Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

20324762 .. 20326202

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAGAGAAAAGAGGAGAGTCTCATGCGATGAAGACCAAGATTGATATCAAGAGTATGGACGATAAGCTGAAGAAGCATCTTGATAGAGTATGCATACAAACTGAGATAGAGAAGAAGAAGGGGCTAGAGAATCACAAAGTTCGAGCCATGGAATTCGAAATACAGAGGACACAAGAATGGGCAATAGATCCTGCAACGCTGGTTATAAACAAAGAAGCATTTGCTCGTGGAGCCTTTGCTTCAGTTCACAAAGGTCGCTACCAGGATCAAGAAGTTGCTGTTAGAATATTGGATTGGGGAGAAGACGAGGGAGGATTCTTGCAAACAGATTTTCAGCGCGAGATTTCTATTTGGTACAAGCTCCAACACCCCAACATTACCAAATGCATTGGAGCTACAACAATCGTTAGTAACTCTGCTTGGGTGATCAGCGAGTATGTACCTGGAGGTACTCTCAGGTCTCACCTGAAGAAGTTTCGCGAAAGGAAGCTGCCTTTCAAGGTTGTCTTGCAACTAGCATTGGATCTTGCCAAAGGATTGAGCTATTTGCACTCCAAGAACATTGTGCACAGAGATGTGAAAACAGACAATTTGCTTCTTGATAAAAATGAGAGAGTAAAGATAGCAGATTTCGGTGTGTCACGTCTTGAGGCTTCGATATTGAGCGAGATGACAGGCCACACCGGCACCCTTCAATACATGGCTCCTGAGGTCTTGGAGTCGAAACCATACAACAAGAAGTGTGACGTCTATAGCTTTGGGATTTGTTTATGGGAGATATGCAGCTGCCAGTTGCCCTACTCAGTCTACTCTAAGGATTCATCAGTGTTAGAGGTAACTTCTGCTATTGTGAACAAAAACTTAGACCACAGTAGCAAGCCCAACTGCATCAGTGCCCGAGTTAGGGTTACAGAGCCGCCGTCATCGCGACTTAGTCCGGCAGCCTTCCCCGTCGAGAGGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

323

Amino Acids

36.61

Weight (kDa)

8.8

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 277	3.9e-51	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	77 - 283	8.8e-46	Protein kinase domain
Pkinase_fungal	PF17667	175 - 255	1.7e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AatII	GACGTC	1 cut(s)	753
AccB1I	GGYRCC	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	810
AccII	CGCG	3 cut(s)	342, 483, 931
AciI	CCGC	1 cut(s)	920
AclWI	GGATC	3 cut(s)	185, 276, 534
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	3 cut(s)	92, 228, 491
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	3 cut(s)	359, 444, 454
AfiI	CCNNNNNNNGG	3 cut(s)	906, 907, 960
AgsI	TTSAA	2 cut(s)	502, 698
AjiI	CACGTC	1 cut(s)	647
AjnI	CCWGG	2 cut(s)	264, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	280, 312
AluBI	AGCT	7 cut(s)	70, 364, 398, 493, 546, 759, 789
AluI	AGCT	7 cut(s)	70, 364, 398, 493, 546, 759, 789
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	27, 468
Alw44I	GTGCAC	1 cut(s)	569
AlwI	GGATC	3 cut(s)	185, 276, 534
Ama87I	CYCGRG	1 cut(s)	900
AoxI	GGCC	2 cut(s)	679, 962
ApaLI	GTGCAC	1 cut(s)	569
ApeKI	GCWGC	4 cut(s)	493, 786, 789, 944
ApoI	RAATTY	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	439, 458
AsuII	TTCGAA	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	900
AxyI	CCTNAGG	1 cut(s)	711
BaeGI	GKGCMC	2 cut(s)	573, 901
BanI	GGYRCC	1 cut(s)	689
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	41, 312
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	4 cut(s)	480, 776, 798, 956
BceAI	ACGGC	1 cut(s)	907
BciT130I	CCWGG	2 cut(s)	266, 447
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	27, 468
BfaI	CTAG	2 cut(s)	128, 518
BfmI	CTRYAG	1 cut(s)	754
BglI	GCCNNNNNGGC	1 cut(s)	687
BisI	GCNGC	5 cut(s)	494, 787, 790, 920, 945
BlsI	GCNGC	5 cut(s)	495, 788, 791, 921, 946
Bme1390I	CCNGG	2 cut(s)	266, 447
BmeT110I	CYCGRG	1 cut(s)	900
BmgBI	CACGTC	1 cut(s)	647
BmiI	GGNNCC	3 cut(s)	235, 691, 708
BmrFI	CCNGG	2 cut(s)	266, 447
BmsI	GCATC	2 cut(s)	88, 900
BpiI	GAAGAC	2 cut(s)	41, 312
BplI	GAGNNNNNCTC	2 cut(s)	441, 473
BpmI	CTGGAG	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	750
BsaI	GGTCTC	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	906, 907, 960
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	1 cut(s)	793
Bse21I	CCTNAGG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	266, 447
BseDI	CCNNGG	1 cut(s)	150
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	3 cut(s)	906, 907, 960
BseMII	CTCAG	4 cut(s)	96, 472, 702, 819
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	2 cut(s)	573, 901
BseXI	GCAGC	4 cut(s)	480, 776, 798, 956
Bsh1236I	CGCG	3 cut(s)	342, 483, 931
BshFI	GGCC	2 cut(s)	681, 964
BshNI	GGYRCC	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	900
BsiSI	CCGG	2 cut(s)	687, 941
BslI	CCNNNNNNNGG	3 cut(s)	906, 907, 960
BsmAI	GTCTC	2 cut(s)	27, 468
BsnI	GGCC	2 cut(s)	681, 964
Bso31I	GGTCTC	1 cut(s)	468
BsoBI	CYCGRG	1 cut(s)	900
Bsp119I	TTCGAA	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	573, 901
Bsp143I	GATC	4 cut(s)	190, 268, 429, 526
Bsp19I	CCATGG	1 cut(s)	150
Bsp68I	TCGCGA	2 cut(s)	483, 931
BspACI	CCGC	1 cut(s)	920
BspANI	GGCC	2 cut(s)	681, 964
BspCNI	CTCAG	4 cut(s)	97, 471, 703, 818
BspFNI	CGCG	3 cut(s)	342, 483, 931
BspLI	GGNNCC	3 cut(s)	235, 691, 708
BspPI	GGATC	3 cut(s)	185, 276, 534
BspT104I	TTCGAA	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	793
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	190, 268, 429, 526
BssNI	GRCGYC	1 cut(s)	750
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	228
Bst2UI	CCWGG	2 cut(s)	266, 447
Bst4CI	ACNGT	1 cut(s)	875
BstACI	GRCGYC	1 cut(s)	750
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	881
BstDEI	CTNAG	7 cut(s)	105, 458, 711, 805, 816, 865, 935
BstDSI	CCRYGG	1 cut(s)	150
BstFNI	CGCG	3 cut(s)	342, 483, 931
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	4 cut(s)	193, 271, 432, 529
BstMAI	GTCTC	2 cut(s)	27, 468
BstMBI	GATC	4 cut(s)	190, 268, 429, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 233, 687, 928
BstNI	CCWGG	2 cut(s)	266, 447
BstSCI	CCNGG	2 cut(s)	264, 445
BstSFI	CTRYAG	1 cut(s)	754
BstSLI	GKGCMC	2 cut(s)	573, 901
BstUI	CGCG	3 cut(s)	342, 483, 931
BstV1I	GCAGC	4 cut(s)	480, 776, 798, 956
BstV2I	GAAGAC	2 cut(s)	41, 312
BstX2I	RGATCY	2 cut(s)	190, 526
BstYI	RGATCY	2 cut(s)	190, 526
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	681, 964
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	2 cut(s)	44, 912
BtrI	CACGTC	1 cut(s)	647
BtsIMutI	CAGTG	2 cut(s)	834, 901
BtuMI	TCGCGA	2 cut(s)	483, 931
Cac8I	GCNNGC	1 cut(s)	881
CfoI	GCGC	1 cut(s)	342
Cfr10I	RCCGGY	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	358, 443, 453
CviAII	CATG	4 cut(s)	26, 151, 703, 966
CviQI	GTAC	3 cut(s)	358, 443, 453
DdeI	CTNAG	7 cut(s)	105, 458, 711, 805, 816, 865, 935
DpnI	GATC	4 cut(s)	192, 270, 431, 528
DpnII	GATC	4 cut(s)	190, 268, 429, 526
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	49
Eco57I	CTGAAG	3 cut(s)	92, 228, 491
Eco81I	CCTNAGG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	900
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	264, 445
EcoRV	GATATC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	2 cut(s)	98, 392
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	4 cut(s)	29, 154, 706, 969
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	4 cut(s)	25, 150, 702, 965
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	5 cut(s)	494, 787, 790, 920, 945
Fsp4HI	GCNGC	5 cut(s)	494, 787, 790, 920, 945
FspBI	CTAG	2 cut(s)	128, 518
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	5 cut(s)	494, 787, 790, 920, 945
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	681, 964
HapII	CCGG	2 cut(s)	687, 941
HhaI	GCGC	1 cut(s)	342
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	4 cut(s)	29, 154, 706, 969
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HinfI	GANTC	5 cut(s)	20, 133, 318, 722, 821
HpaII	CCGG	2 cut(s)	687, 941
HphI	GGTGA	2 cut(s)	439, 458
Hpy166II	GTNNAC	4 cut(s)	250, 571, 811, 856
Hpy188III	TCNNGA	9 cut(s)	52, 83, 272, 482, 602, 650, 710, 930, 958
Hpy8I	GTNNAC	4 cut(s)	250, 571, 811, 856
Hpy99I	CGWCG	1 cut(s)	959
HpyAV	CCTTC	3 cut(s)	115, 704, 958
HpyCH4III	ACNGT	1 cut(s)	875
HpyCH4IV	ACGT	2 cut(s)	646, 750
HpyCH4V	TGCA	9 cut(s)	96, 197, 325, 390, 514, 553, 571, 786, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 233, 687, 928
HpyF3I	CTNAG	7 cut(s)	105, 458, 711, 805, 816, 865, 935
HpySE526I	ACGT	2 cut(s)	646, 750
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	4 cut(s)	29, 154, 706, 969
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	190, 268, 429, 526
LmnI	GCTCC	4 cut(s)	233, 369, 395, 712
Lsp1109I	GCAGC	4 cut(s)	480, 776, 798, 956
LweI	GCATC	2 cut(s)	88, 900
MaeI	CTAG	2 cut(s)	128, 518
MaeII	ACGT	2 cut(s)	646, 750
MaeIII	GTNAC	5 cut(s)	413, 642, 746, 838, 910
MalI	GATC	4 cut(s)	192, 270, 431, 528
MboI	GATC	4 cut(s)	190, 268, 429, 526
MboII	GAAGA	7 cut(s)	17, 46, 85, 127, 130, 317, 484
MflI	RGATCY	2 cut(s)	190, 526
MhlI	GDGCHC	2 cut(s)	573, 901
MluCI	AATT	2 cut(s)	155, 592
MlyI	GAGTC	2 cut(s)	29, 731
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	9 cut(s)	8, 162, 304, 308, 443, 646, 706, 829, 954
Mph1103I	ATGCAT	2 cut(s)	98, 392
MslI	CAYNNNNRTG	2 cut(s)	178, 576
MspA1I	CMGCKG	1 cut(s)	789
MspI	CCGG	2 cut(s)	687, 941
MspR9I	CCNGG	2 cut(s)	266, 447
MvaI	CCWGG	2 cut(s)	266, 447
MvnI	CGCG	3 cut(s)	342, 483, 931
MwoI	GCNNNNNNNGC	4 cut(s)	76, 233, 687, 928
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	190, 268, 429, 526
NlaIII	CATG	4 cut(s)	29, 154, 706, 969
NlaIV	GGNNCC	3 cut(s)	235, 691, 708
NmuCI	GTSAC	2 cut(s)	642, 746
NruI	TCGCGA	2 cut(s)	483, 931
NsiI	ATGCAT	2 cut(s)	98, 392
NspV	TTCGAA	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	133, 318, 821
PflFI	GACNNNGTC	1 cut(s)	936
PkrI	GCNGC	5 cut(s)	495, 788, 791, 921, 946
PleI	GAGTC	2 cut(s)	28, 730
PpsI	GAGTC	2 cut(s)	28, 730
PsiI	TTATAA	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	264, 445
PspGI	CCWGG	2 cut(s)	264, 445
PspN4I	GGNNCC	3 cut(s)	235, 691, 708
PsuI	RGATCY	2 cut(s)	190, 526
PsyI	GACNNNGTC	1 cut(s)	936
PvuII	CAGCTG	1 cut(s)	789
RruI	TCGCGA	2 cut(s)	483, 931
RsaI	GTAC	3 cut(s)	359, 444, 454
RsaNI	GTAC	3 cut(s)	358, 443, 453
RseI	CAYNNNNRTG	2 cut(s)	178, 576
SatI	GCNGC	5 cut(s)	494, 787, 790, 920, 945
Sau3AI	GATC	4 cut(s)	190, 268, 429, 526
SchI	GAGTC	2 cut(s)	29, 731
ScrFI	CCNGG	2 cut(s)	266, 447
SduI	GDGCHC	2 cut(s)	573, 901
SfaNI	GCATC	2 cut(s)	88, 900
SfcI	CTRYAG	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	159
SmiMI	CAYNNNNRTG	2 cut(s)	178, 576
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	2 cut(s)	155, 592
SsiI	CCGC	1 cut(s)	920
SspI	AATATT	1 cut(s)	291
SspMI	CTAG	2 cut(s)	128, 518
StyD4I	CCNGG	2 cut(s)	264, 445
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	875
TaiI	ACGT	2 cut(s)	649, 753
TaqI	TCGA	5 cut(s)	145, 159, 659, 725, 957
TasI	AATT	2 cut(s)	155, 592
TauI	GCSGC	1 cut(s)	922
TfiI	GAWTC	3 cut(s)	133, 318, 821
TscAI	CASTG	2 cut(s)	834, 901
TseFI	GTSAC	2 cut(s)	642, 746
TseI	GCWGC	4 cut(s)	493, 786, 789, 944
Tsp45I	GTSAC	2 cut(s)	642, 746
TspDTI	ATGAA	2 cut(s)	47, 813
TspRI	CASTG	2 cut(s)	834, 901
Tth111I	GACNNNGTC	1 cut(s)	936
VneI	GTGCAC	1 cut(s)	569
XapI	RAATTY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	2 cut(s)	128, 518
ZraI	GACGTC	1 cut(s)	751
Zsp2I	ATGCAT	2 cut(s)	98, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.