Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007090

Physical Location & Seq

Genomic Coordinates Forward (+)

957319 .. 958707

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0011800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTTCAAAGTGTCTGTTTCTGATGGTGTTAGGTTTAGTGGGCCTTGTGGGCTCTGCGGCGGAGTTTTCCGGAGGCGGACTAGCAGGGCTGGTCGATGGTGGCGGTGATGGTGATCCAAGTGATTCAATGCCATGCGTGAAGAAACTGATTCCGTGCCAACCTTATTTGCATGCACCGGAGAAGGTGCCGGTATCGTGCTGTTTGCCGTTGAAGCAGATGGTTTCCGACGACACGAAATGCCTGTGTGGACTGTTTAACAATGTTGATATGTTGAAGAAGCTTAACGTTACTCAGGATGAGGCCTTGAAGCTTCCCAAGGCTTGTGGTGCCAATGCTGACATTTCTATCTGCAAAAAAGATTCAACATCACCACCCAAATCACCAGAAACTCCATCAGCTTCGAACTCTAGTTCTCCTACGAAAAATGCAGCTCATTCACCTTCTCATTTCAGTGGTTCTGGATTTGCTGCCTTCTTCATGGCCCTAATCATTTCAGCAGCAGCAGCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

171

Amino Acids

17.51

Weight (kDa)

6.79

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	45 - 118	3.8e-14	Probable lipid transfer
Tryp_alpha_amyl	PF00234	47 - 114	4.3e-06	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10585 AT1G10585 AT1G10586 AT1G10586
fragaria_vesca	FvH4_5g05180 FvH4_5g05180
malus_domestica	MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1
prunus_persica	Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1
pyrus_communis	pycom06g15660 pycom14g15170
rosa_chinensis	RchiOBHm_Chr7g0193761
rosa_laevigata	RLG00000004247
rosa_multiflora	Rmu_sc0001436.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261860
rosa_rugosa	Rorug07G0011700 Rorug07G0011800 Rorug07G0011900
rosa_samantha	Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800
rosa_wichuraiana	Rw7G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	187, 329
AccIII	TCCGGA	1 cut(s)	71
AciI	CCGC	4 cut(s)	59, 62, 78, 105
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	1 cut(s)	110
AgsI	TTSAA	6 cut(s)	9, 129, 214, 277, 310, 366
AluBI	AGCT	4 cut(s)	283, 313, 401, 434
AluI	AGCT	4 cut(s)	283, 313, 401, 434
AlwI	GGATC	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	3 cut(s)	43, 303, 483
ApeKI	GCWGC	5 cut(s)	431, 470, 500, 503, 506
AspS9I	GGNCC	2 cut(s)	43, 484
AsuHPI	GGTGA	5 cut(s)	119, 125, 363, 375, 432
AsuII	TTCGAA	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	187, 329
BanII	GRGCYC	1 cut(s)	56
BbvI	GCAGC	3 cut(s)	443, 457, 512
BccI	CCATC	5 cut(s)	19, 92, 104, 214, 403
BceAI	ACGGC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	83, 411
BglI	GCCNNNNNGGC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	60, 432, 471, 501, 504, 507
BlsI	GCNGC	6 cut(s)	61, 433, 472, 502, 505, 508
BmgT120I	GGNCC	2 cut(s)	43, 484
BmiI	GGNNCC	2 cut(s)	189, 331
Bpu14I	TTCGAA	1 cut(s)	404
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	2 cut(s)	71, 178
Bse118I	RCCGGY	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	443, 457, 512
BshFI	GGCC	3 cut(s)	45, 305, 485
BshNI	GGYRCC	2 cut(s)	187, 329
BsiSI	CCGG	3 cut(s)	72, 179, 191
BsnI	GGCC	3 cut(s)	45, 305, 485
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	4 cut(s)	59, 62, 78, 105
BspANI	GGCC	3 cut(s)	45, 305, 485
BspCNI	CTCAG	1 cut(s)	307
BspEI	TCCGGA	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	189, 331
BspPI	GGATC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	2 cut(s)	187, 329
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 214, 329, 506
BstNSI	RCATGY	1 cut(s)	176
BstV1I	GCAGC	3 cut(s)	443, 457, 512
BsuRI	GGCC	3 cut(s)	45, 305, 485
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	43, 484
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	3 cut(s)	135, 173, 481
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EciI	GGCGGA	2 cut(s)	77, 93
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	138, 176, 484
FaiI	YATR	4 cut(s)	136, 174, 272, 482
FatI	CATG	3 cut(s)	134, 172, 480
Fnu4HI	GCNGC	6 cut(s)	60, 432, 471, 501, 504, 507
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	6 cut(s)	60, 432, 471, 501, 504, 507
FspBI	CTAG	2 cut(s)	83, 411
GluI	GCNGC	6 cut(s)	60, 432, 471, 501, 504, 507
HaeIII	GGCC	3 cut(s)	45, 305, 485
HapII	CCGG	3 cut(s)	72, 179, 191
Hin1II	CATG	3 cut(s)	138, 176, 484
HindIII	AAGCTT	2 cut(s)	281, 311
HinfI	GANTC	3 cut(s)	125, 151, 362
HpaII	CCGG	3 cut(s)	72, 179, 191
HphI	GGTGA	5 cut(s)	119, 125, 363, 375, 432
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	24, 229
Hpy188III	TCNNGA	3 cut(s)	72, 296, 462
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	178, 453, 484
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	172, 176, 354, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 214, 329, 506
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	3 cut(s)	138, 176, 484
Kpn2I	TCCGGA	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	72, 77, 85, 192, 204, 257, 281, 399, 447
Lsp1109I	GCAGC	3 cut(s)	443, 457, 512
MaeI	CTAG	2 cut(s)	83, 411
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	3 cut(s)	154, 289, 469
MhlI	GDGCHC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	68, 295
MroI	TCCGGA	1 cut(s)	71
MseI	TTAA	2 cut(s)	258, 285
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	3 cut(s)	72, 179, 191
MwoI	GCNNNNNNNGC	4 cut(s)	51, 214, 329, 506
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	138, 176, 484
NlaIV	GGNNCC	2 cut(s)	189, 331
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	404
PaeI	GCATGC	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	125, 151, 362
PkrI	GCNGC	6 cut(s)	61, 433, 472, 502, 505, 508
Psp1406I	AACGTT	1 cut(s)	288
PspN4I	GGNNCC	2 cut(s)	189, 331
PspPI	GGNCC	2 cut(s)	43, 484
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	258, 285
SatI	GCNGC	6 cut(s)	60, 432, 471, 501, 504, 507
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	2 cut(s)	43, 484
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	9 cut(s)	37, 166, 189, 285, 291, 315, 403, 436, 445
SfuI	TTCGAA	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	453
SphI	GCATGC	1 cut(s)	176
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	4 cut(s)	59, 62, 78, 105
SspMI	CTAG	2 cut(s)	83, 411
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	96, 404
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	125, 151, 362
Tru1I	TTAA	2 cut(s)	258, 285
Tru9I	TTAA	2 cut(s)	258, 285
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	5 cut(s)	431, 470, 500, 503, 506
TspDTI	ATGAA	1 cut(s)	469
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	460
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	2 cut(s)	83, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.