Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

3012364 .. 3016381

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAAGGAGAGCAGTGATGGGTTCGTGAGGGCGGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTGGAGAGACATCTCAACAAGGTTTTGACTTTGGACAAGGCCAAGATGAGAGCAGGAGGAGGAGACCAAGACACCACCAATTCCGCCGCCAACAATCTCAACAGTCTCAACCTCAGCACCAGTCTCAACAACAACACCACCACCGCCTCCGCCCCCGCCGCAACGTCCACTTCCGGCATGACTCTCTCCATCCCCAAGCGCCACCGCCAGGAGTGGGAGATCGACCCTTCCAAGCTCATCATCAAGAGCGTCATTGCACGTGGCACTTTCGGCACCGTCCACCGTGGCGTCTACGACGGCCAAGATGTCGCCGTGAAATTACTCGACTGGGGTGAAGAGGGTAACAGGACGGACGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGACCATCCTAATGTTACTAAGTTTATAGGGGCGACAATGGGATCATCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTCGTCGTGGAATATCTACCTGGAGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGGCTTTCAAGGTCGTGGTCCAGTTGGCACAAGATCTTGCTAGAGGGTTAAGTTACCTACACTCACAAAAGATTGTCCACCGAGATGTAAAGACAGAGAACATGCTGCTCGACAAGACACGTACCGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCATCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTATAGTTTCGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCAGAAGTGACTTCCGCTGTGGTTCGCCAGAATTTGAGACCAGACATACCAAGATGTTGTCCGAGTGCCTTAGCGAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAACGGCCAGAGATGGATGAGGTTGTCTCAATGATCGAGGCCATTGACACAACTAAAGGTGGAGGAATGATCCCTCAAGATCAGTCTCAGGGTTGTCTCTGCTTTCGCAAAAAAAGAGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

405

Amino Acids

44.58

Weight (kDa)

7.51

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	103 - 374	1.6e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	104 - 373	2.2e-49	Protein kinase domain
Pkinase_fungal	PF17667	229 - 307	4.6e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	338
AccI	GTMKAC	1 cut(s)	357
AciI	CCGC	9 cut(s)	32, 150, 153, 210, 216, 222, 225, 271, 993
AclWI	GGATC	3 cut(s)	42, 529, 1153
AcoI	YGGCCR	2 cut(s)	364, 1094
AcsI	RAATTY	2 cut(s)	537, 1009
AcvI	CACGTG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	2 cut(s)	274, 280
AflIII	ACRYGT	1 cut(s)	770
AgsI	TTSAA	2 cut(s)	661, 812
AjnI	CCWGG	2 cut(s)	273, 604
AluBI	AGCT	5 cut(s)	54, 67, 301, 446, 975
AluI	AGCT	5 cut(s)	54, 67, 301, 446, 975
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	9 cut(s)	67, 123, 176, 194, 836, 1009, 1120, 1179, 1190
AlwI	GGATC	3 cut(s)	42, 529, 1153
AoxI	GGCC	4 cut(s)	105, 364, 1094, 1128
ApeKI	GCWGC	3 cut(s)	64, 443, 757
ApoI	RAATTY	2 cut(s)	537, 1009
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	2 cut(s)	670, 1208
AsuHPI	GGTGA	1 cut(s)	410
AvaII	GGWCC	2 cut(s)	670, 1208
AxyI	CCTNAGG	1 cut(s)	870
BanI	GGYRCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	804
BbrPI	CACGTG	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	616
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	76, 455, 744
BccI	CCATC	4 cut(s)	11, 263, 492, 1096
BceAI	ACGGC	3 cut(s)	362, 379, 1109
BciT130I	CCWGG	2 cut(s)	275, 606
BcoDI	GTCTC	9 cut(s)	67, 123, 176, 194, 836, 1009, 1120, 1179, 1190
BfaI	CTAG	2 cut(s)	479, 693
BfoI	RGCGCY	1 cut(s)	268
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	5 cut(s)	65, 153, 225, 444, 758
BlsI	GCNGC	5 cut(s)	66, 154, 226, 445, 759
Bme1390I	CCNGG	2 cut(s)	275, 606
Bme18I	GGWCC	2 cut(s)	670, 1208
BmgT120I	GGNCC	2 cut(s)	670, 1208
BmiI	GGNNCC	2 cut(s)	340, 867
BmrFI	CCNGG	2 cut(s)	275, 606
BmrI	ACTGGG	2 cut(s)	403, 846
BmsI	GCATC	3 cut(s)	824, 933, 1066
BmuI	ACTGGG	2 cut(s)	403, 846
BplI	GAGNNNNNCTC	2 cut(s)	1100, 1132
BpmI	CTGGAG	2 cut(s)	89, 627
Bpu10I	CCTNAGC	3 cut(s)	179, 971, 1048
BpuEI	CTTGAG	2 cut(s)	32, 1149
BsaAI	YACGTR	2 cut(s)	326, 773
BsaHI	GRCGYC	1 cut(s)	354
BsaI	GGTCTC	2 cut(s)	123, 1009
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 280
Bse1I	ACTGG	5 cut(s)	186, 398, 673, 841, 850
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	275, 606
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	5 cut(s)	64, 255, 484, 1081, 1111
BseLI	CCNNNNNNNGG	2 cut(s)	274, 280
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	4 cut(s)	193, 861, 993, 1190
BseNI	ACTGG	5 cut(s)	186, 398, 673, 841, 850
BseRI	GAGGAG	2 cut(s)	138, 141
BseXI	GCAGC	3 cut(s)	76, 455, 744
BshFI	GGCC	4 cut(s)	107, 366, 1096, 1130
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	274, 280
BsmAI	GTCTC	9 cut(s)	67, 123, 176, 194, 836, 1009, 1120, 1179, 1190
BsnI	GGCC	4 cut(s)	107, 366, 1096, 1130
Bso31I	GGTCTC	2 cut(s)	123, 1009
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
BspACI	CCGC	9 cut(s)	32, 150, 153, 210, 216, 222, 225, 271, 993
BspANI	GGCC	4 cut(s)	107, 366, 1096, 1130
BspCNI	CTCAG	4 cut(s)	192, 862, 992, 1189
BspLI	GGNNCC	2 cut(s)	340, 867
BspPI	GGATC	3 cut(s)	42, 529, 1153
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	2 cut(s)	123, 1009
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	5 cut(s)	186, 398, 673, 841, 850
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
BssNI	GRCGYC	1 cut(s)	354
BssSI	CACGAG	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	804
Bst2UI	CCWGG	2 cut(s)	275, 606
Bst4CI	ACNGT	5 cut(s)	170, 343, 350, 778, 1212
Bst6I	CTCTTC	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	354
BstBAI	YACGTR	2 cut(s)	326, 773
BstC8I	GCNNGC	1 cut(s)	566
BstDEI	CTNAG	8 cut(s)	179, 437, 498, 870, 971, 979, 1048, 1176
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	5 cut(s)	64, 255, 484, 1081, 1111
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	8 cut(s)	37, 46, 288, 524, 688, 1125, 1161, 1171
BstMAI	GTCTC	9 cut(s)	67, 123, 176, 194, 836, 1009, 1120, 1179, 1190
BstMBI	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 336, 428
BstNI	CCWGG	2 cut(s)	275, 606
BstNSI	RCATGY	3 cut(s)	568, 757, 958
BstSCI	CCNGG	2 cut(s)	273, 604
BstV1I	GCAGC	3 cut(s)	76, 455, 744
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
Bsu36I	CCTNAGG	1 cut(s)	870
BsuRI	GGCC	4 cut(s)	107, 366, 1096, 1130
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	1081
BtsCI	GGATG	5 cut(s)	64, 255, 484, 1081, 1111
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	566
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	670, 1208
CseI	GACGC	3 cut(s)	304, 343, 428
Csp6I	GTAC	1 cut(s)	774
CviAII	CATG	6 cut(s)	244, 565, 754, 832, 862, 955
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	8 cut(s)	179, 437, 498, 870, 971, 979, 1048, 1176
DpnI	GATC	8 cut(s)	36, 45, 287, 523, 687, 1124, 1160, 1170
DpnII	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
EaeI	YGGCCR	2 cut(s)	364, 1094
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	3 cut(s)	47, 139, 205
Eco31I	GGTCTC	2 cut(s)	123, 1009
Eco47I	GGWCC	2 cut(s)	670, 1208
Eco72I	CACGTG	1 cut(s)	326
Eco81I	CCTNAGG	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	273, 604
FaeI	CATG	6 cut(s)	247, 568, 757, 835, 865, 958
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FatI	CATG	6 cut(s)	243, 564, 753, 831, 861, 954
FauI	CCCGC	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	5 cut(s)	65, 153, 225, 444, 758
FokI	GGATG	5 cut(s)	71, 242, 471, 1088, 1118
Fsp4HI	GCNGC	5 cut(s)	65, 153, 225, 444, 758
FspBI	CTAG	2 cut(s)	479, 693
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	5 cut(s)	65, 153, 225, 444, 758
GsuI	CTGGAG	2 cut(s)	89, 627
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	107, 366, 1096, 1130
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	3 cut(s)	304, 343, 428
HhaI	GCGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	6 cut(s)	247, 568, 757, 835, 865, 958
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	4 cut(s)	234, 346, 358, 730
Hpy188I	TCNGA	6 cut(s)	39, 529, 543, 900, 982, 1041
Hpy188III	TCNNGA	7 cut(s)	25, 49, 310, 781, 869, 965, 1166
Hpy8I	GTNNAC	4 cut(s)	234, 346, 358, 730
Hpy99I	CGWCG	2 cut(s)	365, 593
HpyAV	CCTTC	2 cut(s)	303, 639
HpyCH4III	ACNGT	5 cut(s)	170, 343, 350, 778, 1212
HpyCH4IV	ACGT	3 cut(s)	230, 325, 772
HpyCH4V	TGCA	1 cut(s)	323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 336, 428
HpyF3I	CTNAG	8 cut(s)	179, 437, 498, 870, 971, 979, 1048, 1176
HpySE526I	ACGT	3 cut(s)	230, 325, 772
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	6 cut(s)	247, 568, 757, 835, 865, 958
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
LmnI	GCTCC	1 cut(s)	871
Lsp1109I	GCAGC	3 cut(s)	76, 455, 744
LweI	GCATC	3 cut(s)	824, 933, 1066
MaeI	CTAG	2 cut(s)	479, 693
MaeII	ACGT	3 cut(s)	230, 325, 772
MaeIII	GTNAC	6 cut(s)	407, 493, 704, 857, 950, 985
MalI	GATC	8 cut(s)	36, 45, 287, 523, 687, 1124, 1160, 1170
MboI	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
MboII	GAAGA	1 cut(s)	413
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	6 cut(s)	145, 383, 426, 537, 558, 1009
MlyI	GAGTC	1 cut(s)	241
MseI	TTAA	1 cut(s)	701
MslI	CAYNNNNRTG	2 cut(s)	489, 735
MspA1I	CMGCKG	2 cut(s)	67, 995
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	275, 606
MvaI	CCWGG	2 cut(s)	275, 606
MwoI	GCNNNNNNNGC	3 cut(s)	224, 336, 428
NdeII	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
NlaIII	CATG	6 cut(s)	247, 568, 757, 835, 865, 958
NlaIV	GGNNCC	2 cut(s)	340, 867
NmuCI	GTSAC	2 cut(s)	950, 985
NspI	RCATGY	3 cut(s)	568, 757, 958
PaeI	GCATGC	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	66, 154, 226, 445, 759
PleI	GAGTC	1 cut(s)	241
PmaCI	CACGTG	1 cut(s)	326
PmlI	CACGTG	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	241
Ppu21I	YACGTR	2 cut(s)	326, 773
PsiI	TTATAA	1 cut(s)	632
Psp6I	CCWGG	2 cut(s)	273, 604
PspCI	CACGTG	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	273, 604
PspN4I	GGNNCC	2 cut(s)	340, 867
PspPI	GGNCC	2 cut(s)	670, 1208
PsuI	RGATCY	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
RseI	CAYNNNNRTG	2 cut(s)	489, 735
SaqAI	TTAA	1 cut(s)	701
SatI	GCNGC	5 cut(s)	65, 153, 225, 444, 758
Sau3AI	GATC	8 cut(s)	34, 43, 285, 521, 685, 1122, 1158, 1168
Sau96I	GGNCC	2 cut(s)	670, 1208
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	275, 606
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	824, 933, 1066
SinI	GGWCC	2 cut(s)	670, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	489, 735
SmlI	CTYRAG	2 cut(s)	47, 1164
SmoI	CTYRAG	2 cut(s)	47, 1164
SphI	GCATGC	1 cut(s)	568
Sse9I	AATT	6 cut(s)	145, 383, 426, 537, 558, 1009
SsiI	CCGC	9 cut(s)	32, 150, 153, 210, 216, 222, 225, 271, 993
SspMI	CTAG	2 cut(s)	479, 693
StyD4I	CCNGG	2 cut(s)	273, 604
TaaI	ACNGT	5 cut(s)	170, 343, 350, 778, 1212
TaiI	ACGT	3 cut(s)	233, 328, 775
TaqI	TCGA	4 cut(s)	288, 390, 762, 1125
TasI	AATT	6 cut(s)	145, 383, 426, 537, 558, 1009
TauI	GCSGC	2 cut(s)	155, 227
Tru1I	TTAA	1 cut(s)	701
Tru9I	TTAA	1 cut(s)	701
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	950, 985
TseI	GCWGC	3 cut(s)	64, 443, 757
Tsp45I	GTSAC	2 cut(s)	950, 985
TspDTI	ATGAA	2 cut(s)	17, 1076
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	670, 1208
XapI	RAATTY	2 cut(s)	537, 1009
XceI	RCATGY	3 cut(s)	568, 757, 958
XmiI	GTMKAC	1 cut(s)	357
XspI	CTAG	2 cut(s)	479, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.