Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

11180152 .. 11184196

Gene Structure 4045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAAGGAGGGCAGTGATGGGTTTGTTAGGGCCGATCAGATTGATCTCAAGAGCTTGGATGAGCAGCTGGAGAGACATCTCAACAGGGTGTTGACTTTGGAGAAGACCAAGATGAGAGGAGACCAAGACACCAATTCCACCACCACCACCACCACCAACAACAACAACAACCTCAACAGTCTCAACCTCAGCACCACCTCCGCCGCCGCCACCTCCACTTCCGGCATGACTCTCTCCATCCCCAAGCGCCACAGGCAGGAGTGGGAGATCGACCCTTCCAAGCTCATCATCAAGACCGTCATTGCACGTGGCACGTTCGGCACCGTCCACCGTGGCATCTACGATGGCCAAGATGTCGCCGTGAAATTACTCGACTGGGGTGAAGAGGGTCACAGGACGGATGCTGAAATTGCTTCTCTAAGGGCAGCTTTTACCCAAGAAGTTGCTGTCTGGCATAAACTAGACCATCCTAATGTTACTAAGTTTATAGGGGCAACAATGGGTTCTTCAGAACTACAAATTCAGACTGAAAATGGTCAAATTGGCATGCCAAGTAATATCTGTTGTGTCGTCGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGTTGGCTTTTAAGGTCGTGGTCCAGTTGGCACAAGATCTTGCTAGAGGGTTAAGTTACCTGCACTCACAAAAGATTGTTCACCGAGATGTAAAGACAGAGAACATGCTGCTTGACAAGACACGTACTGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCTAATGACATGACTGGGGAGACTGGCACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAATCGGAAATGTGATGTGTACAGTTTTGGCATCTGTCTATGGGAGATATACTGCTGTGACATGCCATATCCTGACCTTAGCTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCAGACATACCAAGATGTTGTCCAAGTGCTCTAGCAAATGTAATGAAGCGATGTTGGGATGCTAACCCAGACAAACGGCCCGAGATGGATGAGGTAGTCTCAATGATCGAGGCCATTGACACAACTAAAGGTGGAGGTATGATCCCTCAAGATCAGTCTCAGGGTTGTCTCTGCTTCCGCAAGTATAGAGGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

398

Amino Acids

44.31

Weight (kDa)

7.06

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	97 - 368	1.3e-61	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	99 - 367	2.8e-49	Protein kinase domain
Pkinase_fungal	PF17667	223 - 301	4.4e-06	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	320
AciI	CCGC	4 cut(s)	201, 204, 207, 1177
AclWI	GGATC	1 cut(s)	1135
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	519, 991
AcuI	CTGAAG	2 cut(s)	492, 957
AcvI	CACGTG	1 cut(s)	308
AfaI	GTAC	2 cut(s)	757, 896
AfiI	CCNNNNNNNGG	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	752
AgsI	TTSAA	2 cut(s)	794, 801
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	7 cut(s)	54, 67, 283, 428, 797, 957, 977
AluI	AGCT	7 cut(s)	54, 67, 283, 428, 797, 957, 977
Alw21I	GWGCWC	2 cut(s)	598, 1030
Alw26I	GTCTC	8 cut(s)	67, 114, 185, 818, 991, 1102, 1161, 1172
AlwI	GGATC	1 cut(s)	1135
Ama87I	CYCGRG	1 cut(s)	1079
AoxI	GGCC	4 cut(s)	30, 346, 1076, 1110
ApeKI	GCWGC	3 cut(s)	64, 425, 739
ApoI	RAATTY	2 cut(s)	519, 991
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	4 cut(s)	30, 652, 1077, 1190
AsuHPI	GGTGA	2 cut(s)	392, 704
AvaI	CYCGRG	1 cut(s)	1079
AvaII	GGWCC	2 cut(s)	652, 1190
AxyI	CCTNAGG	1 cut(s)	852
BalI	TGGCCA	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	786
BbrPI	CACGTG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	110
Bbv12I	GWGCWC	2 cut(s)	598, 1030
BbvCI	CCTCAGC	1 cut(s)	188
BbvI	GCAGC	3 cut(s)	76, 437, 726
BccI	CCATC	5 cut(s)	11, 245, 338, 474, 1078
BceAI	ACGGC	2 cut(s)	344, 1091
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	8 cut(s)	67, 114, 185, 818, 991, 1102, 1161, 1172
BfaI	CTAG	3 cut(s)	461, 675, 1031
BfoI	RGCGCY	1 cut(s)	250
BfuAI	ACCTGC	1 cut(s)	699
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	5 cut(s)	65, 204, 207, 426, 740
BlsI	GCNGC	5 cut(s)	66, 205, 208, 427, 741
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	2 cut(s)	652, 1190
BmeT110I	CYCGRG	1 cut(s)	1079
BmgT120I	GGNCC	4 cut(s)	30, 652, 1077, 1190
BmiI	GGNNCC	2 cut(s)	322, 849
BmrFI	CCNGG	1 cut(s)	588
BmrI	ACTGGG	2 cut(s)	385, 828
BmsI	GCATC	4 cut(s)	345, 391, 915, 1048
BmuI	ACTGGG	2 cut(s)	385, 828
BpiI	GAAGAC	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	1082, 1114
BpmI	CTGGAG	1 cut(s)	89
Bpu10I	CCTNAGC	2 cut(s)	188, 953
BpuEI	CTTGAG	2 cut(s)	32, 1131
BsaAI	YACGTR	2 cut(s)	308, 755
BsaI	GGTCTC	2 cut(s)	114, 991
BsaJI	CCNNGG	2 cut(s)	331, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	4 cut(s)	380, 655, 823, 832
Bse21I	CCTNAGG	1 cut(s)	852
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	2 cut(s)	331, 587
BseGI	GGATG	6 cut(s)	64, 237, 406, 466, 1063, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	202, 843, 1172
BseNI	ACTGG	4 cut(s)	380, 655, 823, 832
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	76, 437, 726
BsgI	GTGCAG	1 cut(s)	677
BshFI	GGCC	4 cut(s)	32, 348, 1078, 1112
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	2 cut(s)	598, 1030
BsiHKCI	CYCGRG	1 cut(s)	1079
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	8 cut(s)	67, 114, 185, 818, 991, 1102, 1161, 1172
BsnI	GGCC	4 cut(s)	32, 348, 1078, 1112
Bso31I	GGTCTC	2 cut(s)	114, 991
BsoBI	CYCGRG	1 cut(s)	1079
Bsp1286I	GDGCHC	2 cut(s)	598, 1030
Bsp1407I	TGTACA	1 cut(s)	894
Bsp143I	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
BspACI	CCGC	4 cut(s)	201, 204, 207, 1177
BspANI	GGCC	4 cut(s)	32, 348, 1078, 1112
BspCNI	CTCAG	3 cut(s)	201, 844, 1171
BspLI	GGNNCC	2 cut(s)	322, 849
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	1135
BspT107I	GGYRCC	1 cut(s)	320
BspTNI	GGTCTC	2 cut(s)	114, 991
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	894
BsrI	ACTGG	4 cut(s)	380, 655, 823, 832
BssECI	CCNNGG	2 cut(s)	331, 587
BssMI	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
BssSI	CACGAG	1 cut(s)	786
Bst2BI	CACGAG	1 cut(s)	786
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	7 cut(s)	179, 298, 325, 332, 760, 899, 1194
Bst6I	CTCTTC	1 cut(s)	378
BstAUI	TGTACA	1 cut(s)	894
BstBAI	YACGTR	2 cut(s)	308, 755
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	6 cut(s)	188, 419, 480, 852, 953, 1158
BstDSI	CCRYGG	1 cut(s)	331
BstF5I	GGATG	6 cut(s)	64, 237, 406, 466, 1063, 1093
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	7 cut(s)	37, 46, 270, 670, 1107, 1143, 1153
BstMAI	GTCTC	8 cut(s)	67, 114, 185, 818, 991, 1102, 1161, 1172
BstMBI	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 318, 410
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	3 cut(s)	550, 739, 940
BstSCI	CCNGG	1 cut(s)	586
BstV1I	GCAGC	3 cut(s)	76, 437, 726
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
Bsu36I	CCTNAGG	1 cut(s)	852
BsuRI	GGCC	4 cut(s)	32, 348, 1078, 1112
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	1063
BtsCI	GGATG	6 cut(s)	64, 237, 406, 466, 1063, 1093
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	699
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	4 cut(s)	30, 652, 1077, 1190
Csp6I	GTAC	2 cut(s)	756, 895
CviAII	CATG	6 cut(s)	226, 547, 736, 814, 844, 937
CviQI	GTAC	2 cut(s)	756, 895
DdeI	CTNAG	6 cut(s)	188, 419, 480, 852, 953, 1158
DpnI	GATC	7 cut(s)	36, 45, 269, 669, 1106, 1142, 1152
DpnII	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	190
Eco31I	GGTCTC	2 cut(s)	114, 991
Eco47I	GGWCC	2 cut(s)	652, 1190
Eco57I	CTGAAG	2 cut(s)	492, 957
Eco72I	CACGTG	1 cut(s)	308
Eco81I	CCTNAGG	1 cut(s)	852
Eco88I	CYCGRG	1 cut(s)	1079
EcoRII	CCWGG	1 cut(s)	586
FaeI	CATG	6 cut(s)	229, 550, 739, 817, 847, 940
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FatI	CATG	6 cut(s)	225, 546, 735, 813, 843, 936
Fnu4HI	GCNGC	5 cut(s)	65, 204, 207, 426, 740
FokI	GGATG	6 cut(s)	71, 224, 413, 453, 1070, 1100
Fsp4HI	GCNGC	5 cut(s)	65, 204, 207, 426, 740
FspBI	CTAG	3 cut(s)	461, 675, 1031
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	5 cut(s)	65, 204, 207, 426, 740
GsuI	CTGGAG	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	4 cut(s)	32, 348, 1078, 1112
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	6 cut(s)	229, 550, 739, 817, 847, 940
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	392, 704
Hpy166II	GTNNAC	4 cut(s)	93, 328, 712, 895
Hpy188I	TCNGA	5 cut(s)	39, 511, 525, 882, 964
Hpy188III	TCNNGA	6 cut(s)	49, 292, 763, 851, 947, 1148
Hpy8I	GTNNAC	4 cut(s)	93, 328, 712, 895
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	285, 621
HpyCH4III	ACNGT	7 cut(s)	179, 298, 325, 332, 760, 899, 1194
HpyCH4IV	ACGT	3 cut(s)	307, 314, 754
HpyCH4V	TGCA	2 cut(s)	305, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 318, 410
HpyF3I	CTNAG	6 cut(s)	188, 419, 480, 852, 953, 1158
HpySE526I	ACGT	3 cut(s)	307, 314, 754
Hsp92II	CATG	6 cut(s)	229, 550, 739, 817, 847, 940
HspAI	GCGC	1 cut(s)	247
Kzo9I	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	3 cut(s)	76, 437, 726
LweI	GCATC	4 cut(s)	345, 391, 915, 1048
MaeI	CTAG	3 cut(s)	461, 675, 1031
MaeII	ACGT	3 cut(s)	307, 314, 754
MaeIII	GTNAC	6 cut(s)	389, 475, 686, 839, 932, 967
MalI	GATC	7 cut(s)	36, 45, 269, 669, 1106, 1142, 1152
MboI	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
MboII	GAAGA	4 cut(s)	115, 395, 498, 575
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	598, 1030
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	6 cut(s)	133, 365, 408, 519, 540, 991
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	223
Mox20I	TGGCCA	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	2 cut(s)	642, 683
MslI	CAYNNNNRTG	2 cut(s)	471, 717
Msp20I	TGGCCA	1 cut(s)	348
MspA1I	CMGCKG	2 cut(s)	67, 977
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	3 cut(s)	253, 318, 410
NdeII	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
NlaIII	CATG	6 cut(s)	229, 550, 739, 817, 847, 940
NlaIV	GGNNCC	2 cut(s)	322, 849
NmuCI	GTSAC	3 cut(s)	389, 932, 967
NspI	RCATGY	3 cut(s)	550, 739, 940
PaeI	GCATGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	582
PkrI	GCNGC	5 cut(s)	66, 205, 208, 427, 741
PleI	GAGTC	1 cut(s)	223
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	223
Ppu21I	YACGTR	2 cut(s)	308, 755
PsiI	TTATAA	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	586
PspCI	CACGTG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	2 cut(s)	322, 849
PspPI	GGNCC	4 cut(s)	30, 652, 1077, 1190
PsuI	RGATCY	1 cut(s)	667
PvuII	CAGCTG	2 cut(s)	67, 977
RsaI	GTAC	2 cut(s)	757, 896
RsaNI	GTAC	2 cut(s)	756, 895
RseI	CAYNNNNRTG	2 cut(s)	471, 717
SaqAI	TTAA	2 cut(s)	642, 683
SatI	GCNGC	5 cut(s)	65, 204, 207, 426, 740
Sau3AI	GATC	7 cut(s)	34, 43, 267, 667, 1104, 1140, 1150
Sau96I	GGNCC	4 cut(s)	30, 652, 1077, 1190
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	2 cut(s)	598, 1030
SfaNI	GCATC	4 cut(s)	345, 391, 915, 1048
SinI	GGWCC	2 cut(s)	652, 1190
SmiMI	CAYNNNNRTG	2 cut(s)	471, 717
SmlI	CTYRAG	2 cut(s)	47, 1146
SmoI	CTYRAG	2 cut(s)	47, 1146
SphI	GCATGC	1 cut(s)	550
Sse9I	AATT	6 cut(s)	133, 365, 408, 519, 540, 991
SsiI	CCGC	4 cut(s)	201, 204, 207, 1177
SspMI	CTAG	3 cut(s)	461, 675, 1031
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	7 cut(s)	179, 298, 325, 332, 760, 899, 1194
TaiI	ACGT	3 cut(s)	310, 317, 757
TaqI	TCGA	3 cut(s)	270, 372, 1107
TasI	AATT	6 cut(s)	133, 365, 408, 519, 540, 991
TatI	WGTACW	1 cut(s)	894
TauI	GCSGC	2 cut(s)	206, 209
Tru1I	TTAA	2 cut(s)	642, 683
Tru9I	TTAA	2 cut(s)	642, 683
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	3 cut(s)	389, 932, 967
TseI	GCWGC	3 cut(s)	64, 425, 739
Tsp45I	GTSAC	3 cut(s)	389, 932, 967
TspDTI	ATGAA	2 cut(s)	17, 1058
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	2 cut(s)	652, 1190
XapI	RAATTY	2 cut(s)	519, 991
XceI	RCATGY	3 cut(s)	550, 739, 940
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	3 cut(s)	461, 675, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.