Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

20342505 .. 20345302

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGAAAGAAGGAAAGGATGGGTTTGTTCGAGCAGATCAGATTGATCTAAAAAGCTTAGACGAGCAACTAGAGAGACACTTAAGCAGAGCTTTGACTTTAGAGAAGAACAAGAAGAAAGATGAAGAAGACACAACCGCCGTCGCCATCGGTGGCTCTGCTTCTTCTTCCCCTGTCACTCTAAACGGCGGCGGATTTGTTGGCAAGAGGAAACAGAGACTTGAGTGGGAGATCGATCCTTCTAAACTTATCATCAAGACTGTTCTTGCTCGTGGCACTTTTGGTACCGTTCATCGTGGTATCTACGACGGTCAAGATGTTGCCGTGAAGTTGCTTGATTGGGGTGAAGAAGGTCATAGATCAGAAGCTGAGATTGTGTCTTTGAGAGCTGATTTTGCTCAGGAGGTTGCTGTTTGGCATAAATTGGATCATCCTAATGTCACCAAGTTTATAGGAGCAACAATGGGTGCATCAGGGTTACAGTTGCAAACAGAGAGTGGTCCATTAGCTATGCCAAACAATATATGTTGTGTTGTTGTTGAATATCTTCCAGGTGGTGCTTTAAAATCTTACCTGATCAAGAACAGAAGAAGAAAACTAACATTTAAAATTGTTGTTCAGCTCGCTCTTGATCTCGCTAGAGGGTTGAGTTACCTTCATTCGCAGAAGATTGTTCACCGAGATGTAAAGACAGAGAATATGTTGTTAGACAAAACCCGGACTGTTAAAATCGCAGATTTTGGAGTTGCGAGAGTTGAAGCATCTAACCCTAATGACATGACAGGAGAGACTGGCACACTTGGCTACATGGCGCCTGAGGTTCTCAATGGAAACCCGTATAATCGAAAATGCGATGTATACAGTTTCGGGATCTGCTTATGGGAGATATATTGCTGTGACATGCCATACCCTGACCTTACTTTCTCTGAGGTCACTTCAGCCGTCGTCCGCCAGAACCTGAGACCCGATATACCGAGGTGTTGCCCGAGCGCACTTGCAGCTGTGATGAAGCGATGTTGGGATGCAAATCCGGACAAGAGACCGGAGATGGATGAGGTTGTACCAATGTTGGAGAGTATTGACACAACCAAGGGAGGAGGGATGATTCCTAACGACCAGCAACAGGGTTGCCTATGCTTCCGAAGGAAACGTGGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

385

Amino Acids

42.73

Weight (kDa)

7.94

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	84 - 355	1.4e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	86 - 353	7.8e-49	Protein kinase domain
Kinase-like	PF14531	194 - 303	3.4e-06	Kinase-like
Pkinase_fungal	PF17667	213 - 288	6e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	2 cut(s)	281, 808
AccI	GTMKAC	1 cut(s)	855
AccIII	TCCGGA	1 cut(s)	1027
AciI	CCGC	4 cut(s)	135, 186, 189, 946
AclWI	GGATC	3 cut(s)	227, 432, 875
AcuI	CTGAAG	1 cut(s)	918
AcyI	GRCGYC	1 cut(s)	809
AfaI	GTAC	2 cut(s)	283, 1059
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	539, 755
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	7 cut(s)	54, 89, 365, 386, 506, 619, 998
AluI	AGCT	7 cut(s)	54, 89, 365, 386, 506, 619, 998
Alw26I	GTCTC	5 cut(s)	67, 208, 779, 952, 1030
AlwI	GGATC	3 cut(s)	227, 432, 875
AlwNI	CAGNNNCTG	2 cut(s)	365, 955
Ama87I	CYCGRG	1 cut(s)	982
Aor13HI	TCCGGA	1 cut(s)	1027
ApeKI	GCWGC	1 cut(s)	995
Asp700I	GAANNNNTTC	1 cut(s)	543
Asp718I	GGTACC	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	811, 989
AspS9I	GGNCC	2 cut(s)	497, 1151
AsuC2I	CCSGG	1 cut(s)	715
AsuHPI	GGTGA	3 cut(s)	353, 430, 665
AvaI	CYCGRG	1 cut(s)	982
AvaII	GGWCC	2 cut(s)	497, 1151
AxyI	CCTNAGG	1 cut(s)	813
BanI	GGYRCC	2 cut(s)	281, 808
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	1007
BccI	CCATC	3 cut(s)	11, 152, 1039
BceAI	ACGGC	4 cut(s)	122, 199, 305, 923
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	715
BcoDI	GTCTC	5 cut(s)	67, 208, 779, 952, 1030
BfaI	CTAG	2 cut(s)	68, 636
BfoI	RGCGCY	1 cut(s)	812
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	2 cut(s)	187, 996
BlsI	GCNGC	2 cut(s)	188, 997
Bme1390I	CCNGG	2 cut(s)	549, 715
Bme18I	GGWCC	2 cut(s)	497, 1151
BmeT110I	CYCGRG	1 cut(s)	982
BmgT120I	GGNCC	2 cut(s)	497, 1151
BmiI	GGNNCC	2 cut(s)	283, 810
BmrFI	CCNGG	2 cut(s)	549, 715
BmsI	GCATC	3 cut(s)	476, 767, 1009
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	715
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	1023
BsaHI	GRCGYC	1 cut(s)	809
BsaI	GGTCTC	2 cut(s)	952, 1030
BsaJI	CCNNGG	2 cut(s)	971, 1086
BsaWI	WCCGGW	2 cut(s)	1027, 1039
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse1I	ACTGG	1 cut(s)	793
Bse21I	CCTNAGG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	1023
BseAI	TCCGGA	1 cut(s)	1027
BseBI	CCWGG	1 cut(s)	549
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	971, 1086
BseGI	GGATG	5 cut(s)	22, 427, 1024, 1054, 1104
BseJI	GATNNNNATC	1 cut(s)	1023
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseMII	CTCAG	5 cut(s)	357, 410, 804, 915, 947
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	1 cut(s)	1107
BseXI	GCAGC	1 cut(s)	1007
BshNI	GGYRCC	2 cut(s)	281, 808
BshVI	ATCGAT	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	982
BsiSI	CCGG	3 cut(s)	715, 1028, 1040
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	5 cut(s)	67, 208, 779, 952, 1030
Bso31I	GGTCTC	2 cut(s)	952, 1030
BsoBI	CYCGRG	1 cut(s)	982
Bsp13I	TCCGGA	1 cut(s)	1027
Bsp143I	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
BspACI	CCGC	4 cut(s)	135, 186, 189, 946
BspCNI	CTCAG	5 cut(s)	358, 409, 805, 916, 948
BspDI	ATCGAT	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	1027
BspLI	GGNNCC	2 cut(s)	283, 810
BspPI	GGATC	3 cut(s)	227, 432, 875
BspT107I	GGYRCC	2 cut(s)	281, 808
BspTI	CTTAAG	1 cut(s)	79
BspTNI	GGTCTC	2 cut(s)	952, 1030
BsrI	ACTGG	1 cut(s)	793
BssECI	CCNNGG	2 cut(s)	971, 1086
BssMI	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
BssNAI	GTATAC	1 cut(s)	856
BssNI	GRCGYC	1 cut(s)	809
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	1086
Bst1107I	GTATAC	1 cut(s)	856
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	6 cut(s)	259, 286, 308, 480, 721, 860
BstACI	GRCGYC	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	621
BstDEI	CTNAG	6 cut(s)	55, 366, 396, 813, 924, 956
BstF5I	GGATG	5 cut(s)	22, 427, 1024, 1054, 1104
BstH2I	RGCGCY	1 cut(s)	812
BstHHI	GCGC	2 cut(s)	811, 989
BstKTI	GATC	9 cut(s)	37, 46, 231, 235, 359, 427, 576, 631, 870
BstMAI	GTCTC	5 cut(s)	67, 208, 779, 952, 1030
BstMBI	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 798, 995
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	2 cut(s)	547, 713
BstV1I	GCAGC	1 cut(s)	1007
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
BstZ17I	GTATAC	1 cut(s)	856
Bsu15I	ATCGAT	1 cut(s)	231
Bsu36I	CCTNAGG	1 cut(s)	813
BsuTUI	ATCGAT	1 cut(s)	231
BtgZI	GCGATG	2 cut(s)	864, 1024
BtsCI	GGATG	5 cut(s)	22, 427, 1024, 1054, 1104
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	2 cut(s)	365, 955
CfoI	GCGC	2 cut(s)	811, 989
Cfr13I	GGNCC	2 cut(s)	497, 1151
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	282, 1058
CviAII	CATG	3 cut(s)	775, 805, 898
CviQI	GTAC	2 cut(s)	282, 1058
DdeI	CTNAG	6 cut(s)	55, 366, 396, 813, 924, 956
DinI	GGCGCC	1 cut(s)	810
DpnI	GATC	9 cut(s)	36, 45, 230, 234, 358, 426, 575, 630, 869
DpnII	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
DraI	TTTAAA	2 cut(s)	561, 604
EciI	GGCGGA	2 cut(s)	204, 935
Eco130I	CCWWGG	1 cut(s)	1086
Eco31I	GGTCTC	2 cut(s)	952, 1030
Eco47I	GGWCC	2 cut(s)	497, 1151
Eco57I	CTGAAG	1 cut(s)	918
Eco81I	CCTNAGG	1 cut(s)	813
Eco88I	CYCGRG	1 cut(s)	982
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	1086
EgeI	GGCGCC	1 cut(s)	810
EheI	GGCGCC	1 cut(s)	810
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	3 cut(s)	778, 808, 901
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	3 cut(s)	774, 804, 897
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	187, 996
FokI	GGATG	5 cut(s)	29, 414, 1031, 1061, 1111
Fsp4HI	GCNGC	2 cut(s)	187, 996
FspBI	CTAG	2 cut(s)	68, 636
GlaI	GCGC	2 cut(s)	810, 988
GluI	GCNGC	2 cut(s)	187, 996
HaeII	RGCGCY	1 cut(s)	812
HapII	CCGG	3 cut(s)	715, 1028, 1040
HhaI	GCGC	2 cut(s)	811, 989
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	3 cut(s)	778, 808, 901
Hin6I	GCGC	2 cut(s)	809, 987
HinP1I	GCGC	2 cut(s)	809, 987
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	1 cut(s)	1102
HpaII	CCGG	3 cut(s)	715, 1028, 1040
HphI	GGTGA	3 cut(s)	353, 430, 665
Hpy166II	GTNNAC	2 cut(s)	673, 856
Hpy188I	TCNGA	4 cut(s)	39, 361, 925, 1139
Hpy188III	TCNNGA	7 cut(s)	253, 311, 398, 577, 626, 865, 1028
Hpy8I	GTNNAC	2 cut(s)	673, 856
Hpy99I	CGWCG	3 cut(s)	143, 308, 944
HpyAV	CCTTC	4 cut(s)	246, 341, 662, 1134
HpyCH4III	ACNGT	6 cut(s)	259, 286, 308, 480, 721, 860
HpyCH4IV	ACGT	1 cut(s)	1147
HpyCH4V	TGCA	4 cut(s)	467, 484, 995, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 798, 995
HpyF3I	CTNAG	6 cut(s)	55, 366, 396, 813, 924, 956
HpySE526I	ACGT	1 cut(s)	1147
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	3 cut(s)	778, 808, 901
HspAI	GCGC	2 cut(s)	809, 987
KasI	GGCGCC	1 cut(s)	808
Kpn2I	TCCGGA	1 cut(s)	1027
KpnI	GGTACC	1 cut(s)	285
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
LmnI	GCTCC	1 cut(s)	452
Lsp1109I	GCAGC	1 cut(s)	1007
LweI	GCATC	3 cut(s)	476, 767, 1009
MaeI	CTAG	2 cut(s)	68, 636
MaeII	ACGT	1 cut(s)	1147
MaeIII	GTNAC	6 cut(s)	172, 436, 474, 647, 893, 928
MalI	GATC	9 cut(s)	36, 45, 230, 234, 358, 426, 575, 630, 869
MboI	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
MflI	RGATCY	1 cut(s)	867
MluCI	AATT	2 cut(s)	419, 606
Mly113I	GGCGCC	1 cut(s)	809
MmeI	TCCRAC	1 cut(s)	1047
MnlI	CCTC	9 cut(s)	198, 394, 632, 808, 919, 966, 1045, 1085, 1088
MroI	TCCGGA	1 cut(s)	1027
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	5 cut(s)	80, 560, 603, 723, 1156
MslI	CAYNNNNRTG	2 cut(s)	432, 678
MspA1I	CMGCKG	1 cut(s)	998
MspCI	CTTAAG	1 cut(s)	79
MspI	CCGG	3 cut(s)	715, 1028, 1040
MspR9I	CCNGG	2 cut(s)	549, 715
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	3 cut(s)	392, 798, 995
NarI	GGCGCC	1 cut(s)	809
NciI	CCSGG	1 cut(s)	715
NdeII	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
NlaIII	CATG	3 cut(s)	778, 808, 901
NlaIV	GGNNCC	2 cut(s)	283, 810
NmuCI	GTSAC	4 cut(s)	172, 436, 893, 928
NspI	RCATGY	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	1102
PkrI	GCNGC	2 cut(s)	188, 997
PluTI	GGCGCC	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	283, 810
PspPI	GGNCC	2 cut(s)	497, 1151
PstNI	CAGNNNCTG	2 cut(s)	365, 955
PsuI	RGATCY	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	2 cut(s)	283, 1059
RsaNI	GTAC	2 cut(s)	282, 1058
RseI	CAYNNNNRTG	2 cut(s)	432, 678
SaqAI	TTAA	5 cut(s)	80, 560, 603, 723, 1156
SatI	GCNGC	2 cut(s)	187, 996
Sau3AI	GATC	9 cut(s)	34, 43, 228, 232, 356, 424, 573, 628, 867
Sau96I	GGNCC	2 cut(s)	497, 1151
ScrFI	CCNGG	2 cut(s)	549, 715
SfaNI	GCATC	3 cut(s)	476, 767, 1009
SfoI	GGCGCC	1 cut(s)	810
SinI	GGWCC	2 cut(s)	497, 1151
SmiMI	CAYNNNNRTG	2 cut(s)	432, 678
SmlI	CTYRAG	2 cut(s)	79, 218
SmoI	CTYRAG	2 cut(s)	79, 218
Sse9I	AATT	2 cut(s)	419, 606
SsiI	CCGC	4 cut(s)	135, 186, 189, 946
SspDI	GGCGCC	1 cut(s)	808
SspMI	CTAG	2 cut(s)	68, 636
StyD4I	CCNGG	2 cut(s)	547, 713
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	6 cut(s)	259, 286, 308, 480, 721, 860
TaiI	ACGT	1 cut(s)	1150
TaqI	TCGA	3 cut(s)	28, 231, 841
TasI	AATT	2 cut(s)	419, 606
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	1102
Tru1I	TTAA	5 cut(s)	80, 560, 603, 723, 1156
Tru9I	TTAA	5 cut(s)	80, 560, 603, 723, 1156
TseFI	GTSAC	4 cut(s)	172, 436, 893, 928
TseI	GCWGC	1 cut(s)	995
Tsp45I	GTSAC	4 cut(s)	172, 436, 893, 928
TspDTI	ATGAA	5 cut(s)	17, 135, 278, 644, 1019
Vha464I	CTTAAG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	497, 1151
XceI	RCATGY	1 cut(s)	901
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	2 cut(s)	68, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.