Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003110

Physical Location & Seq

Genomic Coordinates Forward (+)

20216281 .. 20217445

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCAACTAATATCTGTTGTGTCGTTGTGGAATATCTTCCTGGGGGTGCTCTAAAATCGTACCTCATAAAGAATAGGAGAAGGAAGTTAGCTTTTAAAGTCGTTGTCCAGCTGGCAATCGATCTTGCTAGAGGGTTGAGCTACCTACACTCACAGAAGATTGTCCACAGAGATGTAAAGACAGAGAACATGCTTCTGGACAAGACTCGTGCGGTCAAGATTGCTGATTTTGGTGTTGCTCGTGTTGAAGCTTCAAATCCCAATGACATGACTGGGGAGACTGGCACACTAGGTTACATGGCTCCTGAGGTCCTCAATGGCAACCCGTACAACAGGAAATGCGATGTGTACAGTTTCGGCATCTGTTTATGGGAAATATATTGCTGTGATATGCCATATCCCGACCTTAGTTTCTCGGAAGTGACTTCAGCTGTGGTTCGCCAGAATTTGAGACCTGAGATACCAAGATGTTGTCCAAGTGCGCTTGCAAACGTAATGAAGCGATGCTGGGATGCGAACCCAGACAAGCGGCAGGAGATGGATGAGGTAGTCACAATGTTGGAGGCGATCGACACATCGAAAGGCGGAGGTATGATCCCTCAAGATCAGTCTCAGGGCTGTCTTTGCTTTCGAAAGAAAAGAGGACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.2

Weight (kDa)

8.61

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50000 AT5G50000
fragaria_vesca	FvH4_4g34550 FvH4_5g05170 FvH4_7g27090 FvH4_7g27110
malus_domestica	MD06G1175900.v1.1 MD06G1176700.v1.1 MD14G1182800.v1.1 MD14G1182900.v1.1 MD16G1091900.v1.1 MD17G1183600.v1.1
prunus_persica	Prupe.1G254400_v2.0.a1 Prupe.1G254500_v2.0.a1 Prupe.5G175400_v2.0.a1 Prupe.8G000900_v2.0.a1
pyrus_communis	pycom06g15690 pycom14g15180 pycom16g07840
rosa_chinensis	RchiOBHm_Chr4g0443931 RchiOBHm_Chr7g0193791
rosa_laevigata	RLG00000004245 RLG00000005876
rosa_multiflora	Rmu_sc0001436.1_g000027 Rmu_sc0011390.1_g000005
rosa_roxburghii	Rroxscaffold_3G00261830
rosa_rugosa	Rorug04G0348300 Rorug07G0011900
rosa_samantha	Rh4AG408900 Rh4BG420000 Rh4CG434000 Rh4DG415000 Rh7BG138900 Rh7CG142500 Rh7DG140100
rosa_wichuraiana	Rw4G035120 Rw7G011810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	212, 529, 585
AclWI	GGATC	1 cut(s)	589
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	3 cut(s)	62, 329, 350
AgsI	TTSAA	2 cut(s)	248, 255
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	92, 112, 141, 251, 431
AluI	AGCT	5 cut(s)	92, 112, 141, 251, 431
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	3 cut(s)	272, 445, 615
AlwI	GGATC	1 cut(s)	589
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	310, 644
AsuII	TTCGAA	1 cut(s)	631
AvaII	GGWCC	2 cut(s)	310, 644
AxyI	CCTNAGG	1 cut(s)	306
BauI	CACGAG	2 cut(s)	207, 240
Bbv12I	GWGCWC	1 cut(s)	52
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	272, 445, 615
BfaI	CTAG	2 cut(s)	129, 290
BisI	GCNGC	1 cut(s)	530
BlsI	GCNGC	1 cut(s)	531
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	2 cut(s)	310, 644
BmgT120I	GGNCC	2 cut(s)	310, 644
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	282
BmsI	GCATC	3 cut(s)	369, 494, 502
BmuI	ACTGGG	1 cut(s)	282
Bpu14I	TTCGAA	1 cut(s)	631
BpuEI	CTTGAG	1 cut(s)	585
Bsa29I	ATCGAT	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	277, 286
Bse21I	CCTNAGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	517, 547
BseMII	CTCAG	3 cut(s)	297, 447, 626
BseNI	ACTGG	2 cut(s)	277, 286
BseYI	CCCAGC	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	570
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	272, 445, 615
Bso31I	GGTCTC	1 cut(s)	445
Bsp119I	TTCGAA	1 cut(s)	631
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	121, 567, 594, 604
BspACI	CCGC	3 cut(s)	212, 529, 585
BspCNI	CTCAG	3 cut(s)	298, 448, 625
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	589
BspT104I	TTCGAA	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	277, 286
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	4 cut(s)	121, 567, 594, 604
BssSI	CACGAG	2 cut(s)	207, 240
Bst2BI	CACGAG	2 cut(s)	207, 240
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	353, 648
BstAUI	TGTACA	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	631
BstC8I	GCNNGC	2 cut(s)	114, 486
BstDEI	CTNAG	4 cut(s)	306, 407, 456, 612
BstF5I	GGATG	2 cut(s)	517, 547
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	4 cut(s)	124, 570, 597, 607
BstMAI	GTCTC	3 cut(s)	272, 445, 615
BstMBI	GATC	4 cut(s)	121, 567, 594, 604
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	1 cut(s)	624
BstNI	CCWGG	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	120
BtgZI	GCGATG	2 cut(s)	357, 517
BtsCI	GGATG	2 cut(s)	517, 547
Cac8I	GCNNGC	2 cut(s)	114, 486
CfoI	GCGC	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	310, 644
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	61, 328, 349
CviAII	CATG	3 cut(s)	190, 268, 298
CviJI	RGCY	7 cut(s)	92, 112, 141, 251, 302, 431, 618
CviKI_1	RGCY	7 cut(s)	92, 112, 141, 251, 302, 431, 618
CviQI	GTAC	3 cut(s)	61, 328, 349
DdeI	CTNAG	4 cut(s)	306, 407, 456, 612
DpnI	GATC	4 cut(s)	123, 569, 596, 606
DpnII	GATC	4 cut(s)	121, 567, 594, 604
DraI	TTTAAA	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	310, 644
Eco57I	CTGAAG	1 cut(s)	411
Eco81I	CCTNAGG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	193, 271, 301
FaiI	YATR	9 cut(s)	68, 191, 269, 299, 370, 379, 392, 397, 593
FatI	CATG	3 cut(s)	189, 267, 297
Fnu4HI	GCNGC	1 cut(s)	530
FokI	GGATG	2 cut(s)	524, 554
Fsp4HI	GCNGC	1 cut(s)	530
FspBI	CTAG	2 cut(s)	129, 290
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	1 cut(s)	530
GsaI	CCCAGC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	193, 271, 301
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	166, 349
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	5 cut(s)	197, 217, 305, 401, 602
Hpy8I	GTNNAC	2 cut(s)	166, 349
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	353, 648
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	1 cut(s)	488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	624
HpyF3I	CTNAG	4 cut(s)	306, 407, 456, 612
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	193, 271, 301
HspAI	GCGC	1 cut(s)	482
Kzo9I	GATC	4 cut(s)	121, 567, 594, 604
LmnI	GCTCC	1 cut(s)	307
LweI	GCATC	3 cut(s)	369, 494, 502
MaeI	CTAG	2 cut(s)	129, 290
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	293, 421, 550
MalI	GATC	4 cut(s)	123, 569, 596, 606
MboI	GATC	4 cut(s)	121, 567, 594, 604
MboII	GAAGA	2 cut(s)	29, 169
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	1 cut(s)	445
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	9 cut(s)	74, 125, 301, 323, 538, 556, 581, 609, 635
MroXI	GAANNNNTTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	112, 431
MspR9I	CCNGG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	624
NdeII	GATC	4 cut(s)	121, 567, 594, 604
NlaIII	CATG	3 cut(s)	193, 271, 301
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	421, 550
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	36
PkrI	GCNGC	1 cut(s)	531
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	310
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	310, 644
PspPPI	RGGWCCY	1 cut(s)	310
PvuI	CGATCG	1 cut(s)	570
PvuII	CAGCTG	2 cut(s)	112, 431
RsaI	GTAC	3 cut(s)	62, 329, 350
RsaNI	GTAC	3 cut(s)	61, 328, 349
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	1 cut(s)	530
Sau3AI	GATC	4 cut(s)	121, 567, 594, 604
Sau96I	GGNCC	2 cut(s)	310, 644
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	52
SfaNI	GCATC	3 cut(s)	369, 494, 502
SfuI	TTCGAA	1 cut(s)	631
SinI	GGWCC	2 cut(s)	310, 644
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	600
SmoI	CTYRAG	1 cut(s)	600
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	3 cut(s)	212, 529, 585
SspMI	CTAG	2 cut(s)	129, 290
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	353, 648
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	4 cut(s)	120, 570, 578, 631
TasI	AATT	1 cut(s)	445
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	532
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	421, 550
Tsp45I	GTSAC	2 cut(s)	421, 550
TspDTI	ATGAA	1 cut(s)	512
VpaK11BI	GGWCC	2 cut(s)	310, 644
XapI	RAATTY	1 cut(s)	445
XceI	RCATGY	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	36
XspI	CTAG	2 cut(s)	129, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.