH4IV	ACGT	2 cut(s)	339, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 303
HpyF3I	CTNAG	3 cut(s)	13, 404, 465
HpySE526I	ACGT	2 cut(s)	339, 563
Hsp92I	GRCGYC	2 cut(s)	339, 563
Hsp92II	CATG	3 cut(s)	118, 214, 535
Kzo9I	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	8 cut(s)	53, 70, 227, 254, 346, 364, 421, 544
Lsp1109I	GCAGC	2 cut(s)	76, 422
LweI	GCATC	3 cut(s)	85, 153, 330
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	2 cut(s)	339, 563
MaeIII	GTNAC	3 cut(s)	181, 374, 460
MalI	GATC	6 cut(s)	36, 45, 113, 254, 450, 498
MboI	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
MboII	GAAGA	3 cut(s)	61, 115, 380
MflI	RGATCY	1 cut(s)	496
MluCI	AATT	3 cut(s)	133, 172, 525
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	2 cut(s)	73, 303
NdeII	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
NlaIII	CATG	3 cut(s)	118, 214, 535
NlaIV	GGNNCC	2 cut(s)	298, 307
NmuCI	GTSAC	2 cut(s)	181, 374
NspI	RCATGY	1 cut(s)	535
PaeI	GCATGC	1 cut(s)	535
PagI	TCATGA	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	66, 412
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	2 cut(s)	298, 307
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	456
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	65, 411
Sau3AI	GATC	6 cut(s)	34, 43, 111, 252, 448, 496
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	242
SfaNI	GCATC	3 cut(s)	85, 153, 330
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	3 cut(s)	133, 172, 525
SsiI	CCGC	2 cut(s)	192, 238
SspMI	CTAG	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	181, 310, 317, 332
TaiI	ACGT	2 cut(s)	342, 566
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	133, 172, 525
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	181, 374
TseI	GCWGC	2 cut(s)	64, 410
Tsp45I	GTSAC	2 cut(s)	181, 374
TspDTI	ATGAA	2 cut(s)	17, 480
TspGWI	ACGGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	535
XspI	CTAG	1 cut(s)	446
ZraI	GACGTC	2 cut(s)	340, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.