Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

27568879 .. 27570524

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1182900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGTTCATCAGATCTACAAATACAGACAGAAAATGGTCAAATTGGCATGCCAACTAATATCTGTTGTGTCGTCGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTCATAAAGAATAGGAGAAGGAAGCTAGCTTTTAAAGTCGTTGTCCAGCTGGCACTAGATCTTGCTAGAGGGTTGAGCTACCTACACTCACAGAAAATTGTTCACAGAGATGTAAAGACGGAGAACATGCTGCTGGACAAGAGTCGTGTAGTCAAGATTGCAGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCCAATGACATGACTGGGGAGACTGGCACGCTTGGTTACATGGCTCCTGAGGTCCTCAATGGCAACCCGTATAACAGGAAATGTGATGTTTACAGTTTCGGCATCTGTTTATGGGAAATATATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCAGCTGTGGTTCGCCAGAACTTGAGACCTGAGATACCTAGATGTTGTCCGAGTGCCCTTGCAAATGTAATGAAGCGATGCTGGGATGCGAACCCAGACAAGCGGCCGGAGATGGATGAGGTAGTCACAATGTTGGAGGCGATTGACACAACGAAAGGCGGAGGTATGATCCCTCAAGATCAGTCTCAGGGCTGTCTTTGCTTTCGAATGAAAAGAGGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

233

Amino Acids

25.86

Weight (kDa)

7.97

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	21 - 203	5.2e-53	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	22 - 200	1.7e-41	Protein kinase domain
Kinase-like	PF14531	40 - 149	1.2e-06	Kinase-like
Pkinase_fungal	PF17667	60 - 135	5.1e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	577, 633
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	296, 303
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	136, 140, 160, 189, 299, 479
AluI	AGCT	6 cut(s)	136, 140, 160, 189, 299, 479
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	3 cut(s)	320, 493, 663
AlwI	GGATC	1 cut(s)	637
AoxI	GGCC	1 cut(s)	578
ApeKI	GCWGC	1 cut(s)	241
Asp700I	GAANNNNTTC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	358, 692
AsuII	TTCGAA	1 cut(s)	679
AsuNHI	GCTAGC	1 cut(s)	136
AvaII	GGWCC	2 cut(s)	358, 692
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	532
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	580
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	320, 493, 663
BfaI	CTAG	4 cut(s)	137, 167, 177, 513
BglII	AGATCT	2 cut(s)	13, 169
BisI	GCNGC	2 cut(s)	242, 578
BlsI	GCNGC	2 cut(s)	243, 579
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	358, 692
BmgT120I	GGNCC	2 cut(s)	358, 692
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	417, 542, 550
BmtI	GCTAGC	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	330
BoxI	GACNNNNGTC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	679
BpuEI	CTTGAG	2 cut(s)	517, 633
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	325, 334
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	89
BseGI	GGATG	2 cut(s)	565, 595
BseMII	CTCAG	3 cut(s)	345, 495, 674
BseNI	ACTGG	2 cut(s)	325, 334
BseSI	GKGCMC	1 cut(s)	532
BseX3I	CGGCCG	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	228
BseYI	CCCAGC	1 cut(s)	555
Bsh1285I	CGRYCG	1 cut(s)	581
BshFI	GGCC	1 cut(s)	580
BsiEI	CGRYCG	1 cut(s)	581
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	581
BsmAI	GTCTC	3 cut(s)	320, 493, 663
BsnI	GGCC	1 cut(s)	580
Bso31I	GGTCTC	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	2 cut(s)	100, 532
Bsp143I	GATC	4 cut(s)	13, 169, 642, 652
BspACI	CCGC	2 cut(s)	577, 633
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	3 cut(s)	346, 496, 673
BspLI	GGNNCC	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	637
BspT104I	TTCGAA	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	325, 334
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	4 cut(s)	13, 169, 642, 652
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	4 cut(s)	50, 138, 162, 335
BstDEI	CTNAG	4 cut(s)	354, 455, 504, 660
BstF5I	GGATG	2 cut(s)	565, 595
BstKTI	GATC	4 cut(s)	16, 172, 645, 655
BstMAI	GTCTC	3 cut(s)	320, 493, 663
BstMBI	GATC	4 cut(s)	13, 169, 642, 652
BstMCI	CGRYCG	1 cut(s)	581
BstMWI	GCNNNNNNNGC	1 cut(s)	672
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	3 cut(s)	52, 241, 442
BstPAI	GACNNNNGTC	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	13, 169
BstYI	RGATCY	2 cut(s)	13, 169
BstZI	CGGCCG	1 cut(s)	578
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	580
BtgZI	GCGATG	1 cut(s)	565
BtsCI	GGATG	2 cut(s)	565, 595
Cac8I	GCNNGC	4 cut(s)	50, 138, 162, 335
Cfr13I	GGNCC	2 cut(s)	358, 692
CviAII	CATG	5 cut(s)	49, 238, 316, 346, 439
CviJI	RGCY	9 cut(s)	136, 140, 160, 189, 299, 350, 479, 580, 666
CviKI_1	RGCY	9 cut(s)	136, 140, 160, 189, 299, 350, 479, 580, 666
DdeI	CTNAG	4 cut(s)	354, 455, 504, 660
DpnI	GATC	4 cut(s)	15, 171, 644, 654
DpnII	GATC	4 cut(s)	13, 169, 642, 652
DraI	TTTAAA	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	578
EagI	CGGCCG	1 cut(s)	578
EciI	GGCGGA	1 cut(s)	648
EclXI	CGGCCG	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	358, 692
Eco52I	CGGCCG	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	459
Eco81I	CCTNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	2 cut(s)	358, 692
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	5 cut(s)	52, 241, 319, 349, 442
FalI	AAGNNNNNCTT	1 cut(s)	679
FatI	CATG	5 cut(s)	48, 237, 315, 345, 438
Fnu4HI	GCNGC	2 cut(s)	242, 578
FokI	GGATG	2 cut(s)	572, 602
Fsp4HI	GCNGC	2 cut(s)	242, 578
FspBI	CTAG	4 cut(s)	137, 167, 177, 513
GluI	GCNGC	2 cut(s)	242, 578
GsaI	CCCAGC	1 cut(s)	559
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	1 cut(s)	581
Hin1II	CATG	5 cut(s)	52, 241, 319, 349, 442
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	581
Hpy166II	GTNNAC	2 cut(s)	214, 397
Hpy188I	TCNGA	3 cut(s)	13, 466, 525
Hpy188III	TCNNGA	4 cut(s)	265, 353, 449, 650
Hpy8I	GTNNAC	2 cut(s)	214, 397
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	2 cut(s)	272, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	672
HpyF3I	CTNAG	4 cut(s)	354, 455, 504, 660
Hsp92II	CATG	5 cut(s)	52, 241, 319, 349, 442
Kzo9I	GATC	4 cut(s)	13, 169, 642, 652
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	3 cut(s)	417, 542, 550
MaeI	CTAG	4 cut(s)	137, 167, 177, 513
MaeIII	GTNAC	4 cut(s)	341, 434, 469, 598
MalI	GATC	4 cut(s)	15, 171, 644, 654
MboI	GATC	4 cut(s)	13, 169, 642, 652
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	2 cut(s)	13, 169
MhlI	GDGCHC	2 cut(s)	100, 532
MluCI	AATT	2 cut(s)	42, 207
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	122, 173, 349, 371, 586, 604, 629, 657, 683
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	160, 479
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	672
NdeII	GATC	4 cut(s)	13, 169, 642, 652
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	5 cut(s)	52, 241, 319, 349, 442
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	3 cut(s)	434, 469, 598
NspI	RCATGY	3 cut(s)	52, 241, 442
NspV	TTCGAA	1 cut(s)	679
PaeI	GCATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	84
PkrI	GCNGC	2 cut(s)	243, 579
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PpuMI	RGGWCCY	2 cut(s)	358, 692
PshAI	GACNNNNGTC	1 cut(s)	252
Psp5II	RGGWCCY	2 cut(s)	358, 692
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	1 cut(s)	555
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	358, 692
PspPPI	RGGWCCY	2 cut(s)	358, 692
PsuI	RGATCY	2 cut(s)	13, 169
PvuII	CAGCTG	2 cut(s)	160, 479
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	242, 578
Sau3AI	GATC	4 cut(s)	13, 169, 642, 652
Sau96I	GGNCC	2 cut(s)	358, 692
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	100, 532
SfaNI	GCATC	3 cut(s)	417, 542, 550
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	2 cut(s)	358, 692
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	2 cut(s)	496, 648
SmoI	CTYRAG	2 cut(s)	496, 648
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	42, 207
SsiI	CCGC	2 cut(s)	577, 633
SspMI	CTAG	4 cut(s)	137, 167, 177, 513
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	679
TasI	AATT	2 cut(s)	42, 207
TauI	GCSGC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseFI	GTSAC	3 cut(s)	434, 469, 598
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	3 cut(s)	434, 469, 598
TspDTI	ATGAA	2 cut(s)	560, 698
TspGWI	ACGGA	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	358, 692
XceI	RCATGY	3 cut(s)	52, 241, 442
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	4 cut(s)	137, 167, 177, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.