Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

26508132 .. 26510132

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G254400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCATTGGCACCCAAGATTGACGTGAAAAGTTTGGACGAAAAGTTAGAGAATCTCTACCGACTGTACTCTATCAAGAAGAAGAAAGAGTTGCATGACGAAGAAAGCAACCAAGTCATCAACATGAGAGCCATGGCGGCCAAAGAAGCTCCTCAAGAAGAATGGCAAATGATCATTCGAGAGAAACTTGTCGTGAAACAAGTTTTTGCCCGTGGAGGCTTCGGGTCTGTGCATAAAGGCATCTATGATGGACAAGAAGTTGCAGTCAAAGTGATGGAGTGGGGAGAAGACGGCCGAACAAAATCTGAAATAGCTTCTTTGAAGAAAGATTTTAGGCAGGAGGTTTCTATTTGGCATAAGCTTGATCATCCTAACATTACTAAGTATATTGGAGCCACAACGGATATCGACTCTGCCTCTGTTATTACTGAGTATCTTCCTGGAGGAACCCTAAAAGCCTTCCTCATCCAACACCGGAAAAAAAAGTTGCCTCTCAAGACAGTTAACCGACTGGCCGTTGATCTTGCTAAAGGATTGAGTTTTTTGCACTCCAAGAACATTGTTCATAGAGACGTGAAAACGGAAAATGTGCTTCTTGATAAGGATGGTAGGGTGAAGATAGCAGACTTTGGAGTTGCTCGTCTGGAGGCTTCAAATTTAGCAGAGATGACAGGCTACACGGGAACCCCCGGATACATGGCCCCTGAGGTCCTGGAATGTAAACCCTACAACAGGAAATGCGACGTTTATAGCTTCGGGATTTGCTTGTGGGAGATGTATTGCTGCGATATGCCCTACCCTAACATCACGTTCTCCGAATTGACTTCGGCTGTTGTTTATAAAAATTTGAGGCCAGAGATACCCAAGCAATGCCCAAGCTCTCTAGCCAAAGTGATGAAACAGTGCTGGGATGGAGAACCCAAGAGAAGGCCAGAAATGGAGGAGGTTGTTTCCATGCTAGAGGCAATTAACACGTCAAACAGTGCTCCTTCGGGTTGCTTCAGCTTCTTCGGCTCAAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

342

Amino Acids

38.65

Weight (kDa)

8.72

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	137
AcoI	YGGCCR	3 cut(s)	138, 292, 513
AcsI	RAATTY	2 cut(s)	655, 844
AcuI	CTGAAG	1 cut(s)	985
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	732, 927
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	2 cut(s)	322, 654
AjiI	CACGTC	3 cut(s)	25, 574, 975
AjnI	CCWGG	2 cut(s)	439, 711
AluBI	AGCT	6 cut(s)	149, 314, 361, 753, 879, 1005
AluI	AGCT	6 cut(s)	149, 314, 361, 753, 879, 1005
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	1 cut(s)	564
AoxI	GGCC	6 cut(s)	138, 292, 513, 699, 851, 929
ApeKI	GCWGC	1 cut(s)	783
ApoI	RAATTY	2 cut(s)	655, 844
AspS9I	GGNCC	2 cut(s)	700, 709
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	709
AxyI	CCTNAGG	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	1 cut(s)	770
BccI	CCATC	4 cut(s)	242, 268, 599, 905
BceAI	ACGGC	2 cut(s)	307, 500
BciT130I	CCWGG	2 cut(s)	441, 713
BciVI	GTATCC	1 cut(s)	686
BclI	TGATCA	2 cut(s)	171, 364
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	2 cut(s)	884, 959
BfuI	GTATCC	1 cut(s)	686
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	2 cut(s)	138, 784
BlsI	GCNGC	2 cut(s)	139, 785
Bme1390I	CCNGG	3 cut(s)	441, 690, 713
Bme18I	GGWCC	1 cut(s)	709
BmgBI	CACGTC	3 cut(s)	25, 574, 975
BmgT120I	GGNCC	2 cut(s)	700, 709
BmiI	GGNNCC	5 cut(s)	12, 394, 448, 685, 702
BmrFI	CCNGG	3 cut(s)	441, 690, 713
BmsI	GCATC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	2 cut(s)	462, 665
BpuEI	CTTGAG	3 cut(s)	138, 479, 1000
BpuMI	CCSGG	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	132, 211, 688
BsaWI	WCCGGW	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	732, 927
Bse1I	ACTGG	1 cut(s)	516
Bse21I	CCTNAGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	875
BseBI	CCWGG	2 cut(s)	441, 713
BseDI	CCNNGG	3 cut(s)	132, 211, 688
BseGI	GGATG	4 cut(s)	367, 465, 610, 916
BseLI	CCNNNNNNNGG	2 cut(s)	732, 927
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	2 cut(s)	420, 696
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	2 cut(s)	141, 956
BseX3I	CGGCCG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	770
BseYI	CCCAGC	1 cut(s)	906
Bsh1285I	CGRYCG	1 cut(s)	295
BshFI	GGCC	6 cut(s)	140, 294, 515, 701, 853, 931
BshNI	GGYRCC	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	988
BsiSI	CCGG	2 cut(s)	475, 690
BslI	CCNNNNNNNGG	2 cut(s)	732, 927
BsmAI	GTCTC	1 cut(s)	564
BsmBI	CGTCTC	1 cut(s)	564
BsnI	GGCC	6 cut(s)	140, 294, 515, 701, 853, 931
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	3 cut(s)	171, 364, 520
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	6 cut(s)	140, 294, 515, 701, 853, 931
BspCNI	CTCAG	2 cut(s)	421, 697
BspLI	GGNNCC	5 cut(s)	12, 394, 448, 685, 702
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	875
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	132, 211, 688
BssMI	GATC	3 cut(s)	171, 364, 520
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	441, 713
Bst4CI	ACNGT	4 cut(s)	66, 502, 903, 983
BstDEI	CTNAG	3 cut(s)	381, 429, 705
BstDSI	CCRYGG	2 cut(s)	132, 211
BstENI	CCTNNNNNAGG	1 cut(s)	730
BstF5I	GGATG	4 cut(s)	367, 465, 610, 916
BstKTI	GATC	3 cut(s)	174, 367, 523
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	3 cut(s)	171, 364, 520
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 1011, 1020
BstNI	CCWGG	2 cut(s)	441, 713
BstSCI	CCNGG	3 cut(s)	439, 688, 711
BstV1I	GCAGC	1 cut(s)	770
BstV2I	GAAGAC	1 cut(s)	294
BstZI	CGGCCG	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	6 cut(s)	140, 294, 515, 701, 853, 931
BtgI	CCRYGG	2 cut(s)	132, 211
BtrI	CACGTC	3 cut(s)	25, 574, 975
BtsCI	GGATG	4 cut(s)	367, 465, 610, 916
BtsIMutI	CAGTG	2 cut(s)	908, 988
Cfr13I	GGNCC	2 cut(s)	700, 709
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	5 cut(s)	95, 124, 133, 697, 955
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	381, 429, 705
DpnI	GATC	3 cut(s)	173, 366, 522
DpnII	GATC	3 cut(s)	171, 364, 520
EaeI	YGGCCR	3 cut(s)	138, 292, 513
EagI	CGGCCG	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	709
Eco52I	CGGCCG	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	985
Eco81I	CCTNAGG	1 cut(s)	705
EcoNI	CCTNNNNNAGG	1 cut(s)	730
EcoO109I	RGGNCCY	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	439, 711
EcoRV	GATATC	1 cut(s)	406
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	5 cut(s)	98, 127, 136, 700, 958
FatI	CATG	5 cut(s)	94, 123, 132, 696, 954
FbaI	TGATCA	2 cut(s)	171, 364
Fnu4HI	GCNGC	2 cut(s)	138, 784
FokI	GGATG	4 cut(s)	354, 452, 617, 923
Fsp4HI	GCNGC	2 cut(s)	138, 784
FspBI	CTAG	2 cut(s)	884, 959
GluI	GCNGC	2 cut(s)	138, 784
GsaI	CCCAGC	1 cut(s)	910
GsuI	CTGGAG	2 cut(s)	462, 665
HaeIII	GGCC	6 cut(s)	140, 294, 515, 701, 853, 931
HapII	CCGG	2 cut(s)	475, 690
Hin1II	CATG	5 cut(s)	98, 127, 136, 700, 958
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	52, 410
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	2 cut(s)	475, 690
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	505, 722
Hpy188I	TCNGA	2 cut(s)	307, 817
Hpy188III	TCNNGA	9 cut(s)	76, 155, 179, 193, 496, 596, 644, 757, 1017
Hpy8I	GTNNAC	2 cut(s)	505, 722
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	3 cut(s)	469, 921, 999
HpyCH4III	ACNGT	4 cut(s)	66, 502, 903, 983
HpyCH4IV	ACGT	5 cut(s)	24, 573, 744, 809, 974
HpyCH4V	TGCA	4 cut(s)	94, 232, 263, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 1011, 1020
HpyF3I	CTNAG	3 cut(s)	381, 429, 705
HpySE526I	ACGT	5 cut(s)	24, 573, 744, 809, 974
Hsp92II	CATG	5 cut(s)	98, 127, 136, 700, 958
Ksp22I	TGATCA	2 cut(s)	171, 364
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	171, 364, 520
LmnI	GCTCC	3 cut(s)	154, 392, 991
Lsp1109I	GCAGC	1 cut(s)	770
LweI	GCATC	1 cut(s)	249
MaeI	CTAG	2 cut(s)	884, 959
MaeII	ACGT	5 cut(s)	24, 573, 744, 809, 974
MalI	GATC	3 cut(s)	173, 366, 522
MboI	GATC	3 cut(s)	171, 364, 520
MboII	GAAGA	9 cut(s)	91, 94, 113, 170, 299, 334, 428, 628, 1000
MhlI	GDGCHC	1 cut(s)	988
MluCI	AATT	4 cut(s)	655, 818, 844, 966
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	493
MseI	TTAA	2 cut(s)	504, 969
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	2 cut(s)	475, 690
MspR9I	CCNGG	3 cut(s)	441, 690, 713
MvaI	CCWGG	2 cut(s)	441, 713
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 1011, 1020
NciI	CCSGG	1 cut(s)	690
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	171, 364, 520
NlaIII	CATG	5 cut(s)	98, 127, 136, 700, 958
NlaIV	GGNNCC	5 cut(s)	12, 394, 448, 685, 702
PfeI	GAWTC	1 cut(s)	52
PfoI	TCCNGGA	2 cut(s)	439, 711
PkrI	GCNGC	2 cut(s)	139, 785
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
PpuMI	RGGWCCY	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	709
Psp6I	CCWGG	2 cut(s)	439, 711
PspFI	CCCAGC	1 cut(s)	906
PspGI	CCWGG	2 cut(s)	439, 711
PspN4I	GGNNCC	5 cut(s)	12, 394, 448, 685, 702
PspPI	GGNCC	2 cut(s)	700, 709
PspPPI	RGGWCCY	1 cut(s)	709
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	504, 969
SatI	GCNGC	2 cut(s)	138, 784
Sau3AI	GATC	3 cut(s)	171, 364, 520
Sau96I	GGNCC	2 cut(s)	700, 709
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	3 cut(s)	441, 690, 713
SduI	GDGCHC	1 cut(s)	988
SfaNI	GCATC	1 cut(s)	249
SinI	GGWCC	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	3 cut(s)	153, 494, 1015
SmoI	CTYRAG	3 cut(s)	153, 494, 1015
Sse9I	AATT	4 cut(s)	655, 818, 844, 966
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	884, 959
StyD4I	CCNGG	3 cut(s)	439, 688, 711
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	4 cut(s)	66, 502, 903, 983
TaiI	ACGT	5 cut(s)	27, 576, 747, 812, 977
TaqI	TCGA	2 cut(s)	178, 408
TasI	AATT	4 cut(s)	655, 818, 844, 966
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	504, 969
Tru9I	TTAA	2 cut(s)	504, 969
TscAI	CASTG	2 cut(s)	908, 988
TseI	GCWGC	1 cut(s)	783
TspDTI	ATGAA	2 cut(s)	554, 911
TspGWI	ACGGA	2 cut(s)	416, 596
TspRI	CASTG	2 cut(s)	908, 988
VpaK11BI	GGWCC	1 cut(s)	709
XagI	CCTNNNNNAGG	1 cut(s)	730
XapI	RAATTY	2 cut(s)	655, 844
XspI	CTAG	2 cut(s)	884, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.