Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

62517400 .. 62519271

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG415000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGGAAAAACAAAGAGAAGGGTTTCGTCCGGGGAAGAACAAGATTGACATAAAGAGTATGGACGATCAGCTACAGAAGCATCTTGATAGAGTATCCATCATAGAGATGAAGAAGAAGGAGCAAGACAATTACAGAGTTAGGGAAAGAGTTGGAGCCATGGAAATACAAGAGATACAAGAGTGGGAAATTGATCCCGAAAAACTGGTTATTAATGAACCCTTTGCTCGTGGCACCTTTGCTTCTGTTCACAGAGGCCTTTACAATGGCCAACCAATTGCAGTTAAAGTGTTGGATTGGGGAGAAGAGGGAGAAAGAACAAAAGCCTTGCAAAGAGATTTTCAGCGCGAAGTTTCTGCTTGGTATAAGCTTGAACATGTCAATATTACTAAGTGCATTGGAGCTACAACAGCGATAACTTCAAAAATAAAATTACAAAGTAATAACACGGAGCTAAGTAGTAATTCTGCTTGTGTAATTACCGAGTATCTTTCTGGAGGTACTCTCAAGTCTTACCTCATTAAGTACCGCGAAAGGAAGCTGCCTATCAAGGATGTGTTGCAGCTAGCACTGGATCTTGCGAGAGGATTGAGCTATTTGCACTCGAAGAACATCGTTCACAGAGATGTGAAAACAGAAAATCTACTTCTTGATAAGAATCGGATGGTAAAGATAGCAGATTTTGGTGTTGCACGTCTTCAGGCTTCGAATTTGAGTGAGATGACAGGCAGCACTGGCACCCTTGGATACATGGCCCCTGAGGTATTGGAATCTAAGCCGTATGACAAGAAATGCGATGTTTATAGCTTTGGAATTTGTTTATGGGAGATTTGTTGCTGCCAAATGCCGTACCCTAACTATTCATTTTCAGATTTAACTTCAGCTGTTGTATATAAAAATTTAAGACCACAAATACCTAAAAGTTGTCCAAGCTCCTTGGCCAAAGTAATGAAAAGATGTTGGGATGCAGAACCCAGCAAAAGGCCAGAAATGGATGAAGTTGTTACCATGTTAGAGGCTATTGACAAATCAAAACATCCCCACGGTTGCTTCTGTTTCTCCATGCCTGAGACTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

359

Amino Acids

41.07

Weight (kDa)

8.5

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	71 - 338	1.7e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	77 - 335	1.5e-50	Protein kinase domain
Kinase-like	PF14531	177 - 286	2.3e-06	Kinase-like
Pkinase_fungal	PF17667	190 - 270	9.4e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 737
AccII	CGCG	2 cut(s)	348, 531
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	2 cut(s)	188, 582
AcoI	YGGCCR	2 cut(s)	268, 939
AcsI	RAATTY	3 cut(s)	709, 813, 898
AcuI	CTGAAG	2 cut(s)	683, 864
AfaI	GTAC	3 cut(s)	502, 527, 851
AfiI	CCNNNNNNNGG	1 cut(s)	981
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	374, 423
AjiI	CACGTC	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	1064
AlwI	GGATC	2 cut(s)	188, 582
AoxI	GGCC	5 cut(s)	256, 268, 753, 939, 983
ApeKI	GCWGC	4 cut(s)	541, 562, 729, 837
ApoI	RAATTY	3 cut(s)	709, 813, 898
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	754
AsuC2I	CCSGG	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	707
AsuNHI	GCTAGC	1 cut(s)	565
AxyI	CCTNAGG	1 cut(s)	759
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	2 cut(s)	270, 941
BanI	GGYRCC	2 cut(s)	233, 737
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	689
BbvI	GCAGC	4 cut(s)	528, 574, 741, 824
BccI	CCATC	2 cut(s)	107, 658
BceAI	ACGGC	2 cut(s)	763, 832
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciVI	GTATCC	2 cut(s)	106, 740
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	1064
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	106, 740
BisI	GCNGC	4 cut(s)	542, 563, 730, 838
BlsI	GCNGC	4 cut(s)	543, 564, 731, 839
Bme1390I	CCNGG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	4 cut(s)	157, 235, 739, 756
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	91, 955
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	689
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	5 cut(s)	32, 159, 742, 936, 1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	981
Bse1I	ACTGG	3 cut(s)	210, 576, 739
Bse21I	CCTNAGG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	657
BseDI	CCNNGG	5 cut(s)	32, 159, 742, 936, 1042
BseGI	GGATG	5 cut(s)	559, 669, 970, 1000, 1036
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	981
BseMII	CTCAG	2 cut(s)	750, 1059
BseNI	ACTGG	3 cut(s)	210, 576, 739
BseXI	GCAGC	4 cut(s)	528, 574, 741, 824
BseYI	CCCAGC	1 cut(s)	974
Bsh1236I	CGCG	2 cut(s)	348, 531
BshFI	GGCC	5 cut(s)	258, 270, 755, 941, 985
BshNI	GGYRCC	2 cut(s)	233, 737
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	981
BsmAI	GTCTC	1 cut(s)	1064
BsnI	GGCC	5 cut(s)	258, 270, 755, 941, 985
Bsp119I	TTCGAA	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	67, 193, 574
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	5 cut(s)	258, 270, 755, 941, 985
BspCNI	CTCAG	2 cut(s)	751, 1060
BspFNI	CGCG	2 cut(s)	348, 531
BspLI	GGNNCC	4 cut(s)	157, 235, 739, 756
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	188, 582
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	2 cut(s)	233, 737
BsrI	ACTGG	3 cut(s)	210, 576, 739
BssECI	CCNNGG	5 cut(s)	32, 159, 742, 936, 1042
BssMI	GATC	3 cut(s)	67, 193, 574
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	159, 742, 936
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	1046
Bst6I	CTCTTC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	5 cut(s)	390, 455, 759, 774, 1068
BstDSI	CCRYGG	2 cut(s)	159, 1042
BstF5I	GGATG	5 cut(s)	559, 669, 970, 1000, 1036
BstFNI	CGCG	2 cut(s)	348, 531
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	3 cut(s)	70, 196, 577
BstMAI	GTCTC	1 cut(s)	1064
BstMBI	GATC	3 cut(s)	67, 193, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 410, 735
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	2 cut(s)	348, 531
BstV1I	GCAGC	4 cut(s)	528, 574, 741, 824
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
Bsu36I	CCTNAGG	1 cut(s)	759
BsuI	GTATCC	2 cut(s)	106, 740
BsuRI	GGCC	5 cut(s)	258, 270, 755, 941, 985
BtgI	CCRYGG	2 cut(s)	159, 1042
BtgZI	GCGATG	1 cut(s)	810
BtrI	CACGTC	1 cut(s)	695
BtsCI	GGATG	5 cut(s)	559, 669, 970, 1000, 1036
BtsIMutI	CAGTG	2 cut(s)	569, 732
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	501, 526, 850
CviAII	CATG	5 cut(s)	160, 377, 751, 1009, 1063
CviQI	GTAC	3 cut(s)	501, 526, 850
DdeI	CTNAG	5 cut(s)	390, 455, 759, 774, 1068
DpnI	GATC	3 cut(s)	69, 195, 576
DpnII	GATC	3 cut(s)	67, 193, 574
EaeI	YGGCCR	2 cut(s)	268, 939
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	3 cut(s)	159, 742, 936
Eco147I	AGGCCT	1 cut(s)	258
Eco57I	CTGAAG	2 cut(s)	683, 864
Eco81I	CCTNAGG	1 cut(s)	759
EcoT14I	CCWWGG	3 cut(s)	159, 742, 936
ErhI	CCWWGG	3 cut(s)	159, 742, 936
FaeI	CATG	5 cut(s)	163, 380, 754, 1012, 1066
FatI	CATG	5 cut(s)	159, 376, 750, 1008, 1062
Fnu4HI	GCNGC	4 cut(s)	542, 563, 730, 838
FokI	GGATG	5 cut(s)	566, 676, 977, 1007, 1023
Fsp4HI	GCNGC	4 cut(s)	542, 563, 730, 838
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	4 cut(s)	542, 563, 730, 838
GsaI	CCCAGC	1 cut(s)	978
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	258, 270, 755, 941, 985
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	163, 380, 754, 1012, 1066
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	658, 770
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	250, 619
Hpy188I	TCNGA	2 cut(s)	663, 871
Hpy188III	TCNNGA	4 cut(s)	86, 197, 495, 650
Hpy8I	GTNNAC	2 cut(s)	250, 619
HpyAV	CCTTC	2 cut(s)	14, 112
HpyCH4III	ACNGT	1 cut(s)	1046
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	7 cut(s)	281, 331, 396, 562, 601, 692, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 410, 735
HpyF3I	CTNAG	5 cut(s)	390, 455, 759, 774, 1068
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	5 cut(s)	163, 380, 754, 1012, 1066
HspAI	GCGC	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	67, 193, 574
LmnI	GCTCC	5 cut(s)	121, 155, 401, 451, 938
Lsp1109I	GCAGC	4 cut(s)	528, 574, 741, 824
LweI	GCATC	2 cut(s)	91, 955
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	1003
MalI	GATC	3 cut(s)	69, 195, 576
MboI	GATC	3 cut(s)	67, 193, 574
MboII	GAAGA	6 cut(s)	49, 124, 127, 317, 619, 689
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	574
MlsI	TGGCCA	2 cut(s)	270, 941
MluCI	AATT	9 cut(s)	130, 189, 276, 431, 463, 477, 709, 813, 898
MluNI	TGGCCA	2 cut(s)	270, 941
MmeI	TCCRAC	2 cut(s)	133, 273
MnlI	CCTC	7 cut(s)	248, 301, 491, 527, 578, 754, 1009
Mox20I	TGGCCA	2 cut(s)	270, 941
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	2 cut(s)	270, 941
MseI	TTAA	5 cut(s)	213, 285, 522, 875, 902
MslI	CAYNNNNRTG	2 cut(s)	107, 624
Msp20I	TGGCCA	2 cut(s)	270, 941
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	276
MvnI	CGCG	2 cut(s)	348, 531
MwoI	GCNNNNNNNGC	3 cut(s)	79, 410, 735
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	67, 193, 574
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	163, 380, 754, 1012, 1066
NlaIV	GGNNCC	4 cut(s)	157, 235, 739, 756
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	658, 770
PkrI	GCNGC	4 cut(s)	543, 564, 731, 839
PscI	ACATGT	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	974
PspN4I	GGNNCC	4 cut(s)	157, 235, 739, 756
PspPI	GGNCC	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	3 cut(s)	502, 527, 851
RsaNI	GTAC	3 cut(s)	501, 526, 850
RseI	CAYNNNNRTG	2 cut(s)	107, 624
SaqAI	TTAA	5 cut(s)	213, 285, 522, 875, 902
SatI	GCNGC	4 cut(s)	542, 563, 730, 838
Sau3AI	GATC	3 cut(s)	67, 193, 574
Sau96I	GGNCC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	91, 955
SfcI	CTRYAG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	107, 624
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	9 cut(s)	130, 189, 276, 431, 463, 477, 709, 813, 898
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	1 cut(s)	529
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	3 cut(s)	159, 742, 936
TaaI	ACNGT	1 cut(s)	1046
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	2 cut(s)	605, 707
TasI	AATT	9 cut(s)	130, 189, 276, 431, 463, 477, 709, 813, 898
TfiI	GAWTC	2 cut(s)	658, 770
Tru1I	TTAA	5 cut(s)	213, 285, 522, 875, 902
Tru9I	TTAA	5 cut(s)	213, 285, 522, 875, 902
TscAI	CASTG	2 cut(s)	576, 739
TseI	GCWGC	4 cut(s)	541, 562, 729, 837
TspDTI	ATGAA	5 cut(s)	125, 231, 852, 965, 1011
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	576, 739
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	3 cut(s)	709, 813, 898
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.