Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

11940928 .. 11945054

Gene Structure 4127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG140100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCATTTCTTCCCTCTCTTTCTTTGGCCATTTTCTTGACTTCAGTGAAATTACTCGACTGGGGTGAAGAGGGTCACAGGACGGACGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGACCATCCTAATGTTACTAAGTTTATAGGGGCGACAATGGGTTCTTCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTCGTCGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGGCTTTTAAGGTCGTGGTCCAGTTGGCACTAGATCTTGCTAGAGGGTTAAGTTACCTGCACTCACAAAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGCTGCTTGACAAGACACGTACTGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTACAGTTTTGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTCAGCTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCAGACATACCAAGATGTTGTCCAAGTGCTCTAGCAAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAACGGCCAGAGATGGATGAGGTAGTCTCAATGATCGAGGCCATTGACACAACTAAAGGTGGAGGTATGATCCCTCATGATCAGTCTCAGGGTTGTCTCTGCTTCCGCAAGTATAGAGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

293

Amino Acids

32.64

Weight (kDa)

6.98

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	36 - 263	1.5e-56	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	37 - 262	3.6e-45	Protein kinase domain
Kinase-like	PF14531	101 - 210	1.1e-06	Kinase-like
Pkinase_fungal	PF17667	121 - 196	3.7e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	384
AciI	CCGC	1 cut(s)	862
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	2 cut(s)	27, 761
AcsI	RAATTY	2 cut(s)	204, 676
AcuI	CTGAAG	3 cut(s)	27, 177, 642
AfaI	GTAC	2 cut(s)	442, 581
AflIII	ACRYGT	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	479, 486
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	4 cut(s)	113, 482, 642, 662
AluI	AGCT	4 cut(s)	113, 482, 642, 662
Alw21I	GWGCWC	2 cut(s)	283, 715
Alw26I	GTCTC	5 cut(s)	503, 676, 787, 846, 857
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	3 cut(s)	27, 761, 795
ApeKI	GCWGC	2 cut(s)	110, 424
ApoI	RAATTY	2 cut(s)	204, 676
Asp700I	GAANNNNTTC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	337, 875
AsuHPI	GGTGA	2 cut(s)	77, 389
AvaII	GGWCC	2 cut(s)	337, 875
AxyI	CCTNAGG	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	29
BauI	CACGAG	1 cut(s)	471
Bbv12I	GWGCWC	2 cut(s)	283, 715
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	2 cut(s)	122, 411
BccI	CCATC	2 cut(s)	159, 763
BceAI	ACGGC	1 cut(s)	776
BciT130I	CCWGG	1 cut(s)	273
BclI	TGATCA	1 cut(s)	835
BcoDI	GTCTC	5 cut(s)	503, 676, 787, 846, 857
BfaI	CTAG	4 cut(s)	146, 350, 360, 716
BfuAI	ACCTGC	1 cut(s)	384
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	2 cut(s)	111, 425
BlsI	GCNGC	2 cut(s)	112, 426
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	337, 875
BmgT120I	GGNCC	2 cut(s)	337, 875
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	1 cut(s)	273
BmrI	ACTGGG	2 cut(s)	70, 513
BmsI	GCATC	2 cut(s)	600, 733
BmuI	ACTGGG	2 cut(s)	70, 513
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
Bpu10I	CCTNAGC	1 cut(s)	638
BsaAI	YACGTR	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	272
Bse1I	ACTGG	4 cut(s)	65, 340, 508, 517
Bse21I	CCTNAGG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	3 cut(s)	151, 748, 778
BseMII	CTCAG	3 cut(s)	528, 652, 857
BseNI	ACTGG	4 cut(s)	65, 340, 508, 517
BseXI	GCAGC	2 cut(s)	122, 411
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	3 cut(s)	29, 763, 797
BsiHKAI	GWGCWC	2 cut(s)	283, 715
BsmAI	GTCTC	5 cut(s)	503, 676, 787, 846, 857
BsnI	GGCC	3 cut(s)	29, 763, 797
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	2 cut(s)	283, 715
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	352, 789, 825, 835
BspACI	CCGC	1 cut(s)	862
BspANI	GGCC	3 cut(s)	29, 763, 797
BspCNI	CTCAG	3 cut(s)	529, 651, 856
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	1 cut(s)	534
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	676
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	4 cut(s)	65, 340, 508, 517
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	4 cut(s)	352, 789, 825, 835
BssSI	CACGAG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	445, 584, 879
Bst6I	CTCTTC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	579
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	5 cut(s)	104, 165, 537, 638, 843
BstF5I	GGATG	3 cut(s)	151, 748, 778
BstKTI	GATC	4 cut(s)	355, 792, 828, 838
BstMAI	GTCTC	5 cut(s)	503, 676, 787, 846, 857
BstMBI	GATC	4 cut(s)	352, 789, 825, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	3 cut(s)	235, 424, 625
BstSCI	CCNGG	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	122, 411
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	29, 763, 797
BtgZI	GCGATG	1 cut(s)	748
BtsCI	GGATG	3 cut(s)	151, 748, 778
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	233
CciI	TCATGA	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	337, 875
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	441, 580
CviAII	CATG	6 cut(s)	232, 421, 499, 529, 622, 833
CviJI	RGCY	9 cut(s)	29, 113, 323, 482, 533, 642, 662, 763, 797
CviKI_1	RGCY	9 cut(s)	29, 113, 323, 482, 533, 642, 662, 763, 797
CviQI	GTAC	2 cut(s)	441, 580
DdeI	CTNAG	5 cut(s)	104, 165, 537, 638, 843
DpnI	GATC	4 cut(s)	354, 791, 827, 837
DpnII	GATC	4 cut(s)	352, 789, 825, 835
EaeI	YGGCCR	2 cut(s)	27, 761
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	2 cut(s)	337, 875
Eco57I	CTGAAG	3 cut(s)	27, 177, 642
Eco81I	CCTNAGG	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	271
FaeI	CATG	6 cut(s)	235, 424, 502, 532, 625, 836
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	6 cut(s)	231, 420, 498, 528, 621, 832
FbaI	TGATCA	1 cut(s)	835
Fnu4HI	GCNGC	2 cut(s)	111, 425
FokI	GGATG	3 cut(s)	138, 755, 785
Fsp4HI	GCNGC	2 cut(s)	111, 425
FspBI	CTAG	4 cut(s)	146, 350, 360, 716
GluI	GCNGC	2 cut(s)	111, 425
HaeIII	GGCC	3 cut(s)	29, 763, 797
HgaI	GACGC	1 cut(s)	95
Hin1II	CATG	6 cut(s)	235, 424, 502, 532, 625, 836
HindIII	AAGCTT	1 cut(s)	480
HphI	GGTGA	2 cut(s)	77, 389
Hpy166II	GTNNAC	2 cut(s)	397, 580
Hpy188I	TCNGA	4 cut(s)	196, 210, 567, 649
Hpy188III	TCNNGA	5 cut(s)	37, 448, 536, 632, 833
Hpy8I	GTNNAC	2 cut(s)	397, 580
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	306
HpyCH4III	ACNGT	3 cut(s)	445, 584, 879
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	5 cut(s)	104, 165, 537, 638, 843
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	6 cut(s)	235, 424, 502, 532, 625, 836
Ksp22I	TGATCA	1 cut(s)	835
Kzo9I	GATC	4 cut(s)	352, 789, 825, 835
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	2 cut(s)	122, 411
LweI	GCATC	2 cut(s)	600, 733
MaeI	CTAG	4 cut(s)	146, 350, 360, 716
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	6 cut(s)	74, 160, 371, 524, 617, 652
MalI	GATC	4 cut(s)	354, 791, 827, 837
MboI	GATC	4 cut(s)	352, 789, 825, 835
MboII	GAAGA	3 cut(s)	80, 183, 260
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	2 cut(s)	283, 715
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	5 cut(s)	50, 93, 204, 225, 676
MluNI	TGGCCA	1 cut(s)	29
Mox20I	TGGCCA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	327, 368
MslI	CAYNNNNRTG	2 cut(s)	156, 402
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	662
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	4 cut(s)	352, 789, 825, 835
NlaIII	CATG	6 cut(s)	235, 424, 502, 532, 625, 836
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	3 cut(s)	74, 617, 652
NspI	RCATGY	3 cut(s)	235, 424, 625
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	112, 426
Ppu21I	YACGTR	1 cut(s)	440
PsiI	TTATAA	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	2 cut(s)	337, 875
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	2 cut(s)	442, 581
RsaNI	GTAC	2 cut(s)	441, 580
RseI	CAYNNNNRTG	2 cut(s)	156, 402
SaqAI	TTAA	2 cut(s)	327, 368
SatI	GCNGC	2 cut(s)	111, 425
Sau3AI	GATC	4 cut(s)	352, 789, 825, 835
Sau96I	GGNCC	2 cut(s)	337, 875
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	2 cut(s)	283, 715
SfaNI	GCATC	2 cut(s)	600, 733
SinI	GGWCC	2 cut(s)	337, 875
SmiMI	CAYNNNNRTG	2 cut(s)	156, 402
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	5 cut(s)	50, 93, 204, 225, 676
SsiI	CCGC	1 cut(s)	862
SspMI	CTAG	4 cut(s)	146, 350, 360, 716
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	445, 584, 879
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	57, 792
TasI	AATT	5 cut(s)	50, 93, 204, 225, 676
TatI	WGTACW	1 cut(s)	579
Tru1I	TTAA	2 cut(s)	327, 368
Tru9I	TTAA	2 cut(s)	327, 368
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	3 cut(s)	74, 617, 652
TseI	GCWGC	2 cut(s)	110, 424
Tsp45I	GTSAC	3 cut(s)	74, 617, 652
TspDTI	ATGAA	1 cut(s)	743
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	337, 875
XapI	RAATTY	2 cut(s)	204, 676
XceI	RCATGY	3 cut(s)	235, 424, 625
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	4 cut(s)	146, 350, 360, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.