Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

5158859 .. 5160680

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGAGGGCAAACGAGCAGGCTTTGGAAGTGGAAAGAAGGCTGCGGGCAATATCGACATACAAAGTTTGGACCACCAGTTGGCGAGGCATCTCGACCGACTGTGCTCGATGGAGAAGAAGAAGAAGGAGAAGACGAAAGAGTTGCTTGACGGCCAAGAAAGCCAAGTCATCAGAGACAACAACACCAGAGTTGTTGCGGCCATCAAGCCGGCAAAAGAGGAGGAGGAGTGGCAAATTGTGCCGGATAAACTGGTCGTGAAGCAAGTTTTCGCCCATGGAACGTTTGGTTCCGTCCATAGAGGCCTCTACGACGGCCAACAAGTCGCAGTCAAATTTTTGGAGTGGGGAGAAGAAGGCCAAAACACAAACGCTCAAATAGCTTCTTTGCAAAACGATTTTAGACGGGAGGTTTCTGTTTGGCATAAACTTGATCGACCCCAACATTACCAAGGTACAAAAACCATTCAGTTTTTTTTTTTTTTCTTTTTCTTTCTTTCTTTTCCTTTTATACAATTAAATGTAAATTTTATTTTAATTTTTGTTATGTTATTAAAAAAATATTTAATTTTATTTTTCCAGTTCATTGGAGCTGCAACAAATACATCAAAACTAAAATCCCACAGTAAGGTAGAGATAAGCCCTAACTCCGCCTGCGTTATCGCGGAGTATCTTTCCGGCGGTACTCTAAAATCTCACCTCATAAAGCACCGGGAAAGGAAGCTGCCTCTAAAGACTGTCAAACAAATGGCACTTGATCTTGCTAGAGGGTTGAGTTACTTGCACAGCAAGAATATTGTTCATCGAGATGTGAAATCGGAAAACCTGCTTATTGACAAGGACGGTAGGGTAAAGATAGCGGATTTCGGTGTTGCTCGTTTCCAGTCTTCGAATTCAAGCGAGATGACAGGCTACACCGGCACACCTGGATACATGGCGCCTGAGGTCATAGAAAATAAACCATATGACAAAAGATGTGACGTTTACAGCTTCGGAATTTGCTTATGGGAGATGTATCGCTGCGATATGCCATATCGTAACGTCGGATTCTCAGAATTGGCTTCAGCAGTTGTGAATGAAGGTTGCCCTAGCTCCTTAGCTAAAGTGATGAGCAGGTGCTGGGATTCAAAACCGAACAGAAGGCCAGAAATGGCAGAGGTTATCTCGATGCTGGAGGCAATTGACCTTTCAGAAAATAAAGGTTTGGGTTGCTTCTCCATCTTCAGCTGCAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

412

Amino Acids

46.73

Weight (kDa)

9.08

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	213 - 390	2.4e-45	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	213 - 387	5.1e-42	Protein kinase domain
Pkinase_fungal	PF17667	255 - 330	7.2e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1101
Acc36I	ACCTGC	2 cut(s)	831, 1101
AccB1I	GGYRCC	1 cut(s)	934
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccII	CGCG	1 cut(s)	662
AciI	CCGC	6 cut(s)	44, 197, 648, 662, 678, 857
AclI	AACGTT	1 cut(s)	281
AcoI	YGGCCR	3 cut(s)	151, 198, 313
AcsI	RAATTY	4 cut(s)	332, 523, 889, 993
AcuI	CTGAAG	2 cut(s)	1044, 1204
AcyI	GRCGYC	1 cut(s)	935
AfaI	GTAC	2 cut(s)	454, 682
AfiI	CCNNNNNNNGG	2 cut(s)	79, 625
AgsI	TTSAA	2 cut(s)	894, 1125
AjnI	CCWGG	1 cut(s)	922
AluBI	AGCT	7 cut(s)	380, 590, 721, 987, 1089, 1097, 1224
AluI	AGCT	7 cut(s)	380, 590, 721, 987, 1089, 1097, 1224
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	1116
AoxI	GGCC	6 cut(s)	151, 198, 301, 313, 355, 1139
ApeKI	GCWGC	5 cut(s)	41, 590, 721, 1017, 1224
ApoI	RAATTY	4 cut(s)	332, 523, 889, 993
AspLEI	GCGC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	710
AsuHPI	GGTGA	1 cut(s)	686
AsuII	TTCGAA	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	939
BanI	GGYRCC	1 cut(s)	934
BbsI	GAAGAC	2 cut(s)	137, 876
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	5 cut(s)	28, 577, 708, 1004, 1211
BccI	CCATC	3 cut(s)	103, 209, 1223
BceAI	ACGGC	2 cut(s)	166, 328
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	924
BciVI	GTATCC	1 cut(s)	920
BcnI	CCSGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	762, 1086
BfoI	RGCGCY	1 cut(s)	938
BfuAI	ACCTGC	2 cut(s)	831, 1101
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	6 cut(s)	42, 198, 591, 722, 1018, 1225
BlsI	GCNGC	6 cut(s)	43, 199, 592, 723, 1019, 1226
Bme1390I	CCNGG	2 cut(s)	710, 924
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	289, 936
BmrFI	CCNGG	2 cut(s)	710, 924
BmsI	GCATC	2 cut(s)	97, 1155
BpiI	GAAGAC	2 cut(s)	137, 876
BplI	GAGNNNNNCTC	2 cut(s)	1145, 1177
BpmI	CTGGAG	1 cut(s)	1190
Bpu10I	CCTNAGC	1 cut(s)	1093
Bpu14I	TTCGAA	1 cut(s)	887
BpuMI	CCSGG	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	935
BsaJI	CCNNGG	2 cut(s)	274, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 625
Bse118I	RCCGGY	2 cut(s)	208, 914
Bse1I	ACTGG	4 cut(s)	76, 255, 577, 880
Bse21I	CCTNAGG	1 cut(s)	939
BseBI	CCWGG	1 cut(s)	924
BseDI	CCNNGG	2 cut(s)	274, 448
BseLI	CCNNNNNNNGG	2 cut(s)	79, 625
BseMII	CTCAG	2 cut(s)	930, 1062
BseNI	ACTGG	4 cut(s)	76, 255, 577, 880
BseRI	GAGGAG	3 cut(s)	233, 236, 239
BseXI	GCAGC	5 cut(s)	28, 577, 708, 1004, 1211
BseYI	CCCAGC	1 cut(s)	1116
Bsh1236I	CGCG	1 cut(s)	662
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	6 cut(s)	153, 200, 303, 315, 357, 1141
BshNI	GGYRCC	1 cut(s)	934
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	5 cut(s)	209, 242, 675, 709, 915
BslI	CCNNNNNNNGG	2 cut(s)	79, 625
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	6 cut(s)	153, 200, 303, 315, 357, 1141
Bsp119I	TTCGAA	1 cut(s)	887
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	430, 754
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	6 cut(s)	44, 197, 648, 662, 678, 857
BspANI	GGCC	6 cut(s)	153, 200, 303, 315, 357, 1141
BspCNI	CTCAG	2 cut(s)	931, 1061
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	2 cut(s)	289, 936
BspMI	ACCTGC	2 cut(s)	831, 1101
BspT104I	TTCGAA	1 cut(s)	887
BspT107I	GGYRCC	1 cut(s)	934
BsrFI	RCCGGY	2 cut(s)	208, 914
BsrI	ACTGG	4 cut(s)	76, 255, 577, 880
BssAI	RCCGGY	2 cut(s)	208, 914
BssECI	CCNNGG	2 cut(s)	274, 448
BssMI	GATC	2 cut(s)	430, 754
BssNI	GRCGYC	1 cut(s)	935
BssT1I	CCWWGG	2 cut(s)	274, 448
Bst2UI	CCWGG	1 cut(s)	924
Bst4CI	ACNGT	5 cut(s)	102, 623, 736, 842, 1233
BstACI	GRCGYC	1 cut(s)	935
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstBI	TTCGAA	1 cut(s)	887
BstC8I	GCNNGC	4 cut(s)	19, 46, 210, 652
BstDEI	CTNAG	3 cut(s)	939, 1048, 1093
BstDSI	CCRYGG	1 cut(s)	274
BstFNI	CGCG	1 cut(s)	662
BstH2I	RGCGCY	1 cut(s)	938
BstHHI	GCGC	1 cut(s)	937
BstKTI	GATC	2 cut(s)	433, 757
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	430, 754
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 238, 377, 915
BstNI	CCWGG	1 cut(s)	924
BstSCI	CCNGG	2 cut(s)	708, 922
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	5 cut(s)	28, 577, 708, 1004, 1211
BstV2I	GAAGAC	2 cut(s)	137, 876
BstXI	CCANNNNNNTGG	1 cut(s)	584
Bsu36I	CCTNAGG	1 cut(s)	939
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	6 cut(s)	153, 200, 303, 315, 357, 1141
BtgI	CCRYGG	1 cut(s)	274
BveI	ACCTGC	2 cut(s)	831, 1101
Cac8I	GCNNGC	4 cut(s)	19, 46, 210, 652
CaiI	CAGNNNCTG	1 cut(s)	1116
CfoI	GCGC	1 cut(s)	937
Cfr10I	RCCGGY	2 cut(s)	208, 914
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	453, 681
CviAII	CATG	2 cut(s)	275, 931
CviQI	GTAC	2 cut(s)	453, 681
DdeI	CTNAG	3 cut(s)	939, 1048, 1093
DinI	GGCGCC	1 cut(s)	936
DpnI	GATC	2 cut(s)	432, 756
DpnII	GATC	2 cut(s)	430, 754
EaeI	YGGCCR	3 cut(s)	151, 198, 313
EciI	GGCGGA	1 cut(s)	637
Eco130I	CCWWGG	2 cut(s)	274, 448
Eco147I	AGGCCT	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	1044, 1204
Eco81I	CCTNAGG	1 cut(s)	939
EcoRI	GAATTC	1 cut(s)	889
EcoRII	CCWGG	1 cut(s)	922
EcoT14I	CCWWGG	2 cut(s)	274, 448
EgeI	GGCGCC	1 cut(s)	936
EheI	GGCGCC	1 cut(s)	936
ErhI	CCWWGG	2 cut(s)	274, 448
FaeI	CATG	2 cut(s)	278, 934
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	2 cut(s)	274, 930
FauI	CCCGC	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	961
Fnu4HI	GCNGC	6 cut(s)	42, 198, 591, 722, 1018, 1225
Fsp4HI	GCNGC	6 cut(s)	42, 198, 591, 722, 1018, 1225
FspBI	CTAG	2 cut(s)	762, 1086
GlaI	GCGC	1 cut(s)	936
GluI	GCNGC	6 cut(s)	42, 198, 591, 722, 1018, 1225
GsaI	CCCAGC	1 cut(s)	1120
GsuI	CTGGAG	1 cut(s)	1190
HaeII	RGCGCY	1 cut(s)	938
HaeIII	GGCC	6 cut(s)	153, 200, 303, 315, 357, 1141
HapII	CCGG	5 cut(s)	209, 242, 675, 709, 915
HhaI	GCGC	1 cut(s)	937
Hin1I	GRCGYC	1 cut(s)	935
Hin1II	CATG	2 cut(s)	278, 934
Hin6I	GCGC	1 cut(s)	935
HinP1I	GCGC	1 cut(s)	935
HinfI	GANTC	2 cut(s)	1044, 1121
HpaII	CCGG	5 cut(s)	209, 242, 675, 709, 915
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	1 cut(s)	982
Hpy188I	TCNGA	6 cut(s)	173, 817, 992, 1043, 1051, 1189
Hpy188III	TCNNGA	4 cut(s)	92, 256, 803, 1162
Hpy8I	GTNNAC	1 cut(s)	982
Hpy99I	CGWCG	2 cut(s)	314, 1043
HpyAV	CCTTC	5 cut(s)	31, 118, 347, 1070, 1131
HpyCH4III	ACNGT	5 cut(s)	102, 623, 736, 842, 1233
HpyCH4IV	ACGT	3 cut(s)	281, 978, 1038
HpyCH4V	TGCA	4 cut(s)	388, 593, 781, 1227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 238, 377, 915
HpyF3I	CTNAG	3 cut(s)	939, 1048, 1093
HpySE526I	ACGT	3 cut(s)	281, 978, 1038
Hsp92I	GRCGYC	1 cut(s)	935
Hsp92II	CATG	2 cut(s)	278, 934
HspAI	GCGC	1 cut(s)	935
KasI	GGCGCC	1 cut(s)	934
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	430, 754
LmnI	GCTCC	2 cut(s)	587, 1094
Lsp1109I	GCAGC	5 cut(s)	28, 577, 708, 1004, 1211
LweI	GCATC	2 cut(s)	97, 1155
MaeI	CTAG	2 cut(s)	762, 1086
MaeII	ACGT	3 cut(s)	281, 978, 1038
MaeIII	GTNAC	3 cut(s)	773, 974, 1034
MalI	GATC	2 cut(s)	432, 756
MboI	GATC	2 cut(s)	430, 754
MboII	GAAGA	7 cut(s)	127, 130, 133, 142, 362, 876, 1210
MfeI	CAATTG	1 cut(s)	1176
MhlI	GDGCHC	1 cut(s)	107
Mly113I	GGCGCC	1 cut(s)	935
MmeI	TCCRAC	1 cut(s)	1021
MroNI	GCCGGC	1 cut(s)	208
MseI	TTAA	4 cut(s)	515, 533, 551, 563
MslI	CAYNNNNRTG	1 cut(s)	804
MspA1I	CMGCKG	1 cut(s)	1224
MspI	CCGG	5 cut(s)	209, 242, 675, 709, 915
MspR9I	CCNGG	2 cut(s)	710, 924
MunI	CAATTG	1 cut(s)	1176
MvaI	CCWGG	1 cut(s)	924
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	159, 238, 377, 915
NaeI	GCCGGC	1 cut(s)	210
NarI	GGCGCC	1 cut(s)	935
NciI	CCSGG	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	961
NdeII	GATC	2 cut(s)	430, 754
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	278, 934
NlaIV	GGNNCC	2 cut(s)	289, 936
NmuCI	GTSAC	1 cut(s)	974
NspV	TTCGAA	1 cut(s)	887
PaqCI	CACCTGC	1 cut(s)	1101
PceI	AGGCCT	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	1044, 1121
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	6 cut(s)	43, 199, 592, 723, 1019, 1226
PluTI	GGCGCC	1 cut(s)	938
Psp1406I	AACGTT	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	922
PspFI	CCCAGC	1 cut(s)	1116
PspGI	CCWGG	1 cut(s)	922
PspN4I	GGNNCC	2 cut(s)	289, 936
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	1116
PvuII	CAGCTG	1 cut(s)	1224
RsaI	GTAC	2 cut(s)	454, 682
RsaNI	GTAC	2 cut(s)	453, 681
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	4 cut(s)	515, 533, 551, 563
SatI	GCNGC	6 cut(s)	42, 198, 591, 722, 1018, 1225
Sau3AI	GATC	2 cut(s)	430, 754
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	710, 924
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	2 cut(s)	97, 1155
SfoI	GGCGCC	1 cut(s)	936
SfuI	TTCGAA	1 cut(s)	887
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	804
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	6 cut(s)	44, 197, 648, 662, 678, 857
SspDI	GGCGCC	1 cut(s)	934
SspI	AATATT	2 cut(s)	560, 793
SspMI	CTAG	2 cut(s)	762, 1086
StuI	AGGCCT	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	708, 922
StyI	CCWWGG	2 cut(s)	274, 448
TaaI	ACNGT	5 cut(s)	102, 623, 736, 842, 1233
TaiI	ACGT	3 cut(s)	284, 981, 1041
TaqI	TCGA	7 cut(s)	54, 93, 107, 433, 802, 887, 1163
TaqII	GACCGA	1 cut(s)	111
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	1044, 1121
Tru1I	TTAA	4 cut(s)	515, 533, 551, 563
Tru9I	TTAA	4 cut(s)	515, 533, 551, 563
TseFI	GTSAC	1 cut(s)	974
TseI	GCWGC	5 cut(s)	41, 590, 721, 1017, 1224
Tsp45I	GTSAC	1 cut(s)	974
TspDTI	ATGAA	3 cut(s)	571, 788, 1089
TspGWI	ACGGA	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	4 cut(s)	332, 523, 889, 993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XspI	CTAG	2 cut(s)	762, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.