Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

103577 .. 105107

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G000900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

CCTCAAGAATGGAAAATCATTCGAGAGAAACTTGTCGTGAAACAAGTTTTTGCTCGTGGAGGCTTCGGTACTGTCCATAAAGGCATCTACGATGGCCAAGAAGTTGCAGTCAAAATGTTGGAGTGGAGAGAAGACGGCCGAACAAAAGCTGAAATAGCTTCTTTGAAGAAAGATTTTAGGCAAGAGGTTTCTATTTGGCATAAGCTTGATCATCCTAACATTACTAAGTGTATTGGAGCCACAACGGATAATGATTCAGCCTCTGTTATTACTGAGTATCTTTCTGGAGGAACCCTAAAAGCCTTCATCATACAACACCAGAAAAAAAAATTGCCTCTCAAGACAGTCAAACAACTGGCTTTTGATCTTGCTAAAGGATTGAGTTATTTGCACTCCAAGAACATTGTTCATAGAGACGTGAAAACGGAAAATGTGCTTCTTGATAAGGATGGTAGGGTGAAGATAGCAGACTTTGGAGTTGCTCGTCTTGAGGCTTCAAATTTAGTAGAGATGACAGGCTACACGGGAACGCCTGGATACATGGCCCCTGAGGTCTTGGAAAGTAAACCCTACAACAGAAAATGCGACGTTTATAGCTTCGGCATTTGCTTGTGGGAGATGTATTGCTGCGATATGCCCTACCCTAACATCACGTTCTCCGAATTGACTTCAGCTGTTGTTTATAAAAATTTGAGGCCAGAGATACCCAAGCATTGCCCAAGCTCTCTAGCCAAAGTGATGAAACAGTGCTGGGATGTAGAACCCAAGAGAAGGCCAGAAATGGAGGAGGTTGTTTCCATGCTAGAGGCAATTAACACGTCAAACAGTGAAGCCTCAATTCATAGTCATGCTCCTTGGGGTTGCTTCAGCTTCTTCGGCTCAAGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

297

Amino Acids

33.55

Weight (kDa)

8.68

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	684
AcoI	YGGCCR	2 cut(s)	94, 136
AcsI	RAATTY	2 cut(s)	499, 688
AcuI	CTGAAG	2 cut(s)	654, 850
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	771
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	2 cut(s)	166, 498
AjiI	CACGTC	2 cut(s)	418, 819
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	7 cut(s)	149, 158, 205, 597, 674, 723, 870
AluI	AGCT	7 cut(s)	149, 158, 205, 597, 674, 723, 870
Alw26I	GTCTC	1 cut(s)	408
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	5 cut(s)	94, 136, 543, 695, 773
ApeKI	GCWGC	1 cut(s)	627
ApoI	RAATTY	2 cut(s)	499, 688
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	96
BauI	CACGAG	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	2 cut(s)	86, 443
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	530
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	728, 803
BfuI	GTATCC	1 cut(s)	530
BisI	GCNGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	629
Bme1390I	CCNGG	1 cut(s)	534
BmgBI	CACGTC	2 cut(s)	418, 819
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	3 cut(s)	238, 292, 546
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	3 cut(s)	323, 509, 865
BsaJI	CCNNGG	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	1 cut(s)	771
Bse1I	ACTGG	1 cut(s)	360
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	3 cut(s)	211, 454, 760
BseLI	CCNNNNNNNGG	1 cut(s)	771
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	2 cut(s)	264, 540
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	800
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	614
BseYI	CCCAGC	1 cut(s)	750
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	5 cut(s)	96, 138, 545, 697, 775
BsiEI	CGRYCG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	771
BsmAI	GTCTC	1 cut(s)	408
BsmBI	CGTCTC	1 cut(s)	408
BsnI	GGCC	5 cut(s)	96, 138, 545, 697, 775
Bsp143I	GATC	2 cut(s)	208, 364
BspANI	GGCC	5 cut(s)	96, 138, 545, 697, 775
BspCNI	CTCAG	2 cut(s)	265, 541
BspLI	GGNNCC	3 cut(s)	238, 292, 546
BsrDI	GCAATG	1 cut(s)	712
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	2 cut(s)	208, 364
BssSI	CACGAG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	854
Bst2BI	CACGAG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	4 cut(s)	73, 346, 747, 827
BstDEI	CTNAG	3 cut(s)	225, 273, 549
BstF5I	GGATG	3 cut(s)	211, 454, 760
BstKTI	GATC	2 cut(s)	211, 367
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	208, 364
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 876
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	138
BstZI	CGGCCG	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	530
BsuRI	GGCC	5 cut(s)	96, 138, 545, 697, 775
BtrI	CACGTC	2 cut(s)	418, 819
BtsCI	GGATG	3 cut(s)	211, 454, 760
BtsIMutI	CAGTG	2 cut(s)	752, 832
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	3 cut(s)	541, 799, 848
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	3 cut(s)	225, 273, 549
DpnI	GATC	2 cut(s)	210, 366
DpnII	GATC	2 cut(s)	208, 364
EaeI	YGGCCR	2 cut(s)	94, 136
EagI	CGGCCG	1 cut(s)	136
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	854
Eco52I	CGGCCG	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	654, 850
Eco81I	CCTNAGG	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	854
ErhI	CCWWGG	1 cut(s)	854
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	3 cut(s)	544, 802, 851
FatI	CATG	3 cut(s)	540, 798, 847
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	628
FokI	GGATG	3 cut(s)	198, 461, 767
Fsp4HI	GCNGC	1 cut(s)	628
FspBI	CTAG	2 cut(s)	728, 803
GluI	GCNGC	1 cut(s)	628
GsaI	CCCAGC	1 cut(s)	754
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	5 cut(s)	96, 138, 545, 697, 775
Hin1II	CATG	3 cut(s)	544, 802, 851
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	566
Hpy188I	TCNGA	1 cut(s)	661
Hpy188III	TCNNGA	8 cut(s)	5, 23, 37, 285, 340, 440, 488, 882
Hpy8I	GTNNAC	1 cut(s)	566
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	313, 765
HpyCH4III	ACNGT	4 cut(s)	73, 346, 747, 827
HpyCH4IV	ACGT	4 cut(s)	417, 588, 653, 818
HpyCH4V	TGCA	2 cut(s)	107, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 876
HpyF3I	CTNAG	3 cut(s)	225, 273, 549
HpySE526I	ACGT	4 cut(s)	417, 588, 653, 818
Hsp92II	CATG	3 cut(s)	544, 802, 851
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	208, 364
LmnI	GCTCC	2 cut(s)	236, 856
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	728, 803
MaeII	ACGT	4 cut(s)	417, 588, 653, 818
MalI	GATC	2 cut(s)	210, 366
MboI	GATC	2 cut(s)	208, 364
MboII	GAAGA	4 cut(s)	143, 178, 472, 865
MlsI	TGGCCA	1 cut(s)	96
MluCI	AATT	6 cut(s)	329, 499, 662, 688, 810, 837
MluNI	TGGCCA	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	96
MseI	TTAA	2 cut(s)	813, 889
MslI	CAYNNNNRTG	1 cut(s)	846
Msp20I	TGGCCA	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	155, 876
NdeII	GATC	2 cut(s)	208, 364
NlaIII	CATG	3 cut(s)	544, 802, 851
NlaIV	GGNNCC	3 cut(s)	238, 292, 546
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	629
PsiI	TTATAA	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	238, 292, 546
PspPI	GGNCC	1 cut(s)	544
PstNI	CAGNNNCTG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	2 cut(s)	813, 889
SatI	GCNGC	1 cut(s)	628
Sau3AI	GATC	2 cut(s)	208, 364
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	4 cut(s)	3, 338, 488, 880
SmoI	CTYRAG	4 cut(s)	3, 338, 488, 880
Sse9I	AATT	6 cut(s)	329, 499, 662, 688, 810, 837
SspMI	CTAG	2 cut(s)	728, 803
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	854
TaaI	ACNGT	4 cut(s)	73, 346, 747, 827
TaiI	ACGT	4 cut(s)	420, 591, 656, 821
TaqI	TCGA	1 cut(s)	22
TasI	AATT	6 cut(s)	329, 499, 662, 688, 810, 837
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	813, 889
Tru9I	TTAA	2 cut(s)	813, 889
TscAI	CASTG	2 cut(s)	752, 832
TseI	GCWGC	1 cut(s)	627
TspDTI	ATGAA	4 cut(s)	295, 398, 755, 830
TspGWI	ACGGA	2 cut(s)	260, 440
TspRI	CASTG	2 cut(s)	752, 832
XapI	RAATTY	2 cut(s)	499, 688
XspI	CTAG	2 cut(s)	728, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.