Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

61960745 .. 61962259

Gene Structure 1515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGGAAGAACAAAGAGAAGGGTTTCGTCCGGAGAAGAACAAGATTGACATAAAGAGTATGGACGATCAGCTACAGAAGCATCTTGATAGAGTATCCATCATAGAGATGAAGAAGAAGGAGCAAGACAATTACAGAGTTAGGGAAAGAGTTGGAGCCATGGAAATACAAGAGATACAAGAGTGGGAAATCAATCCCGAAAAACTGGTTATTAATGAACCCTTTGCTCGTGGCACCTTTGCTTCTGTTCACAGAGGCCTTTACAATGGCCAACCAATTGCAGTTAAAGTGTTGGATTGGGGAGAAGAGGGAGAAAGAACAAAAGCCTTGCAAAGAGATTTTCAGCGCGAAGTTTCTGCTTGGTATAAGCTTGAACATGTCAATATTACTAAGTGCATTGGAGCTACAACAGCGATAACTTCAAAATTAAAATTACAAAGTAATAACACGGAGCTAAGTAGTAATTCTGCTTGTGTAATTACCGAGTATCTTTCTGGAGGTACTCTCAAGTCTTACCTCATTAAGTACAGCGAAAGGAAGCTGCCTATCGAGGATGTCTATTTGCACTCGAAGAACATCGTTCACAGAGATGTGAAAACAGAAAATCTACTTCTTGATAAGAATCGGATGGTAAAGATAGCAGACTTTGGTGTTGCACGTCTTCAGGCTTCGAATTTGAGTGAGATGACAGGCAGCACTGGCACCCTTGGATACATGGCCCCTGAGGTATTGGAGTCTAAGCCGTATGACAAGAAATGCGATGTTTATAGCTTTGGAATTTGTTTATGGGAGATTTGTTGCTGCCAAATGCCGTACCCTAACTATTCATTTTCAGATTTAACTTCAGCTGTTGTATATAAAAATTTAAGACCACAAATACCTAAAAGTTGTCCAAGCTCCTTGGCCAAAGTAATGAAAAGATGTTGGGATGCAGAACCCAGCAAAAGGCCAGAAATGGATGAAGTTGTTACCATGTTAGAGGCTATTGACAAATCAAAACATCCCCACGGTTGCTTCTGTTTCTCCATGCCTAAGACTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

347

Amino Acids

39.83

Weight (kDa)

7.91

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	71 - 326	1.2e-50	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	77 - 323	1.4e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 701
AccII	CGCG	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	31
AcoI	YGGCCR	2 cut(s)	268, 903
AcsI	RAATTY	3 cut(s)	673, 777, 862
AcuI	CTGAAG	2 cut(s)	647, 828
AfaI	GTAC	3 cut(s)	502, 527, 815
AfiI	CCNNNNNNNGG	1 cut(s)	945
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	374, 423
AjiI	CACGTC	1 cut(s)	659
AluBI	AGCT	8 cut(s)	73, 370, 404, 454, 541, 771, 848, 897
AluI	AGCT	8 cut(s)	73, 370, 404, 454, 541, 771, 848, 897
Aor13HI	TCCGGA	1 cut(s)	31
AoxI	GGCC	5 cut(s)	256, 268, 717, 903, 947
ApeKI	GCWGC	3 cut(s)	541, 693, 801
ApoI	RAATTY	3 cut(s)	673, 777, 862
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	718
AsuII	TTCGAA	1 cut(s)	671
AxyI	CCTNAGG	1 cut(s)	723
BaeI	ACNNNNGTAYC	2 cut(s)	167, 200
BalI	TGGCCA	2 cut(s)	270, 905
BanI	GGYRCC	2 cut(s)	233, 701
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	653
BbvI	GCAGC	3 cut(s)	528, 705, 788
BccI	CCATC	2 cut(s)	107, 622
BceAI	ACGGC	2 cut(s)	727, 796
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciVI	GTATCC	2 cut(s)	106, 704
BfmI	CTRYAG	1 cut(s)	74
BfuI	GTATCC	2 cut(s)	106, 704
BisI	GCNGC	3 cut(s)	542, 694, 802
BlsI	GCNGC	3 cut(s)	543, 695, 803
BmgBI	CACGTC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	4 cut(s)	157, 235, 703, 720
BmsI	GCATC	2 cut(s)	91, 919
BpiI	GAAGAC	1 cut(s)	653
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	491
BsaBI	GATNNNNATC	1 cut(s)	621
BsaJI	CCNNGG	4 cut(s)	159, 706, 900, 1006
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	945
Bse1I	ACTGG	2 cut(s)	210, 703
Bse21I	CCTNAGG	1 cut(s)	723
Bse8I	GATNNNNATC	1 cut(s)	621
BseAI	TCCGGA	1 cut(s)	31
BseDI	CCNNGG	4 cut(s)	159, 706, 900, 1006
BseGI	GGATG	5 cut(s)	559, 633, 934, 964, 1000
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	945
BseMII	CTCAG	1 cut(s)	714
BseNI	ACTGG	2 cut(s)	210, 703
BseXI	GCAGC	3 cut(s)	528, 705, 788
BseYI	CCCAGC	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	5 cut(s)	258, 270, 719, 905, 949
BshNI	GGYRCC	2 cut(s)	233, 701
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	945
BsnI	GGCC	5 cut(s)	258, 270, 719, 905, 949
Bsp119I	TTCGAA	1 cut(s)	671
Bsp13I	TCCGGA	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	67
Bsp19I	CCATGG	1 cut(s)	159
BspANI	GGCC	5 cut(s)	258, 270, 719, 905, 949
BspCNI	CTCAG	1 cut(s)	715
BspEI	TCCGGA	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	157, 235, 703, 720
BspT104I	TTCGAA	1 cut(s)	671
BspT107I	GGYRCC	2 cut(s)	233, 701
BsrI	ACTGG	2 cut(s)	210, 703
BssECI	CCNNGG	4 cut(s)	159, 706, 900, 1006
BssMI	GATC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	159, 706, 900
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	1010
Bst6I	CTCTTC	1 cut(s)	300
BstBI	TTCGAA	1 cut(s)	671
BstDEI	CTNAG	5 cut(s)	390, 455, 723, 738, 1032
BstDSI	CCRYGG	2 cut(s)	159, 1006
BstF5I	GGATG	5 cut(s)	559, 633, 934, 964, 1000
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 410, 699
BstNSI	RCATGY	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	528, 705, 788
BstV2I	GAAGAC	1 cut(s)	653
Bsu36I	CCTNAGG	1 cut(s)	723
BsuI	GTATCC	2 cut(s)	106, 704
BsuRI	GGCC	5 cut(s)	258, 270, 719, 905, 949
BtgI	CCRYGG	2 cut(s)	159, 1006
BtgZI	GCGATG	1 cut(s)	774
BtrI	CACGTC	1 cut(s)	659
BtsCI	GGATG	5 cut(s)	559, 633, 934, 964, 1000
BtsIMutI	CAGTG	1 cut(s)	696
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	718
Csp6I	GTAC	3 cut(s)	501, 526, 814
CviAII	CATG	5 cut(s)	160, 377, 715, 973, 1027
CviQI	GTAC	3 cut(s)	501, 526, 814
DdeI	CTNAG	5 cut(s)	390, 455, 723, 738, 1032
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EaeI	YGGCCR	2 cut(s)	268, 903
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	3 cut(s)	159, 706, 900
Eco147I	AGGCCT	1 cut(s)	258
Eco57I	CTGAAG	2 cut(s)	647, 828
Eco81I	CCTNAGG	1 cut(s)	723
EcoT14I	CCWWGG	3 cut(s)	159, 706, 900
ErhI	CCWWGG	3 cut(s)	159, 706, 900
FaeI	CATG	5 cut(s)	163, 380, 718, 976, 1030
FatI	CATG	5 cut(s)	159, 376, 714, 972, 1026
Fnu4HI	GCNGC	3 cut(s)	542, 694, 802
FokI	GGATG	5 cut(s)	566, 640, 941, 971, 987
Fsp4HI	GCNGC	3 cut(s)	542, 694, 802
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	3 cut(s)	542, 694, 802
GsaI	CCCAGC	1 cut(s)	942
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	5 cut(s)	258, 270, 719, 905, 949
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	5 cut(s)	163, 380, 718, 976, 1030
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	622, 734
HpaII	CCGG	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	250, 583
Hpy188I	TCNGA	2 cut(s)	627, 835
Hpy188III	TCNNGA	5 cut(s)	32, 86, 197, 495, 614
Hpy8I	GTNNAC	2 cut(s)	250, 583
HpyAV	CCTTC	2 cut(s)	14, 112
HpyCH4III	ACNGT	1 cut(s)	1010
HpyCH4IV	ACGT	1 cut(s)	658
HpyCH4V	TGCA	6 cut(s)	281, 331, 396, 565, 656, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 410, 699
HpyF3I	CTNAG	5 cut(s)	390, 455, 723, 738, 1032
HpySE526I	ACGT	1 cut(s)	658
Hsp92II	CATG	5 cut(s)	163, 380, 718, 976, 1030
HspAI	GCGC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	5 cut(s)	121, 155, 401, 451, 902
LpnPI	CCDG	9 cut(s)	45, 191, 480, 650, 675, 684, 735, 952, 963
Lsp1109I	GCAGC	3 cut(s)	528, 705, 788
LweI	GCATC	2 cut(s)	91, 919
MaeII	ACGT	1 cut(s)	658
MaeIII	GTNAC	1 cut(s)	967
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	7 cut(s)	20, 49, 124, 127, 317, 583, 653
MfeI	CAATTG	1 cut(s)	276
MlsI	TGGCCA	2 cut(s)	270, 905
MluCI	AATT	9 cut(s)	130, 276, 425, 431, 463, 477, 673, 777, 862
MluNI	TGGCCA	2 cut(s)	270, 905
MlyI	GAGTC	1 cut(s)	743
MmeI	TCCRAC	2 cut(s)	133, 273
MnlI	CCTC	7 cut(s)	248, 301, 491, 527, 544, 718, 973
Mox20I	TGGCCA	2 cut(s)	270, 905
MroI	TCCGGA	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	24
MscI	TGGCCA	2 cut(s)	270, 905
MseI	TTAA	6 cut(s)	213, 285, 428, 522, 839, 866
MslI	CAYNNNNRTG	2 cut(s)	107, 588
Msp20I	TGGCCA	2 cut(s)	270, 905
MspA1I	CMGCKG	1 cut(s)	848
MspI	CCGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	79, 410, 699
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	5 cut(s)	163, 380, 718, 976, 1030
NlaIV	GGNNCC	4 cut(s)	157, 235, 703, 720
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	671
PceI	AGGCCT	1 cut(s)	258
PciI	ACATGT	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	543, 695, 803
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
PscI	ACATGT	1 cut(s)	376
PshBI	ATTAAT	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	938
PspN4I	GGNNCC	4 cut(s)	157, 235, 703, 720
PspPI	GGNCC	1 cut(s)	718
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	3 cut(s)	502, 527, 815
RsaNI	GTAC	3 cut(s)	501, 526, 814
RseI	CAYNNNNRTG	2 cut(s)	107, 588
SaqAI	TTAA	6 cut(s)	213, 285, 428, 522, 839, 866
SatI	GCNGC	3 cut(s)	542, 694, 802
Sau3AI	GATC	1 cut(s)	67
Sau96I	GGNCC	1 cut(s)	718
SchI	GAGTC	1 cut(s)	743
SfaNI	GCATC	2 cut(s)	91, 919
SfcI	CTRYAG	1 cut(s)	74
SfuI	TTCGAA	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	107, 588
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	9 cut(s)	130, 276, 425, 431, 463, 477, 673, 777, 862
SseBI	AGGCCT	1 cut(s)	258
SspI	AATATT	1 cut(s)	385
StuI	AGGCCT	1 cut(s)	258
StyI	CCWWGG	3 cut(s)	159, 706, 900
TaaI	ACNGT	1 cut(s)	1010
TaiI	ACGT	1 cut(s)	661
TaqI	TCGA	3 cut(s)	549, 569, 671
TasI	AATT	9 cut(s)	130, 276, 425, 431, 463, 477, 673, 777, 862
TatI	WGTACW	1 cut(s)	525
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	6 cut(s)	213, 285, 428, 522, 839, 866
Tru9I	TTAA	6 cut(s)	213, 285, 428, 522, 839, 866
TscAI	CASTG	1 cut(s)	703
TseI	GCWGC	3 cut(s)	541, 693, 801
TspDTI	ATGAA	5 cut(s)	125, 231, 816, 929, 975
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	703
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	3 cut(s)	673, 777, 862
XceI	RCATGY	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.