Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

6357751 .. 6359550

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1091900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGGCAAACGAGCAGGCTTTGGAAGTGGAAAGAAGGCTGCGGGCAATATCGACATACGAAGTTTGGACCAACAGTTGGCGAGGCATCTCGACCGACTATGCTCAATGGAGAAGAAGGAGAAGACGAAAGAGTTGCTTGACGGCCAAGAAAGCAAAGTCATCAGAGACGACAACACCAGAGTTGTTGCGGCCATCAAGCCGGCAAAAGAGGAGGAGGAGTGGCAAATCGTGCCGGATAAACTCTTCGTGAAGCAAGTTTTCGCCCGTGGAACGTTTGGTTCCGTCCATAGAGGCCTCTACGACGGCCAACAAGTCGCAGTCAAATTTTTGGAGTGGGGAGAAGAAGGCCAAAACACAAAAGCTCAAATAGCTTCTTTGCAAAACGATTTTAGACGGGAGGTTTCTGTTTGGCATAAACTTGATCACCCCAACATTACCAAGTTCATTGGAGCCGCAACAAAAACATCAAAACTAAAATCCCACAGTAAGGTAGAGATAAGCCCTAACTCCGCCTGCGTTATCGCGGAGTATCTTTCCGGCGGTACGCTAAAATCTTACCTCATAAAGCACCGGGAAAGGAAGCTACCTCTCAAGACTGTCAAACAAATGGCACTTGATCTTGCTAGAGGGTTGAGTTACTTGCACAGCAAGAATATTGTTCATCGAGATGTGAAATCGGAAAACCTGCTTCTTGACAAGGACGGTAGGGTAAAGATAGCGGATTTCGGCGTTGCTCGTTTCCAGGCTTCGAATTCAAGCGAGATGACAGGCTACACCGGCACAGCTGGATACATGGCGCCTGAGGTCATAGAAAATAAACCATATGACGAAAAATGTGACGTTTACAGCTTCGGAATTTGCTTATGGGAGATGTATCGCTGCGATATGCCATATCGTAACGTCGGATTCTCAGAATTGACTTCAGCAGTTGTGAATGACAATTTAAGACCAGAGATACCGAAGGGTTGCCCTAGCTCCTTAGCTAAAGTGATGATCAGGTGCTGGGATTCAAAACCGAACAGAAGGCCAGAAATGGCAGAGGTTGTCTCGATGCTAGAGGTAATTGACTTTTCAGAAAATAAAGGTTTGGGTTGCTTCTCCATCTTCAGCTGCAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

375

Amino Acids

42.11

Weight (kDa)

8.95

Isoelectric Point (pI)

39.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	85 - 353	1.5e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	89 - 351	5.2e-54	Protein kinase domain
Kinase-like	PF14531	166 - 292	2.3e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	799
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccII	CGCG	1 cut(s)	527
AciI	CCGC	7 cut(s)	44, 191, 456, 513, 527, 543, 722
AclI	AACGTT	1 cut(s)	275
AcoI	YGGCCR	3 cut(s)	145, 192, 307
AcsI	RAATTY	3 cut(s)	326, 754, 858
AcuI	CTGAAG	2 cut(s)	909, 1093
AcyI	GRCGYC	1 cut(s)	800
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	79, 490
AgsI	TTSAA	2 cut(s)	759, 1014
AjnI	CCWGG	1 cut(s)	744
AluBI	AGCT	8 cut(s)	365, 374, 586, 788, 852, 978, 986, 1113
AluI	AGCT	8 cut(s)	365, 374, 586, 788, 852, 978, 986, 1113
Alw26I	GTCTC	2 cut(s)	162, 1054
AlwNI	CAGNNNCTG	1 cut(s)	1005
AoxI	GGCC	6 cut(s)	145, 192, 295, 307, 349, 1028
ApeKI	GCWGC	3 cut(s)	41, 882, 1113
ApoI	RAATTY	3 cut(s)	326, 754, 858
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	799
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	28, 869, 1100
BccI	CCATC	2 cut(s)	203, 1112
BceAI	ACGGC	2 cut(s)	160, 322
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	746
BciVI	GTATCC	1 cut(s)	785
BclI	TGATCA	2 cut(s)	424, 996
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	2 cut(s)	162, 1054
BfaI	CTAG	3 cut(s)	627, 975, 1058
BfoI	RGCGCY	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	696
BfuI	GTATCC	1 cut(s)	785
BisI	GCNGC	5 cut(s)	42, 192, 456, 883, 1114
BlsI	GCNGC	5 cut(s)	43, 193, 457, 884, 1115
Bme1390I	CCNGG	2 cut(s)	575, 746
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	3 cut(s)	283, 454, 801
BmrFI	CCNGG	2 cut(s)	575, 746
BmsI	GCATC	2 cut(s)	97, 1044
BpiI	GAAGAC	1 cut(s)	131
BplI	GAGNNNNNCTC	2 cut(s)	1034, 1066
Bpu10I	CCTNAGC	1 cut(s)	982
Bpu14I	TTCGAA	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	800
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 490
Bse118I	RCCGGY	2 cut(s)	202, 779
Bse21I	CCTNAGG	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	79, 490
BseMII	CTCAG	2 cut(s)	795, 927
BseRI	GAGGAG	3 cut(s)	227, 230, 233
BseXI	GCAGC	3 cut(s)	28, 869, 1100
BseYI	CCCAGC	1 cut(s)	1005
Bsh1236I	CGCG	1 cut(s)	527
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	6 cut(s)	147, 194, 297, 309, 351, 1030
BshNI	GGYRCC	1 cut(s)	799
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	5 cut(s)	203, 236, 540, 574, 780
BslI	CCNNNNNNNGG	2 cut(s)	79, 490
BsmAI	GTCTC	2 cut(s)	162, 1054
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	6 cut(s)	147, 194, 297, 309, 351, 1030
Bsp119I	TTCGAA	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	424, 619, 996
BspACI	CCGC	7 cut(s)	44, 191, 456, 513, 527, 543, 722
BspANI	GGCC	6 cut(s)	147, 194, 297, 309, 351, 1030
BspCNI	CTCAG	2 cut(s)	796, 926
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	3 cut(s)	283, 454, 801
BspMI	ACCTGC	1 cut(s)	696
BspT104I	TTCGAA	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	799
BsrFI	RCCGGY	2 cut(s)	202, 779
BssAI	RCCGGY	2 cut(s)	202, 779
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	424, 619, 996
BssNI	GRCGYC	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	5 cut(s)	78, 488, 601, 707, 1122
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	800
BstAPI	GCANNNNNTGC	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	752
BstC8I	GCNNGC	4 cut(s)	19, 46, 204, 517
BstDEI	CTNAG	3 cut(s)	804, 913, 982
BstDSI	CCRYGG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	527
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	3 cut(s)	427, 622, 999
BstMAI	GTCTC	2 cut(s)	162, 1054
BstMBI	GATC	3 cut(s)	424, 619, 996
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 232, 371, 780
BstNI	CCWGG	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	573, 744
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	28, 869, 1100
BstV2I	GAAGAC	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	6 cut(s)	147, 194, 297, 309, 351, 1030
BtgI	CCRYGG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	696
Cac8I	GCNNGC	4 cut(s)	19, 46, 204, 517
CaiI	CAGNNNCTG	1 cut(s)	1005
CfoI	GCGC	1 cut(s)	802
Cfr10I	RCCGGY	2 cut(s)	202, 779
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	1 cut(s)	796
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	3 cut(s)	804, 913, 982
DinI	GGCGCC	1 cut(s)	801
DpnI	GATC	3 cut(s)	426, 621, 998
DpnII	GATC	3 cut(s)	424, 619, 996
EaeI	YGGCCR	3 cut(s)	145, 192, 307
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EciI	GGCGGA	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	909, 1093
Eco81I	CCTNAGG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	744
EgeI	GGCGCC	1 cut(s)	801
EheI	GGCGCC	1 cut(s)	801
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	1 cut(s)	799
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	795
FauI	CCCGC	1 cut(s)	37
FauNDI	CATATG	1 cut(s)	826
FbaI	TGATCA	2 cut(s)	424, 996
Fnu4HI	GCNGC	5 cut(s)	42, 192, 456, 883, 1114
Fsp4HI	GCNGC	5 cut(s)	42, 192, 456, 883, 1114
FspBI	CTAG	3 cut(s)	627, 975, 1058
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	5 cut(s)	42, 192, 456, 883, 1114
GsaI	CCCAGC	1 cut(s)	1009
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	6 cut(s)	147, 194, 297, 309, 351, 1030
HapII	CCGG	5 cut(s)	203, 236, 540, 574, 780
HhaI	GCGC	1 cut(s)	802
Hin1I	GRCGYC	1 cut(s)	800
Hin1II	CATG	1 cut(s)	799
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HinfI	GANTC	2 cut(s)	909, 1010
HpaII	CCGG	5 cut(s)	203, 236, 540, 574, 780
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	6 cut(s)	167, 682, 857, 908, 916, 1078
Hpy188III	TCNNGA	6 cut(s)	92, 250, 595, 668, 695, 1051
Hpy8I	GTNNAC	1 cut(s)	847
Hpy99I	CGWCG	2 cut(s)	308, 908
HpyAV	CCTTC	5 cut(s)	31, 112, 341, 958, 1020
HpyCH4III	ACNGT	5 cut(s)	78, 488, 601, 707, 1122
HpyCH4IV	ACGT	3 cut(s)	275, 843, 903
HpyCH4V	TGCA	3 cut(s)	382, 646, 1116
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 232, 371, 780
HpyF3I	CTNAG	3 cut(s)	804, 913, 982
HpySE526I	ACGT	3 cut(s)	275, 843, 903
Hsp92I	GRCGYC	1 cut(s)	800
Hsp92II	CATG	1 cut(s)	799
HspAI	GCGC	1 cut(s)	800
KasI	GGCGCC	1 cut(s)	799
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Ksp22I	TGATCA	2 cut(s)	424, 996
Kzo9I	GATC	3 cut(s)	424, 619, 996
LmnI	GCTCC	2 cut(s)	452, 983
Lsp1109I	GCAGC	3 cut(s)	28, 869, 1100
LweI	GCATC	2 cut(s)	97, 1044
MaeI	CTAG	3 cut(s)	627, 975, 1058
MaeII	ACGT	3 cut(s)	275, 843, 903
MaeIII	GTNAC	3 cut(s)	638, 839, 899
MalI	GATC	3 cut(s)	426, 621, 998
MboI	GATC	3 cut(s)	424, 619, 996
MboII	GAAGA	5 cut(s)	127, 136, 238, 356, 1099
MluCI	AATT	6 cut(s)	326, 754, 858, 917, 943, 1065
Mly113I	GGCGCC	1 cut(s)	800
MmeI	TCCRAC	1 cut(s)	886
MroNI	GCCGGC	1 cut(s)	202
MseI	TTAA	1 cut(s)	947
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	788, 1113
MspI	CCGG	5 cut(s)	203, 236, 540, 574, 780
MspR9I	CCNGG	2 cut(s)	575, 746
MvaI	CCWGG	1 cut(s)	746
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	4 cut(s)	153, 232, 371, 780
NaeI	GCCGGC	1 cut(s)	204
NarI	GGCGCC	1 cut(s)	800
NciI	CCSGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	826
NdeII	GATC	3 cut(s)	424, 619, 996
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	799
NlaIV	GGNNCC	3 cut(s)	283, 454, 801
NmuCI	GTSAC	1 cut(s)	839
NspV	TTCGAA	1 cut(s)	752
PceI	AGGCCT	1 cut(s)	297
PdiI	GCCGGC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	909, 1010
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	43, 193, 457, 884, 1115
PluTI	GGCGCC	1 cut(s)	803
Psp1406I	AACGTT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	744
PspFI	CCCAGC	1 cut(s)	1005
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	3 cut(s)	283, 454, 801
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	1005
PvuII	CAGCTG	2 cut(s)	788, 1113
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	947
SatI	GCNGC	5 cut(s)	42, 192, 456, 883, 1114
Sau3AI	GATC	3 cut(s)	424, 619, 996
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	575, 746
SfaNI	GCATC	2 cut(s)	97, 1044
SfoI	GGCGCC	1 cut(s)	801
SfuI	TTCGAA	1 cut(s)	752
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	6 cut(s)	326, 754, 858, 917, 943, 1065
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	7 cut(s)	44, 191, 456, 513, 527, 543, 722
SspDI	GGCGCC	1 cut(s)	799
SspI	AATATT	1 cut(s)	658
SspMI	CTAG	3 cut(s)	627, 975, 1058
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	573, 744
TaaI	ACNGT	5 cut(s)	78, 488, 601, 707, 1122
TaiI	ACGT	3 cut(s)	278, 846, 906
TaqI	TCGA	5 cut(s)	54, 93, 667, 752, 1052
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	6 cut(s)	326, 754, 858, 917, 943, 1065
TauI	GCSGC	2 cut(s)	194, 458
TfiI	GAWTC	2 cut(s)	909, 1010
Tru1I	TTAA	1 cut(s)	947
Tru9I	TTAA	1 cut(s)	947
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	3 cut(s)	41, 882, 1113
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	2 cut(s)	436, 653
TspGWI	ACGGA	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	3 cut(s)	326, 754, 858
XspI	CTAG	3 cut(s)	627, 975, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.