Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Reverse (-)

57591118 .. 57594641

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAGGAGGGCAGTGATGGGTTTGTTAGGGCCGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTGGAGAGACATCTCAACAGGGTTTTGACTTTGGAGAAGACCAAGATGAGAGGAGACCAAGACACCAATTCCACCACCAACAACAACAACAACCTCAACAGTCTCAACCTCAGCACCACCTCCGCCGCCGCCGCCGCCACCTCCACTTCCGGCATGACTCTCTCCATCCCCAAGCGCCACAGGCAGGAGTGGGAGATCGACCCTTCCAAGCTCATCATCAAGACCGTCATTGCACGTGGCACGTTCGGCACCGTCCACCGTGGCATCTACGACGGCCAAGATGTCGCCGTGAAATTACTCGACTGGGGTGAAGAGGGTCACAGGACGGACGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGAACATCCTAATGTTACTAAGTTTATAGGGGCGACAATGGGTTCTTCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTCGTCGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGGCTTTTAAGGTCGTGGTCCAGTTGGCACTAGATCTTGCTAGAGGGTTAAGTTACCTGCACTCACAAAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGCTGCTTGACAAGACACGTACTGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTACAGTTTTGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCAGACATACCAAGATGTTGTCCAAGTGCCCTAGCAAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAACGGCCAGAGATGGATGAGGTAGTCTCAATGATCGAGGCCATTGACACAACTAAAGGTGGAGGTATGATCCCTCAAGATCAGTCTCAGGGTTGTCTCTGCTTCCGCAAGTATAGAGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

397

Amino Acids

44.05

Weight (kDa)

7.06

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	95 - 366	1.9e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	97 - 365	5.2e-49	Protein kinase domain
Kinase-like	PF14531	204 - 313	2.1e-06	Kinase-like
Pkinase_fungal	PF17667	224 - 299	6.3e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	314
AciI	CCGC	6 cut(s)	189, 192, 195, 198, 201, 1171
AclWI	GGATC	1 cut(s)	1129
AcoI	YGGCCR	2 cut(s)	340, 1070
AcsI	RAATTY	2 cut(s)	513, 985
AcuI	CTGAAG	2 cut(s)	486, 951
AcvI	CACGTG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	751, 890
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	746
AgsI	TTSAA	2 cut(s)	788, 795
AjnI	CCWGG	1 cut(s)	580
AluBI	AGCT	7 cut(s)	54, 67, 277, 422, 791, 951, 971
AluI	AGCT	7 cut(s)	54, 67, 277, 422, 791, 951, 971
Alw21I	GWGCWC	1 cut(s)	592
Alw26I	GTCTC	8 cut(s)	67, 114, 173, 812, 985, 1096, 1155, 1166
AlwI	GGATC	1 cut(s)	1129
AoxI	GGCC	4 cut(s)	30, 340, 1070, 1104
ApeKI	GCWGC	3 cut(s)	64, 419, 733
ApoI	RAATTY	2 cut(s)	513, 985
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	3 cut(s)	30, 646, 1184
AsuHPI	GGTGA	2 cut(s)	386, 698
AvaII	GGWCC	2 cut(s)	646, 1184
AxyI	CCTNAGG	1 cut(s)	846
BaeGI	GKGCMC	1 cut(s)	1024
BanI	GGYRCC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	780
BbrPI	CACGTG	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	592
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	76, 431, 720
BccI	CCATC	3 cut(s)	11, 239, 1072
BceAI	ACGGC	3 cut(s)	338, 355, 1085
BciT130I	CCWGG	1 cut(s)	582
BcoDI	GTCTC	8 cut(s)	67, 114, 173, 812, 985, 1096, 1155, 1166
BfaI	CTAG	4 cut(s)	455, 659, 669, 1025
BfoI	RGCGCY	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	693
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	7 cut(s)	65, 192, 195, 198, 201, 420, 734
BlsI	GCNGC	7 cut(s)	66, 193, 196, 199, 202, 421, 735
Bme1390I	CCNGG	1 cut(s)	582
Bme18I	GGWCC	2 cut(s)	646, 1184
BmgT120I	GGNCC	3 cut(s)	30, 646, 1184
BmiI	GGNNCC	2 cut(s)	316, 843
BmrFI	CCNGG	1 cut(s)	582
BmrI	ACTGGG	2 cut(s)	379, 822
BmsI	GCATC	3 cut(s)	339, 909, 1042
BmuI	ACTGGG	2 cut(s)	379, 822
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	1076, 1108
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	176, 947
BpuEI	CTTGAG	2 cut(s)	32, 1125
BsaAI	YACGTR	2 cut(s)	302, 749
BsaI	GGTCTC	2 cut(s)	114, 985
BsaJI	CCNNGG	2 cut(s)	325, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	4 cut(s)	374, 649, 817, 826
Bse21I	CCTNAGG	1 cut(s)	846
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	582
BseDI	CCNNGG	2 cut(s)	325, 581
BseGI	GGATG	5 cut(s)	64, 231, 460, 1057, 1087
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	190, 837, 1166
BseNI	ACTGG	4 cut(s)	374, 649, 817, 826
BseRI	GAGGAG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	3 cut(s)	76, 431, 720
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	4 cut(s)	32, 342, 1072, 1106
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	8 cut(s)	67, 114, 173, 812, 985, 1096, 1155, 1166
BsnI	GGCC	4 cut(s)	32, 342, 1072, 1106
Bso31I	GGTCTC	2 cut(s)	114, 985
Bsp1286I	GDGCHC	2 cut(s)	592, 1024
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
BspACI	CCGC	6 cut(s)	189, 192, 195, 198, 201, 1171
BspANI	GGCC	4 cut(s)	32, 342, 1072, 1106
BspCNI	CTCAG	3 cut(s)	189, 838, 1165
BspLI	GGNNCC	2 cut(s)	316, 843
BspMI	ACCTGC	1 cut(s)	693
BspPI	GGATC	1 cut(s)	1129
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	2 cut(s)	114, 985
BsrDI	GCAATG	1 cut(s)	294
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	4 cut(s)	374, 649, 817, 826
BssECI	CCNNGG	2 cut(s)	325, 581
BssMI	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
BssSI	CACGAG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	1 cut(s)	582
Bst4CI	ACNGT	7 cut(s)	167, 292, 319, 326, 754, 893, 1188
Bst6I	CTCTTC	1 cut(s)	372
BstAUI	TGTACA	1 cut(s)	888
BstBAI	YACGTR	2 cut(s)	302, 749
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	6 cut(s)	176, 413, 474, 846, 947, 1152
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	5 cut(s)	64, 231, 460, 1057, 1087
BstH2I	RGCGCY	1 cut(s)	244
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	7 cut(s)	37, 46, 264, 664, 1101, 1137, 1147
BstMAI	GTCTC	8 cut(s)	67, 114, 173, 812, 985, 1096, 1155, 1166
BstMBI	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 200, 247, 312, 404
BstNI	CCWGG	1 cut(s)	582
BstNSI	RCATGY	3 cut(s)	544, 733, 934
BstSCI	CCNGG	1 cut(s)	580
BstSLI	GKGCMC	1 cut(s)	1024
BstV1I	GCAGC	3 cut(s)	76, 431, 720
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu36I	CCTNAGG	1 cut(s)	846
BsuRI	GGCC	4 cut(s)	32, 342, 1072, 1106
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	1057
BtsCI	GGATG	5 cut(s)	64, 231, 460, 1057, 1087
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	1 cut(s)	542
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	30, 646, 1184
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	750, 889
CviAII	CATG	6 cut(s)	220, 541, 730, 808, 838, 931
CviQI	GTAC	2 cut(s)	750, 889
DdeI	CTNAG	6 cut(s)	176, 413, 474, 846, 947, 1152
DpnI	GATC	7 cut(s)	36, 45, 263, 663, 1100, 1136, 1146
DpnII	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
EaeI	YGGCCR	2 cut(s)	340, 1070
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
EciI	GGCGGA	1 cut(s)	178
Eco31I	GGTCTC	2 cut(s)	114, 985
Eco47I	GGWCC	2 cut(s)	646, 1184
Eco57I	CTGAAG	2 cut(s)	486, 951
Eco72I	CACGTG	1 cut(s)	302
Eco81I	CCTNAGG	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	580
FaeI	CATG	6 cut(s)	223, 544, 733, 811, 841, 934
FalI	AAGNNNNNCTT	2 cut(s)	406, 438
FatI	CATG	6 cut(s)	219, 540, 729, 807, 837, 930
Fnu4HI	GCNGC	7 cut(s)	65, 192, 195, 198, 201, 420, 734
FokI	GGATG	5 cut(s)	71, 218, 447, 1064, 1094
Fsp4HI	GCNGC	7 cut(s)	65, 192, 195, 198, 201, 420, 734
FspBI	CTAG	4 cut(s)	455, 659, 669, 1025
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	7 cut(s)	65, 192, 195, 198, 201, 420, 734
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	244
HaeIII	GGCC	4 cut(s)	32, 342, 1072, 1106
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	223, 544, 733, 811, 841, 934
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	2 cut(s)	386, 698
Hpy166II	GTNNAC	3 cut(s)	322, 706, 889
Hpy188I	TCNGA	5 cut(s)	39, 505, 519, 876, 958
Hpy188III	TCNNGA	6 cut(s)	49, 286, 757, 845, 941, 1142
Hpy8I	GTNNAC	3 cut(s)	322, 706, 889
Hpy99I	CGWCG	2 cut(s)	341, 569
HpyAV	CCTTC	2 cut(s)	279, 615
HpyCH4III	ACNGT	7 cut(s)	167, 292, 319, 326, 754, 893, 1188
HpyCH4IV	ACGT	3 cut(s)	301, 308, 748
HpyCH4V	TGCA	2 cut(s)	299, 688
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 200, 247, 312, 404
HpyF3I	CTNAG	6 cut(s)	176, 413, 474, 846, 947, 1152
HpySE526I	ACGT	3 cut(s)	301, 308, 748
Hsp92II	CATG	6 cut(s)	223, 544, 733, 811, 841, 934
HspAI	GCGC	1 cut(s)	241
Kzo9I	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	3 cut(s)	76, 431, 720
LweI	GCATC	3 cut(s)	339, 909, 1042
MaeI	CTAG	4 cut(s)	455, 659, 669, 1025
MaeII	ACGT	3 cut(s)	301, 308, 748
MaeIII	GTNAC	6 cut(s)	383, 469, 680, 833, 926, 961
MalI	GATC	7 cut(s)	36, 45, 263, 663, 1100, 1136, 1146
MboI	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
MboII	GAAGA	4 cut(s)	115, 389, 492, 569
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	592, 1024
MluCI	AATT	6 cut(s)	133, 359, 402, 513, 534, 985
MlyI	GAGTC	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	2 cut(s)	636, 677
MslI	CAYNNNNRTG	2 cut(s)	465, 711
MspA1I	CMGCKG	2 cut(s)	67, 971
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	5 cut(s)	197, 200, 247, 312, 404
NdeII	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
NlaIII	CATG	6 cut(s)	223, 544, 733, 811, 841, 934
NlaIV	GGNNCC	2 cut(s)	316, 843
NmuCI	GTSAC	3 cut(s)	383, 926, 961
NspI	RCATGY	3 cut(s)	544, 733, 934
PaeI	GCATGC	1 cut(s)	544
PdmI	GAANNNNTTC	1 cut(s)	576
PkrI	GCNGC	7 cut(s)	66, 193, 196, 199, 202, 421, 735
PleI	GAGTC	1 cut(s)	217
PmaCI	CACGTG	1 cut(s)	302
PmlI	CACGTG	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	217
Ppu21I	YACGTR	2 cut(s)	302, 749
PsiI	TTATAA	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	580
PspCI	CACGTG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	580
PspN4I	GGNNCC	2 cut(s)	316, 843
PspPI	GGNCC	3 cut(s)	30, 646, 1184
PsuI	RGATCY	1 cut(s)	661
PvuII	CAGCTG	2 cut(s)	67, 971
RsaI	GTAC	2 cut(s)	751, 890
RsaNI	GTAC	2 cut(s)	750, 889
RseI	CAYNNNNRTG	2 cut(s)	465, 711
SaqAI	TTAA	2 cut(s)	636, 677
SatI	GCNGC	7 cut(s)	65, 192, 195, 198, 201, 420, 734
Sau3AI	GATC	7 cut(s)	34, 43, 261, 661, 1098, 1134, 1144
Sau96I	GGNCC	3 cut(s)	30, 646, 1184
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	582
SduI	GDGCHC	2 cut(s)	592, 1024
SfaNI	GCATC	3 cut(s)	339, 909, 1042
SinI	GGWCC	2 cut(s)	646, 1184
SmiMI	CAYNNNNRTG	2 cut(s)	465, 711
SmlI	CTYRAG	2 cut(s)	47, 1140
SmoI	CTYRAG	2 cut(s)	47, 1140
SphI	GCATGC	1 cut(s)	544
Sse9I	AATT	6 cut(s)	133, 359, 402, 513, 534, 985
SsiI	CCGC	6 cut(s)	189, 192, 195, 198, 201, 1171
SspMI	CTAG	4 cut(s)	455, 659, 669, 1025
StyD4I	CCNGG	1 cut(s)	580
TaaI	ACNGT	7 cut(s)	167, 292, 319, 326, 754, 893, 1188
TaiI	ACGT	3 cut(s)	304, 311, 751
TaqI	TCGA	3 cut(s)	264, 366, 1101
TasI	AATT	6 cut(s)	133, 359, 402, 513, 534, 985
TatI	WGTACW	1 cut(s)	888
TauI	GCSGC	4 cut(s)	194, 197, 200, 203
Tru1I	TTAA	2 cut(s)	636, 677
Tru9I	TTAA	2 cut(s)	636, 677
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	383, 926, 961
TseI	GCWGC	3 cut(s)	64, 419, 733
Tsp45I	GTSAC	3 cut(s)	383, 926, 961
TspDTI	ATGAA	2 cut(s)	17, 1052
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	646, 1184
XapI	RAATTY	2 cut(s)	513, 985
XceI	RCATGY	3 cut(s)	544, 733, 934
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	4 cut(s)	455, 659, 669, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.