Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

17888533 .. 17891662

Gene Structure 3130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAGAGACCCCGAAACCAATTCCAACAGCATCCACCTCACCACCACCTCCACCTCCAATTCAACCGTCCCCACCACCGCCACCTCCACTTCCTCCAGGACCCTCTCCATCCCCAAACGCCACCGCCAGGAGTGGGAGATCGATCCCTCCAAGCTCCTCATCAAGTCCGTCATTGCTCGTGGCACCTTCGGCACCGTCCACCGTGGCATCTACGACGGTCAAGACGTCGCCGTTAAACTGCTTGACTGGGGTGAAGAGGGTCACAGGACAGACTCCGAGATTGCTTCTCTAAGAGCAGCTTTTACTCAAGAAGTTGCTGTCTGGCATAAACTAGATCATCCTAATGTTACTAAGTTTATTGGGGCGACAATGGGTTCATCAGATCGACCAATACAGACAGAAAATGGTCAAATTGGCATGCCAACTAATATCTGTTGTGTCGTTGTGGAATATCTTCCTGGGGGTGCTCTAAAATCATACCTTATAAAGAATAGGAGAAGGAAGCTAGCTTTTAAAGTCGTTGTCCAGCTGGCGATCGATCTTGCTAGAGGGTTGAGCTACCTACACTCACAGAAAATTGTTCACAGAGATGTAAAGACGGAGAACATGCTGCTGGACAAGAGTCGTGTAGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCCAATGACATGACTGGGGAGACCGGCACACTTGGTTACATGGCTCCTGAGGTCCTCAATGGCAACCCGTATAACAGGAAATGTGATGTTTACAGTTTCGGCATCTGTTTATGGGAAATATATTGCTGTGACATGCCATATCCTGACCTTAGTTTCTCCGAAGTGACTTCAGCTGTGGTTCGCCAGAACTTGAGACCTGAGATACCTAGATGTTGTCCAAGTGCCCTTGCAAATGTAATGAAGCGATGCTGGGATGCGAACCCAGACAAGCGGCCGGAGAGGGATGAGGTAGTCACAATGTTGGAGGCGATTGACACAACGAAAGGCGGAGGTATGATCGATCAGTCTCAGGGCTGTCTTTGCCTTCGAATGAAACGAGGACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.23

Weight (kDa)

8.43

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AatII	GACGTC	1 cut(s)	228
AccB1I	GGYRCC	2 cut(s)	182, 191
AciI	CCGC	4 cut(s)	78, 124, 946, 1002
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	947
AcuI	CTGAAG	1 cut(s)	828
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	2 cut(s)	127, 133
AgsI	TTSAA	3 cut(s)	63, 665, 672
AjnI	CCWGG	3 cut(s)	95, 126, 457
AluBI	AGCT	8 cut(s)	154, 299, 505, 509, 529, 558, 668, 848
AluI	AGCT	8 cut(s)	154, 299, 505, 509, 529, 558, 668, 848
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	3 cut(s)	689, 862, 1026
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	947
ApeKI	GCWGC	2 cut(s)	296, 610
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	3 cut(s)	99, 727, 1055
AsuHPI	GGTGA	2 cut(s)	31, 263
AsuII	TTCGAA	1 cut(s)	1042
AsuNHI	GCTAGC	1 cut(s)	505
AvaII	GGWCC	3 cut(s)	99, 727, 1055
AxyI	CCTNAGG	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	901
BanI	GGYRCC	2 cut(s)	182, 191
BauI	CACGAG	2 cut(s)	177, 657
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	308, 597
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	3 cut(s)	97, 128, 459
BcoDI	GTCTC	3 cut(s)	689, 862, 1026
BfaI	CTAG	4 cut(s)	332, 506, 546, 882
BisI	GCNGC	3 cut(s)	297, 611, 947
BlsI	GCNGC	3 cut(s)	298, 612, 948
Bme1390I	CCNGG	3 cut(s)	97, 128, 459
Bme18I	GGWCC	3 cut(s)	99, 727, 1055
BmgT120I	GGNCC	3 cut(s)	99, 727, 1055
BmiI	GGNNCC	4 cut(s)	101, 184, 193, 720
BmrFI	CCNGG	3 cut(s)	97, 128, 459
BmrI	ACTGGG	2 cut(s)	256, 699
BmsI	GCATC	5 cut(s)	39, 216, 786, 911, 919
BmtI	GCTAGC	1 cut(s)	509
BmuI	ACTGGG	2 cut(s)	256, 699
BoxI	GACNNNNGTC	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	1042
BpuEI	CTTGAG	2 cut(s)	291, 886
Bsa29I	ATCGAT	3 cut(s)	141, 537, 1014
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	2 cut(s)	689, 862
BsaJI	CCNNGG	2 cut(s)	202, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 133
Bse118I	RCCGGY	1 cut(s)	698
Bse1I	ACTGG	2 cut(s)	251, 694
Bse21I	CCTNAGG	1 cut(s)	723
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	3 cut(s)	97, 128, 459
BseCI	ATCGAT	3 cut(s)	141, 537, 1014
BseDI	CCNNGG	2 cut(s)	202, 458
BseGI	GGATG	5 cut(s)	30, 108, 337, 934, 964
BseLI	CCNNNNNNNGG	2 cut(s)	127, 133
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	714, 864, 1037
BseNI	ACTGG	2 cut(s)	251, 694
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	901
BseX3I	CGGCCG	1 cut(s)	947
BseXI	GCAGC	2 cut(s)	308, 597
BseYI	CCCAGC	1 cut(s)	924
Bsh1285I	CGRYCG	2 cut(s)	537, 950
BshFI	GGCC	1 cut(s)	949
BshNI	GGYRCC	2 cut(s)	182, 191
BshVI	ATCGAT	3 cut(s)	141, 537, 1014
BsiEI	CGRYCG	2 cut(s)	537, 950
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	2 cut(s)	699, 950
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	127, 133
BsmAI	GTCTC	3 cut(s)	689, 862, 1026
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	949
Bso31I	GGTCTC	2 cut(s)	689, 862
Bsp119I	TTCGAA	1 cut(s)	1042
Bsp1286I	GDGCHC	2 cut(s)	469, 901
Bsp143I	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
BspACI	CCGC	4 cut(s)	78, 124, 946, 1002
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	3 cut(s)	715, 865, 1036
BspDI	ATCGAT	3 cut(s)	141, 537, 1014
BspLI	GGNNCC	4 cut(s)	101, 184, 193, 720
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	1042
BspT107I	GGYRCC	2 cut(s)	182, 191
BspTNI	GGTCTC	2 cut(s)	689, 862
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	251, 694
BssAI	RCCGGY	1 cut(s)	698
BssECI	CCNNGG	2 cut(s)	202, 458
BssMI	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	2 cut(s)	177, 657
Bst2BI	CACGAG	2 cut(s)	177, 657
Bst2UI	CCWGG	3 cut(s)	97, 128, 459
Bst4CI	ACNGT	6 cut(s)	67, 196, 203, 218, 770, 1059
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	1042
BstC8I	GCNNGC	3 cut(s)	419, 507, 531
BstDEI	CTNAG	6 cut(s)	290, 351, 723, 824, 873, 1023
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	5 cut(s)	30, 108, 337, 934, 964
BstKTI	GATC	8 cut(s)	141, 145, 337, 385, 537, 541, 1014, 1018
BstMAI	GTCTC	3 cut(s)	689, 862, 1026
BstMBI	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
BstMCI	CGRYCG	2 cut(s)	537, 950
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 1035
BstNI	CCWGG	3 cut(s)	97, 128, 459
BstNSI	RCATGY	3 cut(s)	421, 610, 811
BstPAI	GACNNNNGTC	1 cut(s)	621
BstSCI	CCNGG	3 cut(s)	95, 126, 457
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	2 cut(s)	308, 597
BstZI	CGGCCG	1 cut(s)	947
Bsu15I	ATCGAT	3 cut(s)	141, 537, 1014
Bsu36I	CCTNAGG	1 cut(s)	723
BsuRI	GGCC	1 cut(s)	949
BsuTUI	ATCGAT	3 cut(s)	141, 537, 1014
BtgI	CCRYGG	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	934
BtsCI	GGATG	5 cut(s)	30, 108, 337, 934, 964
Cac8I	GCNNGC	3 cut(s)	419, 507, 531
Cfr10I	RCCGGY	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	99, 727, 1055
ClaI	ATCGAT	3 cut(s)	141, 537, 1014
CviAII	CATG	5 cut(s)	418, 607, 685, 715, 808
DdeI	CTNAG	6 cut(s)	290, 351, 723, 824, 873, 1023
DpnI	GATC	8 cut(s)	140, 144, 336, 384, 536, 540, 1013, 1017
DpnII	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	947
EagI	CGGCCG	1 cut(s)	947
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	1017
EclXI	CGGCCG	1 cut(s)	947
Eco31I	GGTCTC	2 cut(s)	689, 862
Eco47I	GGWCC	3 cut(s)	99, 727, 1055
Eco52I	CGGCCG	1 cut(s)	947
Eco57I	CTGAAG	1 cut(s)	828
Eco81I	CCTNAGG	1 cut(s)	723
EcoO109I	RGGNCCY	2 cut(s)	99, 727
EcoRII	CCWGG	3 cut(s)	95, 126, 457
FaeI	CATG	5 cut(s)	421, 610, 688, 718, 811
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	5 cut(s)	417, 606, 684, 714, 807
Fnu4HI	GCNGC	3 cut(s)	297, 611, 947
FokI	GGATG	5 cut(s)	17, 95, 324, 941, 971
Fsp4HI	GCNGC	3 cut(s)	297, 611, 947
FspBI	CTAG	4 cut(s)	332, 506, 546, 882
GluI	GCNGC	3 cut(s)	297, 611, 947
GsaI	CCCAGC	1 cut(s)	928
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	949
HapII	CCGG	2 cut(s)	699, 950
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	421, 610, 688, 718, 811
HindIII	AAGCTT	1 cut(s)	666
HinfI	GANTC	2 cut(s)	272, 622
HpaII	CCGG	2 cut(s)	699, 950
HphI	GGTGA	2 cut(s)	31, 263
Hpy166II	GTNNAC	3 cut(s)	199, 583, 766
Hpy188I	TCNGA	3 cut(s)	277, 382, 835
Hpy188III	TCNNGA	5 cut(s)	221, 308, 634, 722, 818
Hpy8I	GTNNAC	3 cut(s)	199, 583, 766
Hpy99I	CGWCG	2 cut(s)	218, 230
HpyAV	CCTTC	3 cut(s)	196, 492, 1049
HpyCH4III	ACNGT	6 cut(s)	67, 196, 203, 218, 770, 1059
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	1 cut(s)	905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 1035
HpyF3I	CTNAG	6 cut(s)	290, 351, 723, 824, 873, 1023
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	5 cut(s)	421, 610, 688, 718, 811
Kzo9I	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
LmnI	GCTCC	2 cut(s)	159, 724
Lsp1109I	GCAGC	2 cut(s)	308, 597
LweI	GCATC	5 cut(s)	39, 216, 786, 911, 919
MaeI	CTAG	4 cut(s)	332, 506, 546, 882
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	6 cut(s)	260, 346, 710, 803, 838, 967
MalI	GATC	8 cut(s)	140, 144, 336, 384, 536, 540, 1013, 1017
MboI	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
MboII	GAAGA	2 cut(s)	266, 446
MhlI	GDGCHC	2 cut(s)	469, 901
MluCI	AATT	4 cut(s)	19, 58, 411, 576
MlyI	GAGTC	2 cut(s)	266, 631
MmeI	TCCRAC	2 cut(s)	48, 957
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	234, 513
MslI	CAYNNNNRTG	2 cut(s)	342, 588
MspA1I	CMGCKG	2 cut(s)	529, 848
MspI	CCGG	2 cut(s)	699, 950
MspR9I	CCNGG	3 cut(s)	97, 128, 459
MvaI	CCWGG	3 cut(s)	97, 128, 459
MwoI	GCNNNNNNNGC	2 cut(s)	189, 1035
NdeII	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	5 cut(s)	421, 610, 688, 718, 811
NlaIV	GGNNCC	4 cut(s)	101, 184, 193, 720
NmuCI	GTSAC	4 cut(s)	260, 803, 838, 967
NspI	RCATGY	3 cut(s)	421, 610, 811
NspV	TTCGAA	1 cut(s)	1042
PaeI	GCATGC	1 cut(s)	421
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 1048
PdmI	GAANNNNTTC	1 cut(s)	453
PfoI	TCCNGGA	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	298, 612, 948
Ple19I	CGATCG	1 cut(s)	537
PleI	GAGTC	2 cut(s)	266, 630
PpsI	GAGTC	2 cut(s)	266, 630
PpuMI	RGGWCCY	2 cut(s)	99, 727
PshAI	GACNNNNGTC	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	485
Psp5II	RGGWCCY	2 cut(s)	99, 727
Psp6I	CCWGG	3 cut(s)	95, 126, 457
PspFI	CCCAGC	1 cut(s)	924
PspGI	CCWGG	3 cut(s)	95, 126, 457
PspN4I	GGNNCC	4 cut(s)	101, 184, 193, 720
PspPI	GGNCC	3 cut(s)	99, 727, 1055
PspPPI	RGGWCCY	2 cut(s)	99, 727
PvuI	CGATCG	1 cut(s)	537
PvuII	CAGCTG	2 cut(s)	529, 848
RseI	CAYNNNNRTG	2 cut(s)	342, 588
SaqAI	TTAA	2 cut(s)	234, 513
SatI	GCNGC	3 cut(s)	297, 611, 947
Sau3AI	GATC	8 cut(s)	138, 142, 334, 382, 534, 538, 1011, 1015
Sau96I	GGNCC	3 cut(s)	99, 727, 1055
SchI	GAGTC	2 cut(s)	266, 631
ScrFI	CCNGG	3 cut(s)	97, 128, 459
SduI	GDGCHC	2 cut(s)	469, 901
SfaNI	GCATC	5 cut(s)	39, 216, 786, 911, 919
SfuI	TTCGAA	1 cut(s)	1042
SinI	GGWCC	3 cut(s)	99, 727, 1055
SmiMI	CAYNNNNRTG	2 cut(s)	342, 588
SmlI	CTYRAG	2 cut(s)	306, 865
SmoI	CTYRAG	2 cut(s)	306, 865
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	4 cut(s)	19, 58, 411, 576
SsiI	CCGC	4 cut(s)	78, 124, 946, 1002
SspMI	CTAG	4 cut(s)	332, 506, 546, 882
StyD4I	CCNGG	3 cut(s)	95, 126, 457
TaaI	ACNGT	6 cut(s)	67, 196, 203, 218, 770, 1059
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	5 cut(s)	141, 385, 537, 1014, 1042
TasI	AATT	4 cut(s)	19, 58, 411, 576
TauI	GCSGC	1 cut(s)	949
Tru1I	TTAA	2 cut(s)	234, 513
Tru9I	TTAA	2 cut(s)	234, 513
TseFI	GTSAC	4 cut(s)	260, 803, 838, 967
TseI	GCWGC	2 cut(s)	296, 610
Tsp45I	GTSAC	4 cut(s)	260, 803, 838, 967
TspDTI	ATGAA	3 cut(s)	366, 929, 1061
TspGWI	ACGGA	2 cut(s)	157, 614
VpaK11BI	GGWCC	3 cut(s)	99, 727, 1055
XceI	RCATGY	3 cut(s)	421, 610, 811
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	4 cut(s)	332, 506, 546, 882
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.