Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

55975258 .. 55979407

Gene Structure 4150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGAAGGAGGGCAGTGATGGGTTTGTTAGGGCCGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTGGAGAGACATCTCAACAGGGTTTTGACTTTGGAGAAGACCAAGATGAGAGGAGACCAAGACACCAATTCCACCACCACCACCACCACCACCACCAACAACAACAACCTCAACAGTCTCAACCTCAGCACCACCTCCGCCGCCGCCACCTCCACCTCCACTTCCGGCATGACTCTCTCCATCCCCAAGCGCCACAGGCAGGAGTGGGAGATCGACCCTTCCAAGCTCATCATCAAGACCGTCATTGCACGTGGCACGTTCGGCACCGTCCACCGTGGCATCTACGACGGCCAAGATGTCGCCGTGAAATTACTCGACTGGGGTGAAGAGGGTCACAGGACGGACGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGAACATCCTAATGTTACTAAGTTTATAGGGGCGACAATGGGTTCTTCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTCGTTGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGACTTTTAAGGTCGTGGTCCAGTTGGCACTAGATCTTGCTAGAGGGTTAAGTTACCTGCACTCACAAAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGCTGCTTGACAAGACACGTACTGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGCACCAGACTCATATTATGTGAAAATGGCATTTATTGCCCTTTTAAACACTGGTTTACTTGATGTGAAGAGGATGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTACAGTTTTGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCAGACATACCAAGATGTTGTCCAAGTGCTCTAGCAAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAACGGCCAGAGATGGATGAGGTAGTCTCAATGATCGAGGCCATTGACACAACTAAAGGTGGAGGTATGATCCCTCAAGATCAGTCTCAGGGTTGTCTCTGCTTCCGCAAGTATAGAGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

426

Amino Acids

47.43

Weight (kDa)

7.52

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	100 - 290	1.2e-33	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	102 - 289	2.2e-33	Protein kinase domain
Pkinase	PF00069	314 - 395	5.1e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	315 - 396	6.1e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	708
AccB1I	GGYRCC	2 cut(s)	329, 865
AciI	CCGC	4 cut(s)	204, 207, 210, 1261
AclWI	GGATC	1 cut(s)	1219
AcoI	YGGCCR	2 cut(s)	355, 1160
AcsI	RAATTY	2 cut(s)	528, 1075
AcuI	CTGAAG	2 cut(s)	501, 1041
AcvI	CACGTG	1 cut(s)	317
AfaI	GTAC	2 cut(s)	766, 980
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	2 cut(s)	803, 810
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	7 cut(s)	54, 67, 292, 437, 806, 1041, 1061
AluI	AGCT	7 cut(s)	54, 67, 292, 437, 806, 1041, 1061
Alw21I	GWGCWC	2 cut(s)	607, 1114
Alw26I	GTCTC	8 cut(s)	67, 114, 188, 827, 1075, 1186, 1245, 1256
AlwI	GGATC	1 cut(s)	1219
AoxI	GGCC	4 cut(s)	30, 355, 1160, 1194
ApeKI	GCWGC	3 cut(s)	64, 434, 748
ApoI	RAATTY	2 cut(s)	528, 1075
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	30, 661, 1274
AsuHPI	GGTGA	2 cut(s)	401, 713
AvaII	GGWCC	2 cut(s)	661, 1274
AxyI	CCTNAGG	1 cut(s)	861
BanI	GGYRCC	2 cut(s)	329, 865
BauI	CACGAG	1 cut(s)	795
BbrPI	CACGTG	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	607, 1114
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	76, 446, 735
BccI	CCATC	4 cut(s)	11, 254, 931, 1162
BceAI	ACGGC	3 cut(s)	353, 370, 1175
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	8 cut(s)	67, 114, 188, 827, 1075, 1186, 1245, 1256
BfaI	CTAG	4 cut(s)	470, 674, 684, 1115
BfoI	RGCGCY	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	708
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	5 cut(s)	65, 207, 210, 435, 749
BlsI	GCNGC	5 cut(s)	66, 208, 211, 436, 750
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	2 cut(s)	661, 1274
BmgT120I	GGNCC	3 cut(s)	30, 661, 1274
BmiI	GGNNCC	3 cut(s)	331, 858, 867
BmrFI	CCNGG	1 cut(s)	597
BmrI	ACTGGG	2 cut(s)	394, 837
BmsI	GCATC	3 cut(s)	354, 999, 1132
BmuI	ACTGGG	2 cut(s)	394, 837
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	1166, 1198
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	191, 1037
BpuEI	CTTGAG	2 cut(s)	32, 1215
BsaAI	YACGTR	2 cut(s)	317, 764
BsaI	GGTCTC	2 cut(s)	114, 1075
BsaJI	CCNNGG	2 cut(s)	340, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	5 cut(s)	389, 664, 832, 841, 919
Bse21I	CCTNAGG	1 cut(s)	861
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	340, 596
BseGI	GGATG	6 cut(s)	64, 246, 475, 942, 1147, 1177
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	205, 852, 1256
BseNI	ACTGG	5 cut(s)	389, 664, 832, 841, 919
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	76, 446, 735
BsgI	GTGCAG	1 cut(s)	686
BshFI	GGCC	4 cut(s)	32, 357, 1162, 1196
BshNI	GGYRCC	2 cut(s)	329, 865
BsiHKAI	GWGCWC	2 cut(s)	607, 1114
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	8 cut(s)	67, 114, 188, 827, 1075, 1186, 1245, 1256
BsnI	GGCC	4 cut(s)	32, 357, 1162, 1196
Bso31I	GGTCTC	2 cut(s)	114, 1075
Bsp1286I	GDGCHC	2 cut(s)	607, 1114
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
BspACI	CCGC	4 cut(s)	204, 207, 210, 1261
BspANI	GGCC	4 cut(s)	32, 357, 1162, 1196
BspCNI	CTCAG	3 cut(s)	204, 853, 1255
BspLI	GGNNCC	3 cut(s)	331, 858, 867
BspMI	ACCTGC	1 cut(s)	708
BspPI	GGATC	1 cut(s)	1219
BspT107I	GGYRCC	2 cut(s)	329, 865
BspTNI	GGTCTC	2 cut(s)	114, 1075
BsrDI	GCAATG	1 cut(s)	309
BsrGI	TGTACA	1 cut(s)	978
BsrI	ACTGG	5 cut(s)	389, 664, 832, 841, 919
BssECI	CCNNGG	2 cut(s)	340, 596
BssMI	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
BssSI	CACGAG	1 cut(s)	795
Bst2BI	CACGAG	1 cut(s)	795
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	7 cut(s)	182, 307, 334, 341, 769, 983, 1278
Bst6I	CTCTTC	2 cut(s)	387, 926
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstAUI	TGTACA	1 cut(s)	978
BstBAI	YACGTR	2 cut(s)	317, 764
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	6 cut(s)	191, 428, 489, 861, 1037, 1242
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	6 cut(s)	64, 246, 475, 942, 1147, 1177
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	7 cut(s)	37, 46, 279, 679, 1191, 1227, 1237
BstMAI	GTCTC	8 cut(s)	67, 114, 188, 827, 1075, 1186, 1245, 1256
BstMBI	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
BstMWI	GCNNNNNNNGC	5 cut(s)	262, 327, 419, 863, 899
BstNI	CCWGG	1 cut(s)	597
BstNSI	RCATGY	3 cut(s)	559, 748, 1024
BstSCI	CCNGG	1 cut(s)	595
BstV1I	GCAGC	3 cut(s)	76, 446, 735
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
Bsu36I	CCTNAGG	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	32, 357, 1162, 1196
BtgI	CCRYGG	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	1147
BtsCI	GGATG	6 cut(s)	64, 246, 475, 942, 1147, 1177
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 912
BveI	ACCTGC	1 cut(s)	708
Cac8I	GCNNGC	1 cut(s)	557
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	3 cut(s)	30, 661, 1274
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	765, 979
CviAII	CATG	6 cut(s)	235, 556, 745, 823, 853, 1021
CviQI	GTAC	2 cut(s)	765, 979
DdeI	CTNAG	6 cut(s)	191, 428, 489, 861, 1037, 1242
DpnI	GATC	7 cut(s)	36, 45, 278, 678, 1190, 1226, 1236
DpnII	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
DraI	TTTAAA	1 cut(s)	909
EaeI	YGGCCR	2 cut(s)	355, 1160
Eam1104I	CTCTTC	2 cut(s)	387, 926
EarI	CTCTTC	2 cut(s)	387, 926
EciI	GGCGGA	1 cut(s)	193
Eco31I	GGTCTC	2 cut(s)	114, 1075
Eco47I	GGWCC	2 cut(s)	661, 1274
Eco57I	CTGAAG	2 cut(s)	501, 1041
Eco72I	CACGTG	1 cut(s)	317
Eco81I	CCTNAGG	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	595
FaeI	CATG	6 cut(s)	238, 559, 748, 826, 856, 1024
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FatI	CATG	6 cut(s)	234, 555, 744, 822, 852, 1020
Fnu4HI	GCNGC	5 cut(s)	65, 207, 210, 435, 749
FokI	GGATG	6 cut(s)	71, 233, 462, 949, 1154, 1184
Fsp4HI	GCNGC	5 cut(s)	65, 207, 210, 435, 749
FspBI	CTAG	4 cut(s)	470, 674, 684, 1115
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	65, 207, 210, 435, 749
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	4 cut(s)	32, 357, 1162, 1196
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	6 cut(s)	238, 559, 748, 826, 856, 1024
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	2 cut(s)	238, 872
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	401, 713
Hpy166II	GTNNAC	5 cut(s)	337, 645, 721, 920, 979
Hpy188I	TCNGA	5 cut(s)	39, 520, 534, 966, 1048
Hpy188III	TCNNGA	6 cut(s)	49, 301, 772, 860, 1031, 1232
Hpy8I	GTNNAC	5 cut(s)	337, 645, 721, 920, 979
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	294, 630
HpyCH4III	ACNGT	7 cut(s)	182, 307, 334, 341, 769, 983, 1278
HpyCH4IV	ACGT	3 cut(s)	316, 323, 763
HpyCH4V	TGCA	2 cut(s)	314, 703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	262, 327, 419, 863, 899
HpyF3I	CTNAG	6 cut(s)	191, 428, 489, 861, 1037, 1242
HpySE526I	ACGT	3 cut(s)	316, 323, 763
Hsp92II	CATG	6 cut(s)	238, 559, 748, 826, 856, 1024
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	3 cut(s)	76, 446, 735
LweI	GCATC	3 cut(s)	354, 999, 1132
MaeI	CTAG	4 cut(s)	470, 674, 684, 1115
MaeII	ACGT	3 cut(s)	316, 323, 763
MaeIII	GTNAC	6 cut(s)	398, 484, 695, 848, 1016, 1051
MalI	GATC	7 cut(s)	36, 45, 278, 678, 1190, 1226, 1236
MboI	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
MboII	GAAGA	5 cut(s)	115, 404, 507, 584, 943
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	2 cut(s)	607, 1114
MluCI	AATT	6 cut(s)	133, 374, 417, 528, 549, 1075
MlyI	GAGTC	2 cut(s)	232, 866
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	3 cut(s)	651, 692, 908
MslI	CAYNNNNRTG	2 cut(s)	480, 726
MspA1I	CMGCKG	2 cut(s)	67, 1061
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	5 cut(s)	262, 327, 419, 863, 899
NdeII	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
NlaIII	CATG	6 cut(s)	238, 559, 748, 826, 856, 1024
NlaIV	GGNNCC	3 cut(s)	331, 858, 867
NmuCI	GTSAC	3 cut(s)	398, 1016, 1051
NspI	RCATGY	3 cut(s)	559, 748, 1024
PaeI	GCATGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	591
PkrI	GCNGC	5 cut(s)	66, 208, 211, 436, 750
PleI	GAGTC	2 cut(s)	232, 866
PmaCI	CACGTG	1 cut(s)	317
PmlI	CACGTG	1 cut(s)	317
PpsI	GAGTC	2 cut(s)	232, 866
Ppu21I	YACGTR	2 cut(s)	317, 764
PsiI	TTATAA	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	595
PspCI	CACGTG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	3 cut(s)	331, 858, 867
PspPI	GGNCC	3 cut(s)	30, 661, 1274
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	2 cut(s)	67, 1061
RsaI	GTAC	2 cut(s)	766, 980
RsaNI	GTAC	2 cut(s)	765, 979
RseI	CAYNNNNRTG	2 cut(s)	480, 726
SaqAI	TTAA	3 cut(s)	651, 692, 908
SatI	GCNGC	5 cut(s)	65, 207, 210, 435, 749
Sau3AI	GATC	7 cut(s)	34, 43, 276, 676, 1188, 1224, 1234
Sau96I	GGNCC	3 cut(s)	30, 661, 1274
SchI	GAGTC	2 cut(s)	232, 866
ScrFI	CCNGG	1 cut(s)	597
SduI	GDGCHC	2 cut(s)	607, 1114
SfaNI	GCATC	3 cut(s)	354, 999, 1132
SinI	GGWCC	2 cut(s)	661, 1274
SmiMI	CAYNNNNRTG	2 cut(s)	480, 726
SmlI	CTYRAG	2 cut(s)	47, 1230
SmoI	CTYRAG	2 cut(s)	47, 1230
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	6 cut(s)	133, 374, 417, 528, 549, 1075
SsiI	CCGC	4 cut(s)	204, 207, 210, 1261
SspMI	CTAG	4 cut(s)	470, 674, 684, 1115
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	7 cut(s)	182, 307, 334, 341, 769, 983, 1278
TaiI	ACGT	3 cut(s)	319, 326, 766
TaqI	TCGA	3 cut(s)	279, 381, 1191
TasI	AATT	6 cut(s)	133, 374, 417, 528, 549, 1075
TatI	WGTACW	1 cut(s)	978
TauI	GCSGC	2 cut(s)	209, 212
Tru1I	TTAA	3 cut(s)	651, 692, 908
Tru9I	TTAA	3 cut(s)	651, 692, 908
TscAI	CASTG	2 cut(s)	19, 919
TseFI	GTSAC	3 cut(s)	398, 1016, 1051
TseI	GCWGC	3 cut(s)	64, 434, 748
Tsp45I	GTSAC	3 cut(s)	398, 1016, 1051
TspDTI	ATGAA	2 cut(s)	17, 1142
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	2 cut(s)	19, 919
VpaK11BI	GGWCC	2 cut(s)	661, 1274
XapI	RAATTY	2 cut(s)	528, 1075
XceI	RCATGY	3 cut(s)	559, 748, 1024
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	4 cut(s)	470, 674, 684, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.