FvH4_7g27090

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003110
Physical Location & Seq
Forward (+)
20318602 .. 20319636
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27090.t1

Sequence Viewer

Length: 1035 bp
ATGCAAGAAAAAAGAGAAGAGTCTCGTGCGATGAAGAACAAGATCGACATAAAGAGCATGGACGATAAGCTGAAGAAGCATGTCGATCGAGTATTATGTGACATGGAGAAGAAGAACAAGAAGACAGAGATAGTTGGAGCGATGGCAGTACAGAAGCCACAAGAGTGGGCTCTCAATCCTGCAAAGCTTGTCATAAACAAAGAAGCCTTTGCTCGTGGAGCTTTTGCTACAGTTCACAAAGGTCGTTACAACGACGAAGAAGTTGCCGTTAGAAAGCTAGACTGGGGAGAAGATGAGGGAGGATTCTTGCAAAGAGATTTTCAGCGCGAGATTTCTGTTTGGTACAGCCTTGATCATCCGAACATTACTAAGTGCATCGGAGCTACAACATTAATGGTTGGTAGCTCTGCTTGTGTAGTTGCGGAGTATGTTCCTGGAGGTACACTCAGGTCTCACCTCAAGAAGTTTCGCGAAACGAAGCTGAAATTCAAGGTTGTCTTGCAACTAGCATTGGATCTTGCTAAAGGGTTGAGCTACTTGAACTCCAAGAACATTGTGCACAGAGATCTGAAATCAGAAAATTTGCTTCTTGATAAAAATGGGAGAGTAAAGATAGCAGATTTCGGTTTGTCACGTCTTGAGGCTTCGATATTGAGTGAGATGACAGGCAAAACCGGCACCGCTGCATATATGGCCCCGGAAGTATTGGAGTCTAAGCCTTACAACAAGAAGTGTGACGTTTATAGCTTTGGGATTTGTTTATGGGAGATTTGCAGCTGCCAGATGCCCTACTCAGACTATTCACAAATGTCAGAGGTAACTTCTGCTGTTGTGTACAACAACTTAAGACCACAGATACCGAAAAGTTGTCCAAGCTCCTTGGCCAAAGTCATAAAAAGATGTTGGGATGCAGATCCAAGGAAAAGACCGGATATGGAGGAAGTTGTTACCATGTTAGAGGCGATTGAAAACTCAAAGCATCACCATGGTTGCTTCTGCTTCTCCATGCCGGAGACTAAGTATATAGGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr

Protein Analysis

345

Amino Acids

38.99

Weight (kDa)

8.87

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 67 - 319 2e-64 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 72 - 317 1.4e-50 Protein kinase domain
Kinase-like PF14531 158 - 288 9.5e-07 Kinase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AccII CGCG 2 cut(s) 327, 471
AciI CCGC 2 cut(s) 422, 681
AclWI GGATC 2 cut(s) 522, 908
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 2 cut(s) 485, 580
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 4 cut(s) 150, 344, 442, 836
AflII CTTAAG 1 cut(s) 844
AgsI TTSAA 3 cut(s) 490, 541, 968
AjiI CACGTC 1 cut(s) 635
AjnI CCWGG 1 cut(s) 433
AleI CACNNNNGTG 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 3 cut(s) 27, 456, 1007
Alw44I GTGCAC 1 cut(s) 557
AlwI GGATC 2 cut(s) 522, 908
AoxI GGCC 2 cut(s) 693, 882
ApaLI GTGCAC 1 cut(s) 557
ApeKI GCWGC 3 cut(s) 683, 774, 777
ApoI RAATTY 2 cut(s) 485, 580
AseI ATTAAT 1 cut(s) 392
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 694
AsuC2I CCSGG 1 cut(s) 698
AsuHPI GGTGA 2 cut(s) 446, 974
BaeGI GKGCMC 1 cut(s) 561
BalI TGGCCA 1 cut(s) 884
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 172
BauI CACGAG 2 cut(s) 24, 213
BbsI GAAGAC 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 670, 764, 786
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 251
BcgI CGANNNNNNTGC 4 cut(s) 68, 102, 245, 279
BciT130I CCWGG 1 cut(s) 435
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 698
BcoDI GTCTC 3 cut(s) 27, 456, 1007
BfaI CTAG 3 cut(s) 278, 506, 1033
BfmI CTRYAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 844
BglII AGATCT 1 cut(s) 565
BisI GCNGC 3 cut(s) 684, 775, 778
BlsI GCNGC 3 cut(s) 685, 776, 779
Bme1390I CCNGG 2 cut(s) 435, 698
BmgBI CACGTC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 2 cut(s) 679, 696
BmrFI CCNGG 2 cut(s) 435, 698
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 4 cut(s) 384, 774, 898, 988
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpmI CTGGAG 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 443, 659
BpuMI CCSGG 1 cut(s) 698
BsaBI GATNNNNATC 1 cut(s) 912
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 4 cut(s) 696, 879, 917, 985
BsaWI WCCGGW 1 cut(s) 928
BsaXI ACNNNNNCTCC 4 cut(s) 527, 557, 1004, 1034
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 1 cut(s) 287
Bse8I GATNNNNATC 1 cut(s) 912
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 4 cut(s) 696, 879, 917, 985
BseGI GGATG 2 cut(s) 355, 913
BseJI GATNNNNATC 1 cut(s) 912
BseMII CTCAG 2 cut(s) 460, 807
BseNI ACTGG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 3 cut(s) 670, 764, 786
Bsh1236I CGCG 2 cut(s) 327, 471
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 695, 884
BshNI GGYRCC 1 cut(s) 677
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 4 cut(s) 675, 698, 929, 1010
BsmAI GTCTC 3 cut(s) 27, 456, 1007
BsnI GGCC 2 cut(s) 695, 884
Bso31I GGTCTC 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 172, 561
Bsp1407I TGTACA 1 cut(s) 834
Bsp143I GATC 6 cut(s) 42, 85, 352, 514, 565, 913
Bsp19I CCATGG 1 cut(s) 985
Bsp68I TCGCGA 1 cut(s) 471
BspACI CCGC 2 cut(s) 422, 681
BspANI GGCC 2 cut(s) 695, 884
BspCNI CTCAG 2 cut(s) 459, 806
BspFNI CGCG 2 cut(s) 327, 471
BspLI GGNNCC 2 cut(s) 679, 696
BspPI GGATC 2 cut(s) 522, 908
BspT107I GGYRCC 1 cut(s) 677
BspTI CTTAAG 1 cut(s) 844
BspTNI GGTCTC 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 674
BsrGI TGTACA 1 cut(s) 834
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 4 cut(s) 696, 879, 917, 985
BssMI GATC 6 cut(s) 42, 85, 352, 514, 565, 913
BssSI CACGAG 2 cut(s) 24, 213
BssT1I CCWWGG 3 cut(s) 879, 917, 985
Bst2BI CACGAG 2 cut(s) 24, 213
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 844
BstAUI TGTACA 1 cut(s) 834
BstDEI CTNAG 5 cut(s) 369, 446, 714, 793, 1017
BstDSI CCRYGG 1 cut(s) 985
BstF5I GGATG 2 cut(s) 355, 913
BstFNI CGCG 2 cut(s) 327, 471
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 6 cut(s) 45, 88, 355, 517, 568, 916
BstMAI GTCTC 3 cut(s) 27, 456, 1007
BstMBI GATC 6 cut(s) 42, 85, 352, 514, 565, 913
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 4 cut(s) 76, 218, 675, 692
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 433, 696
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 2 cut(s) 327, 471
BstV1I GCAGC 3 cut(s) 670, 764, 786
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 3 cut(s) 514, 565, 913
BstXI CCANNNNNNTGG 1 cut(s) 165
BstYI RGATCY 3 cut(s) 514, 565, 913
BsuRI GGCC 2 cut(s) 695, 884
BtgI CCRYGG 1 cut(s) 985
BtgZI GCGATG 2 cut(s) 44, 155
BtrI CACGTC 1 cut(s) 635
BtsCI GGATG 2 cut(s) 355, 913
BtuMI TCGCGA 1 cut(s) 471
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 694
Csp6I GTAC 4 cut(s) 149, 343, 441, 835
CviAII CATG 6 cut(s) 58, 80, 103, 952, 986, 1006
CviQI GTAC 4 cut(s) 149, 343, 441, 835
DdeI CTNAG 5 cut(s) 369, 446, 714, 793, 1017
DpnI GATC 6 cut(s) 44, 87, 354, 516, 567, 915
DpnII GATC 6 cut(s) 42, 85, 352, 514, 565, 913
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 3 cut(s) 879, 917, 985
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 3 cut(s) 879, 917, 985
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 3 cut(s) 879, 917, 985
FaeI CATG 6 cut(s) 61, 83, 106, 955, 989, 1009
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FatI CATG 6 cut(s) 57, 79, 102, 951, 985, 1005
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 3 cut(s) 684, 775, 778
FokI GGATG 2 cut(s) 342, 920
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 684, 775, 778
FspBI CTAG 3 cut(s) 278, 506, 1033
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 684, 775, 778
GsuI CTGGAG 1 cut(s) 456
HaeIII GGCC 2 cut(s) 695, 884
HapII CCGG 4 cut(s) 675, 698, 929, 1010
HhaI GCGC 1 cut(s) 327
Hin1II CATG 6 cut(s) 61, 83, 106, 955, 989, 1009
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 3 cut(s) 20, 303, 710
HpaII CCGG 4 cut(s) 675, 698, 929, 1010
HphI GGTGA 2 cut(s) 446, 974
Hpy166II GTNNAC 4 cut(s) 235, 443, 559, 835
Hpy188I TCNGA 6 cut(s) 360, 380, 570, 577, 796, 814
Hpy188III TCNNGA 4 cut(s) 460, 470, 590, 638
Hpy8I GTNNAC 4 cut(s) 235, 443, 559, 835
Hpy99I CGWCG 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 2 cut(s) 634, 738
HpyCH4V TGCA 9 cut(s) 4, 182, 310, 375, 502, 559, 686, 774, 911
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 218, 675, 692
HpyF3I CTNAG 5 cut(s) 369, 446, 714, 793, 1017
HpySE526I ACGT 2 cut(s) 634, 738
Hsp92II CATG 6 cut(s) 61, 83, 106, 955, 989, 1009
HspAI GCGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 6 cut(s) 42, 85, 352, 514, 565, 913
LmnI GCTCC 4 cut(s) 137, 218, 380, 881
Lsp1109I GCAGC 3 cut(s) 670, 764, 786
LweI GCATC 4 cut(s) 384, 774, 898, 988
MaeI CTAG 3 cut(s) 278, 506, 1033
MaeII ACGT 2 cut(s) 634, 738
MaeIII GTNAC 6 cut(s) 98, 245, 630, 734, 817, 946
MalI GATC 6 cut(s) 44, 87, 354, 516, 567, 915
MboI GATC 6 cut(s) 42, 85, 352, 514, 565, 913
MboII GAAGA 8 cut(s) 29, 46, 85, 121, 124, 133, 269, 302
MflI RGATCY 3 cut(s) 514, 565, 913
MhlI GDGCHC 2 cut(s) 172, 561
MlsI TGGCCA 1 cut(s) 884
MluCI AATT 2 cut(s) 485, 580
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 2 cut(s) 29, 719
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 8 cut(s) 289, 293, 431, 467, 634, 808, 931, 952
Mox20I TGGCCA 1 cut(s) 884
MscI TGGCCA 1 cut(s) 884
MseI TTAA 2 cut(s) 392, 845
MslI CAYNNNNRTG 2 cut(s) 163, 984
Msp20I TGGCCA 1 cut(s) 884
MspA1I CMGCKG 2 cut(s) 683, 777
MspCI CTTAAG 1 cut(s) 844
MspI CCGG 4 cut(s) 675, 698, 929, 1010
MspR9I CCNGG 2 cut(s) 435, 698
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 2 cut(s) 327, 471
MwoI GCNNNNNNNGC 4 cut(s) 76, 218, 675, 692
NciI CCSGG 1 cut(s) 698
NcoI CCATGG 1 cut(s) 985
NdeII GATC 6 cut(s) 42, 85, 352, 514, 565, 913
NlaIII CATG 6 cut(s) 61, 83, 106, 955, 989, 1009
NlaIV GGNNCC 2 cut(s) 679, 696
NmuCI GTSAC 3 cut(s) 98, 630, 734
NruI TCGCGA 1 cut(s) 471
NspI RCATGY 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 163
PfeI GAWTC 1 cut(s) 303
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 3 cut(s) 685, 776, 779
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 2 cut(s) 28, 718
PpsI GAGTC 2 cut(s) 28, 718
PshBI ATTAAT 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 679, 696
PspPI GGNCC 1 cut(s) 694
PsuI RGATCY 3 cut(s) 514, 565, 913
PvuI CGATCG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 777
RruI TCGCGA 1 cut(s) 471
RsaI GTAC 4 cut(s) 150, 344, 442, 836
RsaNI GTAC 4 cut(s) 149, 343, 441, 835
RseI CAYNNNNRTG 2 cut(s) 163, 984
SaqAI TTAA 2 cut(s) 392, 845
SatI GCNGC 3 cut(s) 684, 775, 778
Sau3AI GATC 6 cut(s) 42, 85, 352, 514, 565, 913
Sau96I GGNCC 1 cut(s) 694
SchI GAGTC 2 cut(s) 29, 719
ScrFI CCNGG 2 cut(s) 435, 698
SduI GDGCHC 2 cut(s) 172, 561
SfaNI GCATC 4 cut(s) 384, 774, 898, 988
SfcI CTRYAG 1 cut(s) 228
SmiMI CAYNNNNRTG 2 cut(s) 163, 984
SmlI CTYRAG 3 cut(s) 458, 638, 844
SmoI CTYRAG 3 cut(s) 458, 638, 844
Sse9I AATT 2 cut(s) 485, 580
SsiI CCGC 2 cut(s) 422, 681
SspMI CTAG 3 cut(s) 278, 506, 1033
StyD4I CCNGG 2 cut(s) 433, 696
StyI CCWWGG 3 cut(s) 879, 917, 985
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 2 cut(s) 637, 741
TaqI TCGA 4 cut(s) 45, 84, 88, 647
TasI AATT 2 cut(s) 485, 580
TatI WGTACW 2 cut(s) 148, 834
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 392, 845
Tru9I TTAA 2 cut(s) 392, 845
TseFI GTSAC 3 cut(s) 98, 630, 734
TseI GCWGC 3 cut(s) 683, 774, 777
Tsp45I GTSAC 3 cut(s) 98, 630, 734
TspDTI ATGAA 1 cut(s) 47
Vha464I CTTAAG 1 cut(s) 844
VneI GTGCAC 1 cut(s) 557
VspI ATTAAT 1 cut(s) 392
XapI RAATTY 2 cut(s) 485, 580
XceI RCATGY 1 cut(s) 83
XspI CTAG 3 cut(s) 278, 506, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.