Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

31558655 .. 31564954

Gene Structure 6300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1175900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAAGGAAAGCTCAGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCTTAGATGAGCAGCTGGAAAGGCATCTCAACAGGGTCTTGACTTTGGAGAAGAACAAGATCATGAGAGACCCTGAAACCAATTCCAACAGCATCCACCTCACTACCACCTCCAACTCCAATTCAACCACCACCACAACCACCACCTCCACTTCCTCCATGACCCTCTCCATCCCCAGGCGCCACCGCCAGGAGTGGGAGATCGACCCATCCAAGCTCCTCATCAAGTCTGTCATTGCTCGTGGCACCGTCCACCGTGGCAACTACGACGGTCAAGATGTCACCGTTAAATTGCTTGACTGGGGTGAACCGGTGAAGAGGGTCACAGGACAGACTCAGAGATTGCTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

9.1

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	231, 296
AciI	CCGC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	232
AfiI	CCNNNNNNNGG	3 cut(s)	228, 241, 247
AgeI	ACCGGT	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	177
AjnI	CCWGG	2 cut(s)	227, 240
AluBI	AGCT	4 cut(s)	12, 54, 67, 268
AluI	AGCT	4 cut(s)	12, 54, 67, 268
Alw26I	GTCTC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	64
AsiGI	ACCGGT	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	3 cut(s)	325, 368, 376
BanI	GGYRCC	2 cut(s)	231, 296
BauI	CACGAG	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	3 cut(s)	11, 230, 268
BciT130I	CCWGG	2 cut(s)	229, 242
BcoDI	GTCTC	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	2 cut(s)	229, 242
BmiI	GGNNCC	2 cut(s)	233, 298
BmrFI	CCNGG	2 cut(s)	229, 242
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	85, 153
BmuI	ACTGGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	227, 307
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 241, 247
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	229, 242
BseDI	CCNNGG	2 cut(s)	227, 307
BseGI	GGATG	3 cut(s)	144, 222, 260
BseLI	CCNNNNNNNGG	3 cut(s)	228, 241, 247
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	27, 401
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	76
BshNI	GGYRCC	2 cut(s)	231, 296
BshTI	ACCGGT	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	362
BslI	CCNNNNNNNGG	3 cut(s)	228, 241, 247
BsmAI	GTCTC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	34, 43, 111, 252
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	2 cut(s)	26, 400
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	233, 298
BspQI	GCTCTTC	1 cut(s)	44
BspT107I	GGYRCC	2 cut(s)	231, 296
BspTNI	GGTCTC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	227, 307
BssMI	GATC	4 cut(s)	34, 43, 111, 252
BssNI	GRCGYC	1 cut(s)	232
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	229, 242
Bst4CI	ACNGT	4 cut(s)	301, 308, 323, 337
Bst6I	CTCTTC	2 cut(s)	44, 362
BstACI	GRCGYC	1 cut(s)	232
BstDEI	CTNAG	3 cut(s)	13, 55, 387
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	3 cut(s)	144, 222, 260
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	4 cut(s)	37, 46, 114, 255
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	34, 43, 111, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	2 cut(s)	229, 242
BstSCI	CCNGG	2 cut(s)	227, 240
BstV1I	GCAGC	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	3 cut(s)	144, 222, 260
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	361
CviAII	CATG	2 cut(s)	115, 211
CviJI	RGCY	4 cut(s)	12, 54, 67, 268
CviKI_1	RGCY	4 cut(s)	12, 54, 67, 268
DdeI	CTNAG	3 cut(s)	13, 55, 387
DinI	GGCGCC	1 cut(s)	233
DpnI	GATC	4 cut(s)	36, 45, 113, 254
DpnII	GATC	4 cut(s)	34, 43, 111, 252
Eam1104I	CTCTTC	2 cut(s)	44, 362
EarI	CTCTTC	2 cut(s)	44, 362
Eco31I	GGTCTC	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	227, 240
EgeI	GGCGCC	1 cut(s)	233
EheI	GGCGCC	1 cut(s)	233
FaeI	CATG	2 cut(s)	118, 214
FaiI	YATR	2 cut(s)	116, 212
FatI	CATG	2 cut(s)	114, 210
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	3 cut(s)	131, 209, 247
Fsp4HI	GCNGC	1 cut(s)	65
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	235
HapII	CCGG	1 cut(s)	362
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	118, 214
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	325, 368, 376
Hpy166II	GTNNAC	2 cut(s)	304, 359
Hpy188I	TCNGA	4 cut(s)	16, 39, 48, 390
Hpy188III	TCNNGA	3 cut(s)	91, 115, 326
Hpy8I	GTNNAC	2 cut(s)	304, 359
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4III	ACNGT	4 cut(s)	301, 308, 323, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	3 cut(s)	13, 55, 387
Hsp92I	GRCGYC	1 cut(s)	232
Hsp92II	CATG	2 cut(s)	118, 214
HspAI	GCGC	1 cut(s)	232
KasI	GGCGCC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	34, 43, 111, 252
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	85, 153
MaeIII	GTNAC	2 cut(s)	331, 373
MalI	GATC	4 cut(s)	36, 45, 113, 254
MboI	GATC	4 cut(s)	34, 43, 111, 252
MboII	GAAGA	3 cut(s)	61, 115, 379
MluCI	AATT	3 cut(s)	133, 172, 341
Mly113I	GGCGCC	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	162, 189
MnlI	CCTC	8 cut(s)	21, 161, 172, 208, 217, 227, 281, 363
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	229, 242
MvaI	CCWGG	2 cut(s)	229, 242
MwoI	GCNNNNNNNGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	232
NdeII	GATC	4 cut(s)	34, 43, 111, 252
NlaIII	CATG	2 cut(s)	118, 214
NlaIV	GGNNCC	2 cut(s)	233, 298
NmuCI	GTSAC	2 cut(s)	331, 373
PagI	TCATGA	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	1 cut(s)	379
PluTI	GGCGCC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	227, 240
PspGI	CCWGG	2 cut(s)	227, 240
PspN4I	GGNNCC	2 cut(s)	233, 298
PvuII	CAGCTG	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	4 cut(s)	34, 43, 111, 252
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	229, 242
SetI	ASST	7 cut(s)	14, 56, 69, 153, 164, 200, 270
SfaNI	GCATC	2 cut(s)	85, 153
SfoI	GGCGCC	1 cut(s)	233
Sse9I	AATT	3 cut(s)	133, 172, 341
SsiI	CCGC	1 cut(s)	238
SspDI	GGCGCC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	227, 240
TaaI	ACNGT	4 cut(s)	301, 308, 323, 337
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	133, 172, 341
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	2 cut(s)	331, 373
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	331, 373
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.