Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

10352115 .. 10356386

Gene Structure 4272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG138900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAAGGAGGGCAGTGATGGGTTTGTTAGGGCCGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTGGAGAGACATCTCAACAGGGTTTTGACTTTGGAGAAGACCAAGATGAGAGGAGACCAAGACACCAATTCCACCACCACCAACAACAACAACAACAACAACAACAACAACCTCAACAGTCTCAACCTCAGCACCACCTCCGCCGCCTCCGCCGCCGCCACCTCCACTTCCGGCATGACTCTCTCCATCCCCAAGCGCCACAGGCAGGAGTGGGAGATCGACCCTTCCAAGCTCATCATCAAGACCGTCATTGCACGTGGCACGTTCGGCACCGTCCACCGTGGCATCTACGACGGCCAAGATGTCGCCGTGAAATTACTCGACTGGGGTGAAGAGGGTCACAGGACGGACGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGACCATCCTAATGTTACTAAGTTTATAGGGGCGACAATGGGTTCTTCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTCGTCGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGGCTTTTAAGGTCGTGGTCCAGTTGGCACTAGATCTTGCTAGAGGGTTAAGTTACCTGCACTCACAAAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGCTGCTTGACAAGACACGTACTGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTACAGTTTTGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCAGACATACCAAGATGTTGTCCAAGTGCTCTAGCAAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAACGGCCAGAGATGGATGAGGTAGTCTCAATGATCGAGGCCATTGACACAACTAAAGGTGGAGGTATGATCCCTCAAGATCAGTCTCAGGGTTGTCTCTGCTTCCGCAAGTATAGAGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

403

Amino Acids

44.79

Weight (kDa)

7.06

Isoelectric Point (pI)

32.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	102 - 373	1.5e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	104 - 372	4.7e-49	Protein kinase domain
Kinase-like	PF14531	211 - 320	2.1e-06	Kinase-like
Pkinase_fungal	PF17667	231 - 306	6.4e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	6 cut(s)	207, 210, 216, 219, 222, 1192
AclWI	GGATC	1 cut(s)	1150
AcoI	YGGCCR	2 cut(s)	361, 1091
AcsI	RAATTY	2 cut(s)	534, 1006
AcuI	CTGAAG	2 cut(s)	507, 972
AcvI	CACGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	772, 911
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	767
AgsI	TTSAA	2 cut(s)	809, 816
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	7 cut(s)	54, 67, 298, 443, 812, 972, 992
AluI	AGCT	7 cut(s)	54, 67, 298, 443, 812, 972, 992
Alw21I	GWGCWC	2 cut(s)	613, 1045
Alw26I	GTCTC	8 cut(s)	67, 114, 191, 833, 1006, 1117, 1176, 1187
AlwI	GGATC	1 cut(s)	1150
AoxI	GGCC	4 cut(s)	30, 361, 1091, 1125
ApeKI	GCWGC	3 cut(s)	64, 440, 754
ApoI	RAATTY	2 cut(s)	534, 1006
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	3 cut(s)	30, 667, 1205
AsuHPI	GGTGA	2 cut(s)	407, 719
AvaII	GGWCC	2 cut(s)	667, 1205
AxyI	CCTNAGG	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	335
BauI	CACGAG	1 cut(s)	801
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	613, 1045
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	76, 452, 741
BccI	CCATC	4 cut(s)	11, 260, 489, 1093
BceAI	ACGGC	3 cut(s)	359, 376, 1106
BciT130I	CCWGG	1 cut(s)	603
BcoDI	GTCTC	8 cut(s)	67, 114, 191, 833, 1006, 1117, 1176, 1187
BfaI	CTAG	4 cut(s)	476, 680, 690, 1046
BfoI	RGCGCY	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	714
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	6 cut(s)	65, 210, 219, 222, 441, 755
BlsI	GCNGC	6 cut(s)	66, 211, 220, 223, 442, 756
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	667, 1205
BmgT120I	GGNCC	3 cut(s)	30, 667, 1205
BmiI	GGNNCC	2 cut(s)	337, 864
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	2 cut(s)	400, 843
BmsI	GCATC	3 cut(s)	360, 930, 1063
BmuI	ACTGGG	2 cut(s)	400, 843
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	1097, 1129
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	194, 968
BpuEI	CTTGAG	2 cut(s)	32, 1146
BsaAI	YACGTR	2 cut(s)	323, 770
BsaI	GGTCTC	2 cut(s)	114, 1006
BsaJI	CCNNGG	2 cut(s)	346, 602
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	4 cut(s)	395, 670, 838, 847
Bse21I	CCTNAGG	1 cut(s)	867
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	346, 602
BseGI	GGATG	5 cut(s)	64, 252, 481, 1078, 1108
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	3 cut(s)	208, 858, 1187
BseNI	ACTGG	4 cut(s)	395, 670, 838, 847
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	76, 452, 741
BsgI	GTGCAG	1 cut(s)	692
BshFI	GGCC	4 cut(s)	32, 363, 1093, 1127
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	613, 1045
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	8 cut(s)	67, 114, 191, 833, 1006, 1117, 1176, 1187
BsnI	GGCC	4 cut(s)	32, 363, 1093, 1127
Bso31I	GGTCTC	2 cut(s)	114, 1006
Bsp1286I	GDGCHC	2 cut(s)	613, 1045
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
BspACI	CCGC	6 cut(s)	207, 210, 216, 219, 222, 1192
BspANI	GGCC	4 cut(s)	32, 363, 1093, 1127
BspCNI	CTCAG	3 cut(s)	207, 859, 1186
BspLI	GGNNCC	2 cut(s)	337, 864
BspMI	ACCTGC	1 cut(s)	714
BspPI	GGATC	1 cut(s)	1150
BspT107I	GGYRCC	1 cut(s)	335
BspTNI	GGTCTC	2 cut(s)	114, 1006
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	4 cut(s)	395, 670, 838, 847
BssECI	CCNNGG	2 cut(s)	346, 602
BssMI	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
BssSI	CACGAG	1 cut(s)	801
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	7 cut(s)	185, 313, 340, 347, 775, 914, 1209
Bst6I	CTCTTC	1 cut(s)	393
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	2 cut(s)	323, 770
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	6 cut(s)	194, 434, 495, 867, 968, 1173
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	5 cut(s)	64, 252, 481, 1078, 1108
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	264
BstKTI	GATC	7 cut(s)	37, 46, 285, 685, 1122, 1158, 1168
BstMAI	GTCTC	8 cut(s)	67, 114, 191, 833, 1006, 1117, 1176, 1187
BstMBI	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 218, 268, 333, 425
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	3 cut(s)	565, 754, 955
BstSCI	CCNGG	1 cut(s)	601
BstV1I	GCAGC	3 cut(s)	76, 452, 741
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
Bsu36I	CCTNAGG	1 cut(s)	867
BsuRI	GGCC	4 cut(s)	32, 363, 1093, 1127
BtgI	CCRYGG	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	1078
BtsCI	GGATG	5 cut(s)	64, 252, 481, 1078, 1108
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	1 cut(s)	563
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	3 cut(s)	30, 667, 1205
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	771, 910
CviAII	CATG	6 cut(s)	241, 562, 751, 829, 859, 952
CviQI	GTAC	2 cut(s)	771, 910
DdeI	CTNAG	6 cut(s)	194, 434, 495, 867, 968, 1173
DpnI	GATC	7 cut(s)	36, 45, 284, 684, 1121, 1157, 1167
DpnII	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
EaeI	YGGCCR	2 cut(s)	361, 1091
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	2 cut(s)	196, 205
Eco31I	GGTCTC	2 cut(s)	114, 1006
Eco47I	GGWCC	2 cut(s)	667, 1205
Eco57I	CTGAAG	2 cut(s)	507, 972
Eco72I	CACGTG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	867
EcoRII	CCWGG	1 cut(s)	601
FaeI	CATG	6 cut(s)	244, 565, 754, 832, 862, 955
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FatI	CATG	6 cut(s)	240, 561, 750, 828, 858, 951
Fnu4HI	GCNGC	6 cut(s)	65, 210, 219, 222, 441, 755
FokI	GGATG	5 cut(s)	71, 239, 468, 1085, 1115
Fsp4HI	GCNGC	6 cut(s)	65, 210, 219, 222, 441, 755
FspBI	CTAG	4 cut(s)	476, 680, 690, 1046
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	6 cut(s)	65, 210, 219, 222, 441, 755
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	32, 363, 1093, 1127
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	1 cut(s)	264
Hin1II	CATG	6 cut(s)	244, 565, 754, 832, 862, 955
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	810
HinfI	GANTC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	2 cut(s)	407, 719
Hpy166II	GTNNAC	3 cut(s)	343, 727, 910
Hpy188I	TCNGA	5 cut(s)	39, 526, 540, 897, 979
Hpy188III	TCNNGA	6 cut(s)	49, 307, 778, 866, 962, 1163
Hpy8I	GTNNAC	3 cut(s)	343, 727, 910
Hpy99I	CGWCG	2 cut(s)	362, 590
HpyAV	CCTTC	2 cut(s)	300, 636
HpyCH4III	ACNGT	7 cut(s)	185, 313, 340, 347, 775, 914, 1209
HpyCH4IV	ACGT	3 cut(s)	322, 329, 769
HpyCH4V	TGCA	2 cut(s)	320, 709
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 218, 268, 333, 425
HpyF3I	CTNAG	6 cut(s)	194, 434, 495, 867, 968, 1173
HpySE526I	ACGT	3 cut(s)	322, 329, 769
Hsp92II	CATG	6 cut(s)	244, 565, 754, 832, 862, 955
HspAI	GCGC	1 cut(s)	262
Kzo9I	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	3 cut(s)	76, 452, 741
LweI	GCATC	3 cut(s)	360, 930, 1063
MaeI	CTAG	4 cut(s)	476, 680, 690, 1046
MaeII	ACGT	3 cut(s)	322, 329, 769
MaeIII	GTNAC	6 cut(s)	404, 490, 701, 854, 947, 982
MalI	GATC	7 cut(s)	36, 45, 284, 684, 1121, 1157, 1167
MboI	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
MboII	GAAGA	4 cut(s)	115, 410, 513, 590
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	613, 1045
MluCI	AATT	6 cut(s)	133, 380, 423, 534, 555, 1006
MlyI	GAGTC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	2 cut(s)	657, 698
MslI	CAYNNNNRTG	2 cut(s)	486, 732
MspA1I	CMGCKG	2 cut(s)	67, 992
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	5 cut(s)	215, 218, 268, 333, 425
NdeII	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
NlaIII	CATG	6 cut(s)	244, 565, 754, 832, 862, 955
NlaIV	GGNNCC	2 cut(s)	337, 864
NmuCI	GTSAC	3 cut(s)	404, 947, 982
NspI	RCATGY	3 cut(s)	565, 754, 955
PaeI	GCATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	597
PkrI	GCNGC	6 cut(s)	66, 211, 220, 223, 442, 756
PleI	GAGTC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	2 cut(s)	323, 770
PsiI	TTATAA	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	601
PspCI	CACGTG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	337, 864
PspPI	GGNCC	3 cut(s)	30, 667, 1205
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	2 cut(s)	67, 992
RsaI	GTAC	2 cut(s)	772, 911
RsaNI	GTAC	2 cut(s)	771, 910
RseI	CAYNNNNRTG	2 cut(s)	486, 732
SaqAI	TTAA	2 cut(s)	657, 698
SatI	GCNGC	6 cut(s)	65, 210, 219, 222, 441, 755
Sau3AI	GATC	7 cut(s)	34, 43, 282, 682, 1119, 1155, 1165
Sau96I	GGNCC	3 cut(s)	30, 667, 1205
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	2 cut(s)	613, 1045
SfaNI	GCATC	3 cut(s)	360, 930, 1063
SinI	GGWCC	2 cut(s)	667, 1205
SmiMI	CAYNNNNRTG	2 cut(s)	486, 732
SmlI	CTYRAG	2 cut(s)	47, 1161
SmoI	CTYRAG	2 cut(s)	47, 1161
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	6 cut(s)	133, 380, 423, 534, 555, 1006
SsiI	CCGC	6 cut(s)	207, 210, 216, 219, 222, 1192
SspMI	CTAG	4 cut(s)	476, 680, 690, 1046
StyD4I	CCNGG	1 cut(s)	601
TaaI	ACNGT	7 cut(s)	185, 313, 340, 347, 775, 914, 1209
TaiI	ACGT	3 cut(s)	325, 332, 772
TaqI	TCGA	3 cut(s)	285, 387, 1122
TasI	AATT	6 cut(s)	133, 380, 423, 534, 555, 1006
TatI	WGTACW	1 cut(s)	909
TauI	GCSGC	3 cut(s)	212, 221, 224
Tru1I	TTAA	2 cut(s)	657, 698
Tru9I	TTAA	2 cut(s)	657, 698
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	404, 947, 982
TseI	GCWGC	3 cut(s)	64, 440, 754
Tsp45I	GTSAC	3 cut(s)	404, 947, 982
TspDTI	ATGAA	2 cut(s)	17, 1073
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	667, 1205
XapI	RAATTY	2 cut(s)	534, 1006
XceI	RCATGY	3 cut(s)	565, 754, 955
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	4 cut(s)	476, 680, 690, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.