Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007090

Physical Location & Seq

Genomic Coordinates Reverse (-)

3496911 .. 3499439

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10586.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAAAGAGCGAGAGAAATAGGAGAAGGAAGCGCATCGTCATTACGGGAACAACGAAACCTCAGAGAGAAAGAACGACGAATGCGCATGAAACATCTCTTCTCCATACTCTCTTCTCATGTTTCTCCCACTCGTAGGTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAACTGAAAGAGAAGGTAAACTATTTGAATGAGATGAAAAGGAGAATGTTAGGAGGAGAAGTCAAAAATCGCTCTGAAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACTGGATTCGATCATAGAAATGAATCTGGTTATGGATCTAAACATGAAAGGAGTAATGTTACACAAGCTTGTGAGTGTTTTTGAAGAAGAAGGAGCTCAAGTGATGAGTGCTAATCTTCAGAACTTGAATGATAGGACCTTTTATACAATCATAGCCCAGGCTATCATATGTCGGATCGGGATTGATCCATCAAGGATAGAAGAGAGATTAAGGGATATAATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

174

Amino Acids

20.08

Weight (kDa)

9.71

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	16 - 64	3.5e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10585 AT1G10585 AT1G10586 AT1G10586
fragaria_vesca	FvH4_5g05180 FvH4_5g05180
malus_domestica	MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1
prunus_persica	Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1
pyrus_communis	pycom06g15660 pycom14g15170
rosa_chinensis	RchiOBHm_Chr7g0193761
rosa_laevigata	RLG00000004247
rosa_multiflora	Rmu_sc0001436.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261860
rosa_rugosa	Rorug07G0011700 Rorug07G0011800 Rorug07G0011900
rosa_samantha	Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800
rosa_wichuraiana	Rw7G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	86
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	4 cut(s)	175, 339, 476, 479
AcuI	CTGAAG	2 cut(s)	279, 398
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	211, 380, 424
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	2 cut(s)	364, 392
AluI	AGCT	2 cut(s)	364, 392
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	4 cut(s)	175, 339, 476, 479
AspLEI	GCGC	2 cut(s)	35, 87
AspS9I	GGNCC	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	394
BccI	CCATC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	453
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 258, 381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	143, 303
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	2 cut(s)	76, 298
BseNI	ACTGG	2 cut(s)	143, 303
BseRI	GAGGAG	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	394
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	273
BsmBI	CGTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
BspACI	CCGC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	75, 297
BspHI	TCATGA	1 cut(s)	521
BspPI	GGATC	4 cut(s)	175, 339, 476, 479
BsrI	ACTGG	2 cut(s)	143, 303
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
Bst2UI	CCWGG	1 cut(s)	455
Bst6I	CTCTTC	4 cut(s)	104, 118, 276, 492
BstDEI	CTNAG	2 cut(s)	62, 284
BstHHI	GCGC	2 cut(s)	35, 87
BstKTI	GATC	6 cut(s)	163, 183, 309, 334, 474, 484
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	150, 296
CciI	TCATGA	1 cut(s)	521
CfoI	GCGC	2 cut(s)	35, 87
Cfr13I	GGNCC	1 cut(s)	432
CviAII	CATG	5 cut(s)	88, 119, 178, 340, 522
CviJI	RGCY	4 cut(s)	364, 392, 452, 458
CviKI_1	RGCY	4 cut(s)	364, 392, 452, 458
DdeI	CTNAG	2 cut(s)	62, 284
DpnI	GATC	6 cut(s)	162, 182, 308, 333, 473, 483
DpnII	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
Eam1104I	CTCTTC	4 cut(s)	104, 118, 276, 492
EarI	CTCTTC	4 cut(s)	104, 118, 276, 492
Ecl136II	GAGCTC	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	2 cut(s)	279, 398
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	394
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	5 cut(s)	91, 122, 181, 343, 525
FatI	CATG	5 cut(s)	87, 118, 177, 339, 521
FauNDI	CATATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	394
FspAI	RTGCGCAY	1 cut(s)	86
FspI	TGCGCA	1 cut(s)	86
GlaI	GCGC	2 cut(s)	34, 86
HhaI	GCGC	2 cut(s)	35, 87
Hin1II	CATG	5 cut(s)	91, 122, 181, 343, 525
Hin6I	GCGC	2 cut(s)	33, 85
HinP1I	GCGC	2 cut(s)	33, 85
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	302, 319
Hpy166II	GTNNAC	2 cut(s)	202, 296
Hpy188I	TCNGA	4 cut(s)	65, 259, 417, 471
Hpy188III	TCNNGA	2 cut(s)	475, 522
Hpy8I	GTNNAC	2 cut(s)	202, 296
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	4 cut(s)	20, 190, 254, 380
HpyF3I	CTNAG	2 cut(s)	62, 284
Hsp92II	CATG	5 cut(s)	91, 122, 181, 343, 525
HspAI	GCGC	2 cut(s)	33, 85
Kzo9I	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	5 cut(s)	156, 284, 308, 440, 467
LweI	GCATC	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	6 cut(s)	162, 182, 308, 333, 473, 483
MboI	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
MboII	GAAGA	7 cut(s)	91, 105, 263, 392, 395, 404, 509
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	394
MmeI	TCCRAC	2 cut(s)	208, 449
MnlI	CCTC	3 cut(s)	71, 159, 230
MseI	TTAA	1 cut(s)	506
MslI	CAYNNNNRTG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	455
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	464
NdeII	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
NlaIII	CATG	5 cut(s)	91, 122, 181, 343, 525
NsbI	TGCGCA	1 cut(s)	86
PagI	TCATGA	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	302, 319
PpuMI	RGGWCCY	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	432
PspPPI	RGGWCCY	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	1 cut(s)	506
Sau3AI	GATC	6 cut(s)	160, 180, 306, 331, 471, 481
Sau96I	GGNCC	1 cut(s)	432
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	6 cut(s)	63, 140, 201, 366, 394, 437
SfaNI	GCATC	1 cut(s)	44
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SsiI	CCGC	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	453
TaqI	TCGA	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	302, 319
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	2 cut(s)	150, 303
TspDTI	ATGAA	4 cut(s)	104, 233, 332, 356
TspRI	CASTG	2 cut(s)	150, 303
VpaK11BI	GGWCC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.