pycom06g15660

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0007090
Physical Location & Seq
Forward (+)
20166048 .. 20166404
357 bp
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UTR
Exon/CDS
Intron
pycom06g15660.1

Sequence Viewer

Length: 357 bp
ATGCAAAATCAGCTTGATACTACATCATCCTATATAAAGCAACTGAGAGAGAGAATAGAGAATTTGAAGGAGCGGAAGGAGAAAGCAATGAGGTCACAATTAGGCAGTTCTAATTCTGACATTGGTGCTATTGCTGCCAAAAATGCTGTAATGACGGGATCAAGATTACCAGTTCTTGTATTAAGAGAATCGGGTTCCTGCATAGAAGTTATGCTGATTAGTGGGTTGAATAAGAACTTCATGTTTTATGAAGTCATCCGTGTTCTTCAGGAACAAGGAGCTGAAGTTGTCAGCGCTAGCTTTTCCACTGTAGGTGATAAAGTTTTCCACTCGGTGCATGCTCAGGTACTAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

119

Amino Acids

13.09

Weight (kDa)

9.2

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 166
AcsI RAATTY 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 251, 303
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 348
AfeI AGCGCT 1 cut(s) 295
AgsI TTSAA 2 cut(s) 67, 229
AluBI AGCT 3 cut(s) 13, 281, 300
AluI AGCT 3 cut(s) 13, 281, 300
AlwI GGATC 1 cut(s) 166
Aor51HI AGCGCT 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 61
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 1 cut(s) 326
AsuNHI GCTAGC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 121
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 297
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 300
Bpu10I CCTNAGC 1 cut(s) 342
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 2 cut(s) 26, 255
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 35, 356
BseNI ACTGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 2 cut(s) 36, 355
BspLI GGNNCC 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 166
BsrBI CCGCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 170
BssMI GATC 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 298, 339
BstDEI CTNAG 2 cut(s) 44, 342
BstF5I GGATG 2 cut(s) 26, 255
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstMWI GCNNNNNNNGC 3 cut(s) 10, 134, 143
BstNSI RCATGY 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 26, 255
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 298, 339
CfoI GCGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 347
CviAII CATG 2 cut(s) 241, 338
CviJI RGCY 3 cut(s) 13, 281, 300
CviKI_1 RGCY 3 cut(s) 13, 281, 300
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 44, 342
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
DraIII CACNNNGTG 1 cut(s) 334
Eco47III AGCGCT 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 251, 303
FaeI CATG 2 cut(s) 244, 341
FaiI YATR 7 cut(s) 33, 35, 203, 212, 242, 249, 339
FatI CATG 2 cut(s) 240, 337
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 2 cut(s) 13, 242
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 297
HhaI GCGC 1 cut(s) 296
Hin1II CATG 2 cut(s) 244, 341
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 188
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 2 cut(s) 162, 269
HpyAV CCTTC 2 cut(s) 61, 70
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 3 cut(s) 4, 201, 337
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 134, 143
HpyF3I CTNAG 2 cut(s) 44, 342
Hsp92II CATG 2 cut(s) 244, 341
HspAI GCGC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 70, 278
LpnPI CCDG 4 cut(s) 183, 211, 254, 329
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 93
MalI GATC 1 cut(s) 160
MbiI CCGCTC 1 cut(s) 73
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 257
MluCI AATT 3 cut(s) 61, 98, 112
MnlI CCTC 1 cut(s) 84
MseI TTAA 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 10, 134, 143
NdeII GATC 1 cut(s) 158
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 2 cut(s) 244, 341
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 93
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 158
SetI ASST 6 cut(s) 15, 95, 283, 302, 316, 348
SfcI CTRYAG 1 cut(s) 309
SphI GCATGC 1 cut(s) 341
Sse9I AATT 3 cut(s) 61, 98, 112
SsiI CCGC 1 cut(s) 73
SspMI CTAG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 310
TasI AATT 3 cut(s) 61, 98, 112
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 229, 264
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 313
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 341
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.