Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

21669939 .. 21670910

Gene Structure 972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1183600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGACCCTCTCCATCCCCAGGCGCCACCGCCAGGAGTGGGAGATCGACCCCTCCAAGCTCCTCATCAAGTCTGTCATTGCTCGTGGCACCTTCGGCACCGTCCACTGTGGCATCTACGACGGTCAAGATGTCGCCGTTAAATTGCTTGACTGGGGCGAAGAGGGTCACATGACAGACTCCGAGATTGCTTCTCTAAGGGCAGCTTTTACTCAAGAAGTTGCTGTCTGGCATAAACTAGATCATCCTAATGTTACTAAGTTTATTGGGGCGACAATGGGTTCATCAGATCTACAAATACAGACAGAAAATGGTCAAATTGGCATGCCAACAAATATCTGTTGTGTCGTTGTAGAATATCTTCCTGGGGGTGCTCTAAAATCGTACCTCATAAAGAATAGGAGAAGGAAGTTAGCTTTTAAAGTCGTTGTCCAGCTGGCACTAGATCTTGCTAGAGGGTTGAGCTACCTACACTCACAGAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGCTTCTGGACAAGACTCGTGCGGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCCAATGACATGACTGGGGAGACTGGCACACTAGGTTACATGGCTCCTGAGGTCCTCAATGGCAACCCGTATAACAGGAAATGTGATATGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGCTGTGATATGCCATATCCTGACCTTAGTTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCGGAGATACCAAGATGTTGTCCAAATGCGCTTGCAAACGTAATGAAGCGATGCTGGGACGCGAACCCAGACAAGCGGCCTGAGATGGATGAGGTAGTCACAATGTTGAAGGCGATCGACACATCGAAAGGCGGAGGTATGATCCCTCAAGATCAGTCTCAGGGCTGTTTTTGCTTTCGAAAGAAAAGAGGACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

324

Amino Acids

36.13

Weight (kDa)

8.2

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	22 - 294	2e-60	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	24 - 291	8.5e-49	Protein kinase domain
Kinase-like	PF14531	131 - 240	3e-06	Kinase-like
Pkinase_fungal	PF17667	151 - 226	4.6e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	21, 86, 95
AccII	CGCG	1 cut(s)	836
AciI	CCGC	4 cut(s)	28, 533, 850, 906
AclWI	GGATC	1 cut(s)	910
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	732
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	2 cut(s)	383, 671
AfiI	CCNNNNNNNGG	3 cut(s)	18, 31, 37
AgsI	TTSAA	3 cut(s)	569, 576, 883
AjnI	CCWGG	3 cut(s)	17, 30, 361
AluBI	AGCT	7 cut(s)	58, 203, 413, 433, 462, 572, 752
AluI	AGCT	7 cut(s)	58, 203, 413, 433, 462, 572, 752
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	3 cut(s)	593, 766, 936
AlwI	GGATC	1 cut(s)	910
AoxI	GGCC	1 cut(s)	851
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	766
Asp700I	GAANNNNTTC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	24, 805
AspS9I	GGNCC	2 cut(s)	631, 965
AsuII	TTCGAA	1 cut(s)	952
AvaII	GGWCC	2 cut(s)	631, 965
AxyI	CCTNAGG	1 cut(s)	627
BanI	GGYRCC	3 cut(s)	21, 86, 95
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BauI	CACGAG	3 cut(s)	81, 528, 561
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	2 cut(s)	20, 853
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	3 cut(s)	19, 32, 363
BcoDI	GTCTC	3 cut(s)	593, 766, 936
BfaI	CTAG	4 cut(s)	236, 440, 450, 611
BfoI	RGCGCY	1 cut(s)	25
BglII	AGATCT	2 cut(s)	286, 442
BisI	GCNGC	2 cut(s)	201, 851
BlsI	GCNGC	2 cut(s)	202, 852
Bme1390I	CCNGG	3 cut(s)	19, 32, 363
Bme18I	GGWCC	2 cut(s)	631, 965
BmgT120I	GGNCC	2 cut(s)	631, 965
BmiI	GGNNCC	4 cut(s)	23, 88, 97, 624
BmrFI	CCNGG	3 cut(s)	19, 32, 363
BmrI	ACTGGG	2 cut(s)	160, 603
BmsI	GCATC	3 cut(s)	120, 690, 815
BmuI	ACTGGG	2 cut(s)	160, 603
Bpu14I	TTCGAA	1 cut(s)	952
BpuEI	CTTGAG	2 cut(s)	195, 906
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	766
BsaJI	CCNNGG	2 cut(s)	17, 362
BsaWI	WCCGGW	1 cut(s)	775
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 31, 37
Bse1I	ACTGG	3 cut(s)	155, 598, 607
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	19, 32, 363
BseDI	CCNNGG	2 cut(s)	17, 362
BseGI	GGATG	3 cut(s)	12, 241, 868
BseLI	CCNNNNNNNGG	3 cut(s)	18, 31, 37
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	3 cut(s)	618, 846, 947
BseNI	ACTGG	3 cut(s)	155, 598, 607
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	212
BseYI	CCCAGC	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	836
Bsh1285I	CGRYCG	1 cut(s)	891
BshFI	GGCC	1 cut(s)	853
BshNI	GGYRCC	3 cut(s)	21, 86, 95
BsiEI	CGRYCG	1 cut(s)	891
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	1 cut(s)	776
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	3 cut(s)	18, 31, 37
BsmAI	GTCTC	3 cut(s)	593, 766, 936
BsmFI	GGGAC	1 cut(s)	845
BsnI	GGCC	1 cut(s)	853
Bso31I	GGTCTC	1 cut(s)	766
Bsp119I	TTCGAA	1 cut(s)	952
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
BspACI	CCGC	4 cut(s)	28, 533, 850, 906
BspANI	GGCC	1 cut(s)	853
BspCNI	CTCAG	3 cut(s)	619, 847, 946
BspFNI	CGCG	1 cut(s)	836
BspLI	GGNNCC	4 cut(s)	23, 88, 97, 624
BspPI	GGATC	1 cut(s)	910
BspT104I	TTCGAA	1 cut(s)	952
BspT107I	GGYRCC	3 cut(s)	21, 86, 95
BspTNI	GGTCTC	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	75
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	3 cut(s)	155, 598, 607
BssECI	CCNNGG	2 cut(s)	17, 362
BssMI	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
BssNI	GRCGYC	1 cut(s)	22
BssSI	CACGAG	3 cut(s)	81, 528, 561
Bst2BI	CACGAG	3 cut(s)	81, 528, 561
Bst2UI	CCWGG	3 cut(s)	19, 32, 363
Bst4CI	ACNGT	5 cut(s)	100, 107, 122, 674, 969
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	669
BstBI	TTCGAA	1 cut(s)	952
BstC8I	GCNNGC	3 cut(s)	323, 435, 807
BstDEI	CTNAG	6 cut(s)	194, 255, 627, 728, 855, 933
BstF5I	GGATG	3 cut(s)	12, 241, 868
BstFNI	CGCG	1 cut(s)	836
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 805
BstKTI	GATC	7 cut(s)	45, 241, 289, 445, 891, 918, 928
BstMAI	GTCTC	3 cut(s)	593, 766, 936
BstMBI	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
BstMCI	CGRYCG	1 cut(s)	891
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 945
BstNI	CCWGG	3 cut(s)	19, 32, 363
BstNSI	RCATGY	2 cut(s)	325, 514
BstSCI	CCNGG	3 cut(s)	17, 30, 361
BstUI	CGCG	1 cut(s)	836
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	286, 442
BstYI	RGATCY	2 cut(s)	286, 442
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	853
BtgZI	GCGATG	1 cut(s)	838
BtsCI	GGATG	3 cut(s)	12, 241, 868
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	3 cut(s)	323, 435, 807
CfoI	GCGC	2 cut(s)	24, 805
Cfr13I	GGNCC	2 cut(s)	631, 965
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	2 cut(s)	382, 670
CviAII	CATG	5 cut(s)	169, 322, 511, 589, 619
CviQI	GTAC	2 cut(s)	382, 670
DdeI	CTNAG	6 cut(s)	194, 255, 627, 728, 855, 933
DinI	GGCGCC	1 cut(s)	23
DpnI	GATC	7 cut(s)	44, 240, 288, 444, 890, 917, 927
DpnII	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
DraI	TTTAAA	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	921
Eco31I	GGTCTC	1 cut(s)	766
Eco47I	GGWCC	2 cut(s)	631, 965
Eco57I	CTGAAG	1 cut(s)	732
Eco81I	CCTNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	631
EcoRII	CCWGG	3 cut(s)	17, 30, 361
EgeI	GGCGCC	1 cut(s)	23
EheI	GGCGCC	1 cut(s)	23
FaeI	CATG	5 cut(s)	172, 325, 514, 592, 622
FalI	AAGNNNNNCTT	2 cut(s)	187, 219
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	5 cut(s)	168, 321, 510, 588, 618
Fnu4HI	GCNGC	2 cut(s)	201, 851
FokI	GGATG	2 cut(s)	228, 875
Fsp4HI	GCNGC	2 cut(s)	201, 851
FspBI	CTAG	4 cut(s)	236, 440, 450, 611
GlaI	GCGC	2 cut(s)	23, 804
GluI	GCNGC	2 cut(s)	201, 851
GsaI	CCCAGC	1 cut(s)	832
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	853
HapII	CCGG	1 cut(s)	776
HgaI	GACGC	1 cut(s)	842
HhaI	GCGC	2 cut(s)	24, 805
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	172, 325, 514, 592, 622
Hin6I	GCGC	2 cut(s)	22, 803
HinP1I	GCGC	2 cut(s)	22, 803
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	2 cut(s)	176, 526
HpaII	CCGG	1 cut(s)	776
Hpy166II	GTNNAC	2 cut(s)	103, 487
Hpy188I	TCNGA	3 cut(s)	181, 286, 739
Hpy188III	TCNNGA	7 cut(s)	125, 212, 518, 538, 626, 722, 923
Hpy8I	GTNNAC	2 cut(s)	103, 487
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	3 cut(s)	100, 396, 877
HpyCH4III	ACNGT	5 cut(s)	100, 107, 122, 674, 969
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	1 cut(s)	809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 945
HpyF3I	CTNAG	6 cut(s)	194, 255, 627, 728, 855, 933
HpySE526I	ACGT	1 cut(s)	813
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	5 cut(s)	172, 325, 514, 592, 622
HspAI	GCGC	2 cut(s)	22, 803
KasI	GGCGCC	1 cut(s)	21
Kzo9I	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
LmnI	GCTCC	2 cut(s)	63, 628
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	3 cut(s)	120, 690, 815
MaeI	CTAG	4 cut(s)	236, 440, 450, 611
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	5 cut(s)	164, 250, 614, 742, 871
MalI	GATC	7 cut(s)	44, 240, 288, 444, 890, 917, 927
MboI	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
MboII	GAAGA	3 cut(s)	170, 350, 490
MflI	RGATCY	2 cut(s)	286, 442
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	3 cut(s)	140, 315, 766
Mly113I	GGCGCC	1 cut(s)	22
MlyI	GAGTC	2 cut(s)	170, 520
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	2 cut(s)	138, 417
MslI	CAYNNNNRTG	2 cut(s)	246, 492
MspA1I	CMGCKG	2 cut(s)	433, 752
MspI	CCGG	1 cut(s)	776
MspR9I	CCNGG	3 cut(s)	19, 32, 363
MvaI	CCWGG	3 cut(s)	19, 32, 363
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	2 cut(s)	93, 945
NarI	GGCGCC	1 cut(s)	22
NdeII	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
NlaIII	CATG	5 cut(s)	172, 325, 514, 592, 622
NlaIV	GGNNCC	4 cut(s)	23, 88, 97, 624
NmuCI	GTSAC	3 cut(s)	164, 742, 871
NspI	RCATGY	2 cut(s)	325, 514
NspV	TTCGAA	1 cut(s)	952
PaeI	GCATGC	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	202, 852
Ple19I	CGATCG	1 cut(s)	891
PleI	GAGTC	2 cut(s)	170, 520
PluTI	GGCGCC	1 cut(s)	25
PpsI	GAGTC	2 cut(s)	170, 520
PpuMI	RGGWCCY	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	17, 30, 361
PspFI	CCCAGC	1 cut(s)	828
PspGI	CCWGG	3 cut(s)	17, 30, 361
PspN4I	GGNNCC	4 cut(s)	23, 88, 97, 624
PspPI	GGNCC	2 cut(s)	631, 965
PspPPI	RGGWCCY	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	286, 442
PvuI	CGATCG	1 cut(s)	891
PvuII	CAGCTG	2 cut(s)	433, 752
RsaI	GTAC	2 cut(s)	383, 671
RsaNI	GTAC	2 cut(s)	382, 670
RseI	CAYNNNNRTG	2 cut(s)	246, 492
SaqAI	TTAA	2 cut(s)	138, 417
SatI	GCNGC	2 cut(s)	201, 851
Sau3AI	GATC	7 cut(s)	42, 238, 286, 442, 888, 915, 925
Sau96I	GGNCC	2 cut(s)	631, 965
SchI	GAGTC	2 cut(s)	170, 520
ScrFI	CCNGG	3 cut(s)	19, 32, 363
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	3 cut(s)	120, 690, 815
SfoI	GGCGCC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	952
SinI	GGWCC	2 cut(s)	631, 965
SmiMI	CAYNNNNRTG	2 cut(s)	246, 492
SmlI	CTYRAG	2 cut(s)	210, 921
SmoI	CTYRAG	2 cut(s)	210, 921
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	3 cut(s)	140, 315, 766
SsiI	CCGC	4 cut(s)	28, 533, 850, 906
SspDI	GGCGCC	1 cut(s)	21
SspMI	CTAG	4 cut(s)	236, 440, 450, 611
StyD4I	CCNGG	3 cut(s)	17, 30, 361
TaaI	ACNGT	5 cut(s)	100, 107, 122, 674, 969
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	4 cut(s)	45, 891, 899, 952
TasI	AATT	3 cut(s)	140, 315, 766
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	853
Tru1I	TTAA	2 cut(s)	138, 417
Tru9I	TTAA	2 cut(s)	138, 417
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	3 cut(s)	164, 742, 871
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	3 cut(s)	164, 742, 871
TspDTI	ATGAA	2 cut(s)	270, 833
TspRI	CASTG	1 cut(s)	110
VpaK11BI	GGWCC	2 cut(s)	631, 965
XapI	RAATTY	1 cut(s)	766
XceI	RCATGY	2 cut(s)	325, 514
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	4 cut(s)	236, 440, 450, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.