Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

32263704 .. 32265385

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAAGAACAAAGAGAAGAGTTCCGTCCGGCGAAGAACAAGATTGACATAAAGAGTTTGGACGCTCAGCTACAGAGGCATCTTGATAGAGTTTGTGAGATAGAGGAGAAGAAGAAGAAGAATGAGCAAGAGAAATACAGAGTTAGAGCGCGAGTTGGAGCCTCGGAAATACAAGAGATAGAAGAATGGGAAATCGATCCGGAAAAACTGGTTATTAAAGGGGCCTTTGCTCATGGCACGTTTGCTTCTGTTCATAGAGGTCTTTACAATAACCAACCGATTGCAGTTAAAGTGTTAGATTGGGGAGAAGAGGGTGAGAGAGCAAAAGCTTTGCAAAGAGATTTTTACCGCGAGGTTTCTGTTTGGTACAAGCTTGAACATCCCAATGTTACTAAGTGCATTGGAGCTACAACAATGACTACTTCAAAACTAATACAACAAAGTAAAAAGGAGTTGAGTAGTAATTCTGCTTGTGTGATTACCGAGTATCTTTGTGGAGGTACTCTCAAGTCTCACCTCAAAAAGTTTCGCGAAAAGAAGCTGCCTATGGAGGATGTCTTGCAACTAGCATTGGATCTTGCAAGAGGATTAAGCTATTTGCACTCGAAGAACATTGTTCACAGAGATGTTAAATCAGAAAATTTGCTTCTTGATAACAATCAGATAGTAAAGATAGCAGATTTTGGTGTCGCTCGTCTTGAGGCTTCGAATTTGAGTGAGATGACAGGCAACACCGGCACCCCTGGATACATGGCTCCTGAGGTATTGGAGTCGAAACCATATGACAAGAAATGCGACGTTTACAGCTTTGGAATTTGCTTATGGGAGATCTGTTGCTGCCAAACGCCCTACTCTAACTATTCATTTTCAGAATTAACTTCAGCTGTTGTGTATAAAAATTTAAGACCACAAATACCTAAAAACTGTCCAAGCTCCTTGGCCAAAGTAATGAAAAAATGTTGGGATGCAGAACCCAGCAAAAGGCCAGAAATGCATGAAGTTGTTACCATGTTAGAGGCTATTGACAACTCGAAACATCCCCACGGTTGCTTCTGCTTCTCCATGCGGGACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

359

Amino Acids

40.95

Weight (kDa)

7.88

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	75 - 338	1.3e-62	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	78 - 336	5e-52	Protein kinase domain
Kinase-like	PF14531	169 - 310	8.9e-07	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	737
AccII	CGCG	3 cut(s)	151, 351, 531
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	2 cut(s)	349, 1066
AclWI	GGATC	2 cut(s)	191, 582
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	4 cut(s)	640, 709, 813, 898
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	2 cut(s)	368, 502
AfiI	CCNNNNNNNGG	1 cut(s)	981
AgsI	TTSAA	2 cut(s)	377, 426
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	9 cut(s)	70, 329, 373, 407, 541, 594, 807, 884, 933
AluI	AGCT	9 cut(s)	70, 329, 373, 407, 541, 594, 807, 884, 933
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	2 cut(s)	191, 582
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	3 cut(s)	222, 939, 983
ApeKI	GCWGC	2 cut(s)	541, 837
ApoI	RAATTY	4 cut(s)	640, 709, 813, 898
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	2 cut(s)	326, 506
AsuII	TTCGAA	1 cut(s)	707
AxyI	CCTNAGG	1 cut(s)	759
BalI	TGGCCA	1 cut(s)	941
BanI	GGYRCC	1 cut(s)	737
BbvI	GCAGC	2 cut(s)	528, 824
BciT130I	CCWGG	1 cut(s)	744
BciVI	GTATCC	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	740
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	2 cut(s)	542, 838
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	2 cut(s)	543, 839
Bme1390I	CCNGG	1 cut(s)	744
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	4 cut(s)	160, 223, 739, 756
BmrFI	CCNGG	1 cut(s)	744
BmsI	GCATC	2 cut(s)	88, 955
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
Bpu1102I	GCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	707
BpuEI	CTTGAG	2 cut(s)	491, 719
Bsa29I	ATCGAT	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	4 cut(s)	162, 742, 936, 1042
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	981
Bse118I	RCCGGY	1 cut(s)	734
Bse1I	ACTGG	1 cut(s)	213
Bse21I	CCTNAGG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	744
BseCI	ATCGAT	1 cut(s)	195
BseDI	CCNNGG	4 cut(s)	162, 742, 936, 1042
BseGI	GGATG	4 cut(s)	379, 559, 970, 1036
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	981
BseMII	CTCAG	2 cut(s)	80, 750
BseNI	ACTGG	1 cut(s)	213
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	528, 824
BseYI	CCCAGC	1 cut(s)	974
Bsh1236I	CGCG	3 cut(s)	151, 351, 531
BshFI	GGCC	3 cut(s)	224, 941, 985
BshNI	GGYRCC	1 cut(s)	737
BshVI	ATCGAT	1 cut(s)	195
BsiSI	CCGG	3 cut(s)	29, 200, 735
BslI	CCNNNNNNNGG	1 cut(s)	981
BsmAI	GTCTC	1 cut(s)	516
BsnI	GGCC	3 cut(s)	224, 941, 985
Bsp119I	TTCGAA	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	196, 574, 828
Bsp1720I	GCTNAGC	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	531
BspACI	CCGC	2 cut(s)	349, 1066
BspANI	GGCC	3 cut(s)	224, 941, 985
BspCNI	CTCAG	2 cut(s)	79, 751
BspDI	ATCGAT	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	3 cut(s)	151, 351, 531
BspLI	GGNNCC	4 cut(s)	160, 223, 739, 756
BspPI	GGATC	2 cut(s)	191, 582
BspT104I	TTCGAA	1 cut(s)	707
BspT107I	GGYRCC	1 cut(s)	737
BsrFI	RCCGGY	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	213
BssAI	RCCGGY	1 cut(s)	734
BssECI	CCNNGG	4 cut(s)	162, 742, 936, 1042
BssMI	GATC	3 cut(s)	196, 574, 828
BssT1I	CCWWGG	1 cut(s)	936
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	3 cut(s)	926, 1046, 1073
Bst6I	CTCTTC	2 cut(s)	12, 303
BstBI	TTCGAA	1 cut(s)	707
BstDEI	CTNAG	3 cut(s)	66, 393, 759
BstDSI	CCRYGG	1 cut(s)	1042
BstF5I	GGATG	4 cut(s)	379, 559, 970, 1036
BstFNI	CGCG	3 cut(s)	151, 351, 531
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	199, 577, 831
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	196, 574, 828
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 735, 991
BstNI	CCWGG	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	71
BstUI	CGCG	3 cut(s)	151, 351, 531
BstV1I	GCAGC	2 cut(s)	528, 824
BstX2I	RGATCY	2 cut(s)	574, 828
BstYI	RGATCY	2 cut(s)	574, 828
Bsu15I	ATCGAT	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	740
BsuRI	GGCC	3 cut(s)	224, 941, 985
BsuTUI	ATCGAT	1 cut(s)	195
BtgI	CCRYGG	1 cut(s)	1042
BtsCI	GGATG	4 cut(s)	379, 559, 970, 1036
BtuMI	TCGCGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	222
ClaI	ATCGAT	1 cut(s)	195
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	367, 501
CviAII	CATG	5 cut(s)	233, 751, 995, 1009, 1063
CviQI	GTAC	2 cut(s)	367, 501
DdeI	CTNAG	3 cut(s)	66, 393, 759
DpnI	GATC	3 cut(s)	198, 576, 830
DpnII	GATC	3 cut(s)	196, 574, 828
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	12, 303
EarI	CTCTTC	2 cut(s)	12, 303
Eco130I	CCWWGG	1 cut(s)	936
Eco57I	CTGAAG	1 cut(s)	864
Eco81I	CCTNAGG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	936
EcoT22I	ATGCAT	1 cut(s)	996
ErhI	CCWWGG	1 cut(s)	936
FaeI	CATG	5 cut(s)	236, 754, 998, 1012, 1066
FatI	CATG	5 cut(s)	232, 750, 994, 1008, 1062
FauI	CCCGC	1 cut(s)	1059
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	2 cut(s)	542, 838
FokI	GGATG	4 cut(s)	366, 566, 977, 1023
Fsp4HI	GCNGC	2 cut(s)	542, 838
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	542, 838
GsaI	CCCAGC	1 cut(s)	978
HaeIII	GGCC	3 cut(s)	224, 941, 985
HapII	CCGG	3 cut(s)	29, 200, 735
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	5 cut(s)	236, 754, 998, 1012, 1066
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HindIII	AAGCTT	2 cut(s)	327, 371
HinfI	GANTC	1 cut(s)	770
HpaII	CCGG	3 cut(s)	29, 200, 735
HphI	GGTGA	2 cut(s)	326, 506
Hpy166II	GTNNAC	2 cut(s)	619, 802
Hpy188I	TCNGA	4 cut(s)	166, 637, 663, 871
Hpy188III	TCNNGA	6 cut(s)	83, 200, 530, 650, 698, 758
Hpy8I	GTNNAC	2 cut(s)	619, 802
Hpy99I	CGWCG	1 cut(s)	800
HpyCH4III	ACNGT	3 cut(s)	926, 1046, 1073
HpyCH4IV	ACGT	2 cut(s)	239, 798
HpyCH4V	TGCA	8 cut(s)	284, 334, 399, 562, 581, 601, 968, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 735, 991
HpyF3I	CTNAG	3 cut(s)	66, 393, 759
HpySE526I	ACGT	2 cut(s)	239, 798
Hsp92II	CATG	5 cut(s)	236, 754, 998, 1012, 1066
HspAI	GCGC	1 cut(s)	149
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	196, 574, 828
LmnI	GCTCC	4 cut(s)	158, 404, 760, 938
Lsp1109I	GCAGC	2 cut(s)	528, 824
LweI	GCATC	2 cut(s)	88, 955
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	239, 798
MaeIII	GTNAC	2 cut(s)	388, 1003
MalI	GATC	3 cut(s)	198, 576, 830
MboI	GATC	3 cut(s)	196, 574, 828
MflI	RGATCY	2 cut(s)	574, 828
MlsI	TGGCCA	1 cut(s)	941
MluCI	AATT	6 cut(s)	463, 640, 709, 813, 872, 898
MluNI	TGGCCA	1 cut(s)	941
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	1 cut(s)	136
Mox20I	TGGCCA	1 cut(s)	941
Mph1103I	ATGCAT	1 cut(s)	996
MroI	TCCGGA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	941
MseI	TTAA	6 cut(s)	216, 288, 590, 630, 875, 902
MslI	CAYNNNNRTG	2 cut(s)	384, 624
Msp20I	TGGCCA	1 cut(s)	941
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	3 cut(s)	29, 200, 735
MspR9I	CCNGG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	744
MvnI	CGCG	3 cut(s)	151, 351, 531
MwoI	GCNNNNNNNGC	3 cut(s)	76, 735, 991
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	3 cut(s)	196, 574, 828
NlaIII	CATG	5 cut(s)	236, 754, 998, 1012, 1066
NlaIV	GGNNCC	4 cut(s)	160, 223, 739, 756
NruI	TCGCGA	1 cut(s)	531
NsiI	ATGCAT	1 cut(s)	996
NspV	TTCGAA	1 cut(s)	707
PkrI	GCNGC	2 cut(s)	543, 839
PleI	GAGTC	1 cut(s)	778
PpsI	GAGTC	1 cut(s)	778
Psp6I	CCWGG	1 cut(s)	742
PspFI	CCCAGC	1 cut(s)	974
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	4 cut(s)	160, 223, 739, 756
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	2 cut(s)	574, 828
PvuII	CAGCTG	1 cut(s)	884
RruI	TCGCGA	1 cut(s)	531
RsaI	GTAC	2 cut(s)	368, 502
RsaNI	GTAC	2 cut(s)	367, 501
RseI	CAYNNNNRTG	2 cut(s)	384, 624
SaqAI	TTAA	6 cut(s)	216, 288, 590, 630, 875, 902
SatI	GCNGC	2 cut(s)	542, 838
Sau3AI	GATC	3 cut(s)	196, 574, 828
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	1 cut(s)	744
SfaNI	GCATC	2 cut(s)	88, 955
SfcI	CTRYAG	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	707
SmiMI	CAYNNNNRTG	2 cut(s)	384, 624
SmlI	CTYRAG	2 cut(s)	506, 698
SmoI	CTYRAG	2 cut(s)	506, 698
Sse9I	AATT	6 cut(s)	463, 640, 709, 813, 872, 898
SsiI	CCGC	2 cut(s)	349, 1066
SspMI	CTAG	1 cut(s)	566
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	1 cut(s)	936
TaaI	ACNGT	3 cut(s)	926, 1046, 1073
TaiI	ACGT	2 cut(s)	242, 801
TaqI	TCGA	5 cut(s)	195, 605, 707, 773, 1031
TasI	AATT	6 cut(s)	463, 640, 709, 813, 872, 898
Tru1I	TTAA	6 cut(s)	216, 288, 590, 630, 875, 902
Tru9I	TTAA	6 cut(s)	216, 288, 590, 630, 875, 902
TseI	GCWGC	2 cut(s)	541, 837
TspDTI	ATGAA	4 cut(s)	242, 852, 965, 1011
TspGWI	ACGGA	1 cut(s)	14
XapI	RAATTY	4 cut(s)	640, 709, 813, 898
XspI	CTAG	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.