Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011390.1

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

20879 .. 22389

Gene Structure 1511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011390.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggaggaagaacaaagagaagggtttcgtccggggaagaacaagattgacataaagagtatggacgatcagctacagaagcatcttgatagagtatccatcatagagatgaagaagaaggagcaagacaattacagagttagggaaagagttggagccatggaaatacaagagatacaagagtgggaaatcaatcccgaaaaactggttattaatgaaccctttgctcgtggtacctttgcttctgttcacagaggcctttacaatggccaaccaattgcagttaaagtgttggattggggagaagagggagaaagaacaaaagccttgcaaagagattttcagcgcgaagtttctgcttggtataagcttgaacatgtcaatattactaagtgcattggagctacaacagcgataacttcaaaattaaaattacaaagtaataacacggagctaagtagtaattctgcttgtgtaattaccgagtatctttctggaggtactctcaagtcttacctcattaagtacagcgaaaggaagctgcctatcgaggatgtgttgcagctagcactggatcttgcgagaggattgagctatttgcactcgaagaacatcgttcacagagatgtgaaaacagaaaatctacttcttgataagaatcggatggtaaagatagcagactttggtgttgcacgtcttcaggcttcgaatttgagtgagatgacaggcagcactggcacccttggatacatggcccctgagaatttaagaccacaaatacctaaaagttgtccaagctccttggccaaagtaatgaaaagatgttgggatgcagaacccagcaaaaggccagaaatggatgaagttgttaccatgttagaggctattgacaaatcaaaacatccccacggttgcttctgtttctccatgcctgagactaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

314

Amino Acids

35.79

Weight (kDa)

8.1

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	2 cut(s)	233, 737
AccII	CGCG	1 cut(s)	348
AclWI	GGATC	1 cut(s)	582
AcoI	YGGCCR	2 cut(s)	268, 804
AcsI	RAATTY	2 cut(s)	709, 763
AcuI	CTGAAG	1 cut(s)	683
AfaI	GTAC	3 cut(s)	235, 502, 527
AfiI	CCNNNNNNNGG	1 cut(s)	846
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	374, 423
AjiI	CACGTC	1 cut(s)	695
AluBI	AGCT	8 cut(s)	73, 370, 404, 454, 541, 565, 594, 798
AluI	AGCT	8 cut(s)	73, 370, 404, 454, 541, 565, 594, 798
Alw26I	GTCTC	1 cut(s)	929
AlwI	GGATC	1 cut(s)	582
AoxI	GGCC	5 cut(s)	256, 268, 753, 804, 848
ApeKI	GCWGC	3 cut(s)	541, 562, 729
ApoI	RAATTY	2 cut(s)	709, 763
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	754
AsuC2I	CCSGG	1 cut(s)	33
AsuII	TTCGAA	1 cut(s)	707
AsuNHI	GCTAGC	1 cut(s)	565
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	2 cut(s)	270, 806
BanI	GGYRCC	2 cut(s)	233, 737
BarI	GAAGNNNNNNTAC	2 cut(s)	226, 258
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	689
BbvI	GCAGC	3 cut(s)	528, 574, 741
BccI	CCATC	2 cut(s)	107, 658
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciVI	GTATCC	2 cut(s)	106, 740
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	929
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	106, 740
BisI	GCNGC	3 cut(s)	542, 563, 730
BlsI	GCNGC	3 cut(s)	543, 564, 731
Bme1390I	CCNGG	1 cut(s)	33
BmgBI	CACGTC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	4 cut(s)	157, 235, 739, 756
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	91, 820
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	689
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	5 cut(s)	32, 159, 742, 801, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	3 cut(s)	210, 576, 739
Bse8I	GATNNNNATC	1 cut(s)	657
BseDI	CCNNGG	5 cut(s)	32, 159, 742, 801, 907
BseGI	GGATG	5 cut(s)	559, 669, 835, 865, 901
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMII	CTCAG	2 cut(s)	750, 924
BseNI	ACTGG	3 cut(s)	210, 576, 739
BseXI	GCAGC	3 cut(s)	528, 574, 741
BseYI	CCCAGC	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	5 cut(s)	258, 270, 755, 806, 850
BshNI	GGYRCC	2 cut(s)	233, 737
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	1 cut(s)	929
BsnI	GGCC	5 cut(s)	258, 270, 755, 806, 850
Bsp119I	TTCGAA	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	67, 574
Bsp19I	CCATGG	1 cut(s)	159
BspANI	GGCC	5 cut(s)	258, 270, 755, 806, 850
BspCNI	CTCAG	2 cut(s)	751, 925
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	157, 235, 739, 756
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	582
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	2 cut(s)	233, 737
BsrI	ACTGG	3 cut(s)	210, 576, 739
BssECI	CCNNGG	5 cut(s)	32, 159, 742, 801, 907
BssMI	GATC	2 cut(s)	67, 574
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	159, 742, 801
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	911
Bst6I	CTCTTC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	4 cut(s)	390, 455, 759, 933
BstDSI	CCRYGG	2 cut(s)	159, 907
BstF5I	GGATG	5 cut(s)	559, 669, 835, 865, 901
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	70, 577
BstMAI	GTCTC	1 cut(s)	929
BstMBI	GATC	2 cut(s)	67, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 410, 735
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	528, 574, 741
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuI	GTATCC	2 cut(s)	106, 740
BsuRI	GGCC	5 cut(s)	258, 270, 755, 806, 850
BtgI	CCRYGG	2 cut(s)	159, 907
BtrI	CACGTC	1 cut(s)	695
BtsCI	GGATG	5 cut(s)	559, 669, 835, 865, 901
BtsIMutI	CAGTG	2 cut(s)	569, 732
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	234, 501, 526
CviAII	CATG	5 cut(s)	160, 377, 751, 874, 928
CviQI	GTAC	3 cut(s)	234, 501, 526
DdeI	CTNAG	4 cut(s)	390, 455, 759, 933
DpnI	GATC	2 cut(s)	69, 576
DpnII	GATC	2 cut(s)	67, 574
EaeI	YGGCCR	2 cut(s)	268, 804
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	3 cut(s)	159, 742, 801
Eco147I	AGGCCT	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	683
EcoT14I	CCWWGG	3 cut(s)	159, 742, 801
ErhI	CCWWGG	3 cut(s)	159, 742, 801
FaeI	CATG	5 cut(s)	163, 380, 754, 877, 931
FaiI	YATR	9 cut(s)	53, 62, 104, 161, 366, 378, 752, 875, 929
FatI	CATG	5 cut(s)	159, 376, 750, 873, 927
Fnu4HI	GCNGC	3 cut(s)	542, 563, 730
FokI	GGATG	5 cut(s)	566, 676, 842, 872, 888
Fsp4HI	GCNGC	3 cut(s)	542, 563, 730
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	542, 563, 730
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	258, 270, 755, 806, 850
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	163, 380, 754, 877, 931
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	250, 619
Hpy188I	TCNGA	1 cut(s)	663
Hpy188III	TCNNGA	4 cut(s)	86, 197, 495, 650
Hpy8I	GTNNAC	2 cut(s)	250, 619
HpyAV	CCTTC	2 cut(s)	14, 112
HpyCH4III	ACNGT	1 cut(s)	911
HpyCH4IV	ACGT	1 cut(s)	694
HpyCH4V	TGCA	7 cut(s)	281, 331, 396, 562, 601, 692, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 410, 735
HpyF3I	CTNAG	4 cut(s)	390, 455, 759, 933
HpySE526I	ACGT	1 cut(s)	694
Hsp92II	CATG	5 cut(s)	163, 380, 754, 877, 931
HspAI	GCGC	1 cut(s)	346
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	67, 574
LmnI	GCTCC	5 cut(s)	121, 155, 401, 451, 803
Lsp1109I	GCAGC	3 cut(s)	528, 574, 741
LweI	GCATC	2 cut(s)	91, 820
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	1 cut(s)	694
MaeIII	GTNAC	1 cut(s)	868
MalI	GATC	2 cut(s)	69, 576
MboI	GATC	2 cut(s)	67, 574
MboII	GAAGA	7 cut(s)	20, 49, 124, 127, 317, 619, 689
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	1 cut(s)	574
MlsI	TGGCCA	2 cut(s)	270, 806
MluCI	AATT	8 cut(s)	130, 276, 425, 431, 463, 477, 709, 763
MluNI	TGGCCA	2 cut(s)	270, 806
MmeI	TCCRAC	2 cut(s)	133, 273
MnlI	CCTC	7 cut(s)	248, 301, 491, 527, 544, 578, 874
Mox20I	TGGCCA	2 cut(s)	270, 806
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	2 cut(s)	270, 806
MseI	TTAA	5 cut(s)	213, 285, 428, 522, 767
MslI	CAYNNNNRTG	2 cut(s)	107, 624
Msp20I	TGGCCA	2 cut(s)	270, 806
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	79, 410, 735
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	67, 574
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	5 cut(s)	163, 380, 754, 877, 931
NlaIV	GGNNCC	4 cut(s)	157, 235, 739, 756
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	707
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	543, 564, 731
PscI	ACATGT	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	839
PspN4I	GGNNCC	4 cut(s)	157, 235, 739, 756
PspPI	GGNCC	1 cut(s)	754
PsuI	RGATCY	1 cut(s)	574
RsaI	GTAC	3 cut(s)	235, 502, 527
RsaNI	GTAC	3 cut(s)	234, 501, 526
RseI	CAYNNNNRTG	2 cut(s)	107, 624
SaqAI	TTAA	5 cut(s)	213, 285, 428, 522, 767
SatI	GCNGC	3 cut(s)	542, 563, 730
Sau3AI	GATC	2 cut(s)	67, 574
Sau96I	GGNCC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	91, 820
SfcI	CTRYAG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	107, 624
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	8 cut(s)	130, 276, 425, 431, 463, 477, 709, 763
SseBI	AGGCCT	1 cut(s)	258
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	3 cut(s)	159, 742, 801
TaaI	ACNGT	1 cut(s)	911
TaiI	ACGT	1 cut(s)	697
TaqI	TCGA	3 cut(s)	549, 605, 707
TasI	AATT	8 cut(s)	130, 276, 425, 431, 463, 477, 709, 763
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	5 cut(s)	213, 285, 428, 522, 767
Tru9I	TTAA	5 cut(s)	213, 285, 428, 522, 767
TscAI	CASTG	2 cut(s)	576, 739
TseI	GCWGC	3 cut(s)	541, 562, 729
TspDTI	ATGAA	4 cut(s)	125, 231, 830, 876
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	576, 739
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	2 cut(s)	709, 763
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.