Rorug07G0011700

helix loop helix domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007090
Physical Location & Seq
Forward (+)
954045 .. 956669
2625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0011700.1

Sequence Viewer

Length: 1065 bp
ATGTCGGCGTTCTTGCACCAGCGCCCACTCCACAACCCACTCTCAGATCCACACCCACTGTCCCCACCTTCCTCAAATCCCAGAAAACCCTTCTCATCTTTCAGCCCCATAACCCTTTTAGTCCTTCTCGGCCTTGTAATAATTCTGGGTGTGTTTCTGCCATGGACGAGTATGCAAGAGGGTTTGTTCTCGATCACTAACAGGTCCTCACTCAAATGGAGGAGTTACACATTGGCCCAAGCTGCGGCCTTTGTGGCCCAAAATGGGACCTTGATTGTTTGTGCGGTGAGTGAGCCTTACTTGCCGTTTTTGAACAACTGGTTGATTAGCATTGCGAGGCAGAAGCACCAGGACAAGGTGCTTGTGATTGCTGAGGACTATGGGACGCTTTATAAGGTCAATGAGAGGTGGCCGGGCCACGCCGTGCTTATTCCGCCGGCTCTTGATGCTCAGGCTGCCCATAAGTTTGGTTCTCAGGGATTCTTCAACTTTACTTCCAGAAGGCCGCGCCACCTCTTAAACATTTTGGAGCTTGGATACAGTGTGATGTACAATGACGTTGATATGGTGTGGTTGGCTGATCCCTTTCCCTATTTGGTAGGGAATCATGATGTGTACTTCACAGATGATATGACTCCAGTCAAACCTCTGAACCATTCTCATGATTTGCCACCTCCAGGTAAGAAAGGACGCACTTACATATGCAGCTGTATGATCTTCTTACGTCCTACAAGCGGTGCAAAATTAATTATGAAGAAGTGGATAGAGGAAATGCAGCAGGAGCCCTGGTCCAGAGCAAAGAAAGCAAATGATCAACCTGCTTTTAACTGGGCATTAGACAAAAATGCTGCACAGGCGGATCTCTACTTGCTGTCGCAAGCAGCATTCCCAACTGGAGGATTATACTTCAAGAACAAAACATGGGTAAAGGAAACTAATGGGATGCATGTTATAATCCACAACAATTATATTTTAGGTTTTGAGAAGAAGATCAGGCGCTTCCATGATTATGGTCTCTGGTTGGTAGATGATCATGCCCATGAGTCTCCCCTCGGGAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

354

Amino Acids

40.29

Weight (kDa)

9.17

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleotid_trans PF03407 116 - 334 3.3e-45 Nucleotide-diphospho-sugar transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 393, 953
Acc36I ACCTGC 1 cut(s) 826
AccII CGCG 1 cut(s) 508
AciI CCGC 6 cut(s) 245, 284, 434, 506, 735, 857
AclWI GGATC 3 cut(s) 41, 575, 867
AcoI YGGCCR 1 cut(s) 410
AdeI CACNNNGTG 1 cut(s) 424
AfaI GTAC 2 cut(s) 551, 617
AfiI CCNNNNNNNGG 6 cut(s) 244, 264, 355, 677, 734, 896
AgsI TTSAA 3 cut(s) 313, 487, 910
AjnI CCWGG 3 cut(s) 348, 676, 785
AluBI AGCT 3 cut(s) 242, 532, 708
AluI AGCT 3 cut(s) 242, 532, 708
Alw26I GTCTC 2 cut(s) 1019, 1050
AlwI GGATC 3 cut(s) 41, 575, 867
Ama87I CYCGRG 1 cut(s) 1052
AoxI GGCC 7 cut(s) 130, 234, 246, 255, 410, 415, 503
ApeKI GCWGC 6 cut(s) 242, 455, 705, 775, 848, 881
AseI ATTAAT 1 cut(s) 746
AspLEI GCGC 3 cut(s) 24, 510, 999
AspS9I GGNCC 6 cut(s) 204, 235, 256, 267, 415, 789
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 1052
AvaII GGWCC 3 cut(s) 204, 267, 789
BanII GRGCYC 1 cut(s) 786
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 6 cut(s) 229, 442, 717, 787, 835, 893
BceAI ACGGC 2 cut(s) 289, 407
BciT130I CCWGG 3 cut(s) 350, 678, 787
BciVI GTATCC 1 cut(s) 530
BclI TGATCA 2 cut(s) 811, 1030
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 1019, 1050
BfoI RGCGCY 2 cut(s) 25, 1000
BfuAI ACCTGC 1 cut(s) 826
BfuI GTATCC 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 8 cut(s) 243, 246, 456, 506, 706, 776, 849, 882
BlsI GCNGC 8 cut(s) 244, 247, 457, 507, 707, 777, 850, 883
Bme1390I CCNGG 4 cut(s) 350, 414, 678, 787
Bme18I GGWCC 3 cut(s) 204, 267, 789
BmeT110I CYCGRG 1 cut(s) 1052
BmgT120I GGNCC 6 cut(s) 204, 235, 256, 267, 415, 789
BmiI GGNNCC 2 cut(s) 268, 783
BmrFI CCNGG 4 cut(s) 350, 414, 678, 787
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 436, 933
BmuI ACTGGG 1 cut(s) 838
BoxI GACNNNNGTC 1 cut(s) 638
BpmI CTGGAG 3 cut(s) 621, 660, 915
Bpu10I CCTNAGC 2 cut(s) 372, 450
BpuMI CCSGG 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 1019
BsaJI CCNNGG 3 cut(s) 161, 785, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 773, 803
Bsc4I CCNNNNNNNGG 6 cut(s) 244, 264, 355, 677, 734, 896
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 4 cut(s) 323, 638, 833, 898
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 3 cut(s) 350, 678, 787
BseDI CCNNGG 3 cut(s) 161, 785, 1051
BseGI GGATG 1 cut(s) 948
BseLI CCNNNNNNNGG 6 cut(s) 244, 264, 355, 677, 734, 896
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 57, 363, 464, 488
BseNI ACTGG 4 cut(s) 323, 638, 833, 898
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 6 cut(s) 229, 442, 717, 787, 835, 893
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 7 cut(s) 132, 236, 248, 257, 412, 417, 505
BsiHKCI CYCGRG 1 cut(s) 1052
BsiSI CCGG 2 cut(s) 413, 437
BslFI GGGAC 3 cut(s) 46, 280, 397
BslI CCNNNNNNNGG 6 cut(s) 244, 264, 355, 677, 734, 896
BsmAI GTCTC 2 cut(s) 1019, 1050
BsmFI GGGAC 3 cut(s) 46, 280, 397
BsmI GAATGC 1 cut(s) 884
BsnI GGCC 7 cut(s) 132, 236, 248, 257, 412, 417, 505
Bso31I GGTCTC 1 cut(s) 1019
BsoBI CYCGRG 1 cut(s) 1052
Bsp1286I GDGCHC 1 cut(s) 786
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 6 cut(s) 245, 284, 434, 506, 735, 857
BspANI GGCC 7 cut(s) 132, 236, 248, 257, 412, 417, 505
BspCNI CTCAG 4 cut(s) 56, 364, 463, 487
BspFNI CGCG 1 cut(s) 508
BspHI TCATGA 2 cut(s) 607, 661
BspLI GGNNCC 2 cut(s) 268, 783
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 3 cut(s) 41, 575, 867
BspTNI GGTCTC 1 cut(s) 1019
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 4 cut(s) 323, 638, 833, 898
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 161, 785, 1051
BssMI GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 3 cut(s) 350, 678, 787
Bst4CI ACNGT 2 cut(s) 60, 542
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 438, 879
BstDEI CTNAG 4 cut(s) 43, 372, 450, 474
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 948
BstFNI CGCG 1 cut(s) 508
BstH2I RGCGCY 2 cut(s) 25, 1000
BstHHI GCGC 3 cut(s) 24, 510, 999
BstKTI GATC 8 cut(s) 49, 195, 583, 717, 814, 862, 993, 1033
BstMAI GTCTC 2 cut(s) 1019, 1050
BstMBI GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
BstMWI GCNNNNNNNGC 9 cut(s) 242, 254, 301, 433, 446, 455, 781, 803, 854
BstNI CCWGG 3 cut(s) 350, 678, 787
BstNSI RCATGY 1 cut(s) 950
BstPAI GACNNNNGTC 1 cut(s) 638
BstSCI CCNGG 4 cut(s) 348, 412, 676, 785
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 6 cut(s) 229, 442, 717, 787, 835, 893
BstX2I RGATCY 2 cut(s) 46, 859
BstXI CCANNNNNNTGG 2 cut(s) 467, 1010
BstYI RGATCY 2 cut(s) 46, 859
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 7 cut(s) 132, 236, 248, 257, 412, 417, 505
BtgI CCRYGG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 948
BtsIMutI CAGTG 2 cut(s) 56, 547
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 2 cut(s) 438, 879
CciI TCATGA 2 cut(s) 607, 661
CfoI GCGC 3 cut(s) 24, 510, 999
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 6 cut(s) 204, 235, 256, 267, 415, 789
CseI GACGC 2 cut(s) 394, 699
Csp6I GTAC 2 cut(s) 550, 616
CviAII CATG 8 cut(s) 162, 608, 662, 921, 947, 1004, 1034, 1040
CviQI GTAC 2 cut(s) 550, 616
DdeI CTNAG 4 cut(s) 43, 372, 450, 474
DpnI GATC 8 cut(s) 48, 194, 582, 716, 813, 861, 992, 1032
DpnII GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
DraIII CACNNNGTG 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 410
EciI GGCGGA 2 cut(s) 423, 872
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 786
Eco31I GGTCTC 1 cut(s) 1019
Eco47I GGWCC 3 cut(s) 204, 267, 789
Eco88I CYCGRG 1 cut(s) 1052
EcoO109I RGGNCCY 2 cut(s) 204, 267
EcoRII CCWGG 3 cut(s) 348, 676, 785
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 948
EcoT38I GRGCYC 1 cut(s) 786
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 8 cut(s) 165, 611, 665, 924, 950, 1007, 1037, 1043
FaqI GGGAC 3 cut(s) 46, 280, 397
FatI CATG 8 cut(s) 161, 607, 661, 920, 946, 1003, 1033, 1039
FauNDI CATATG 1 cut(s) 701
FbaI TGATCA 2 cut(s) 811, 1030
Fnu4HI GCNGC 8 cut(s) 243, 246, 456, 506, 706, 776, 849, 882
FokI GGATG 1 cut(s) 955
FriOI GRGCYC 1 cut(s) 786
Fsp4HI GCNGC 8 cut(s) 243, 246, 456, 506, 706, 776, 849, 882
GlaI GCGC 3 cut(s) 23, 509, 998
GluI GCNGC 8 cut(s) 243, 246, 456, 506, 706, 776, 849, 882
GsuI CTGGAG 3 cut(s) 621, 660, 915
HaeII RGCGCY 2 cut(s) 25, 1000
HaeIII GGCC 7 cut(s) 132, 236, 248, 257, 412, 417, 505
HapII CCGG 2 cut(s) 413, 437
HgaI GACGC 2 cut(s) 394, 699
HhaI GCGC 3 cut(s) 24, 510, 999
Hin1II CATG 8 cut(s) 165, 611, 665, 924, 950, 1007, 1037, 1043
Hin6I GCGC 3 cut(s) 22, 508, 997
HinP1I GCGC 3 cut(s) 22, 508, 997
HinfI GANTC 4 cut(s) 480, 604, 634, 1043
HpaII CCGG 2 cut(s) 413, 437
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 616
Hpy188I TCNGA 2 cut(s) 46, 651
Hpy188III TCNNGA 8 cut(s) 190, 443, 498, 608, 662, 792, 910, 1054
Hpy8I GTNNAC 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 78, 100, 134, 495
HpyCH4III ACNGT 2 cut(s) 60, 542
HpyCH4IV ACGT 2 cut(s) 558, 724
HpyCH4V TGCA 7 cut(s) 16, 175, 705, 740, 775, 851, 946
HpyF10VI GCNNNNNNNGC 9 cut(s) 242, 254, 301, 433, 446, 455, 781, 803, 854
HpyF3I CTNAG 4 cut(s) 43, 372, 450, 474
HpySE526I ACGT 2 cut(s) 558, 724
Hsp92II CATG 8 cut(s) 165, 611, 665, 924, 950, 1007, 1037, 1043
HspAI GCGC 3 cut(s) 22, 508, 997
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Ksp22I TGATCA 2 cut(s) 811, 1030
Kzo9I GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
LmnI GCTCC 2 cut(s) 529, 781
Lsp1109I GCAGC 6 cut(s) 229, 442, 717, 787, 835, 893
LweI GCATC 2 cut(s) 436, 933
MaeII ACGT 2 cut(s) 558, 724
MaeIII GTNAC 1 cut(s) 224
MalI GATC 8 cut(s) 48, 194, 582, 716, 813, 861, 992, 1032
MboI GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
MboII GAAGA 5 cut(s) 475, 709, 766, 997, 1000
MflI RGATCY 2 cut(s) 46, 859
MhlI GDGCHC 1 cut(s) 786
MluCI AATT 4 cut(s) 141, 743, 747, 964
MlyI GAGTC 2 cut(s) 628, 1052
Mph1103I ATGCAT 1 cut(s) 948
MroNI GCCGGC 1 cut(s) 436
MseI TTAA 3 cut(s) 518, 746, 825
MslI CAYNNNNRTG 4 cut(s) 214, 660, 1008, 1038
MspA1I CMGCKG 1 cut(s) 708
MspI CCGG 2 cut(s) 413, 437
MspR9I CCNGG 4 cut(s) 350, 414, 678, 787
Mva1269I GAATGC 1 cut(s) 884
MvaI CCWGG 3 cut(s) 350, 678, 787
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 9 cut(s) 242, 254, 301, 433, 446, 455, 781, 803, 854
NaeI GCCGGC 1 cut(s) 438
NciI CCSGG 1 cut(s) 414
NcoI CCATGG 1 cut(s) 161
NdeI CATATG 1 cut(s) 701
NdeII GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
NgoMIV GCCGGC 1 cut(s) 436
NlaIII CATG 8 cut(s) 165, 611, 665, 924, 950, 1007, 1037, 1043
NlaIV GGNNCC 2 cut(s) 268, 783
NmeAIII GCCGAG 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 948
NspI RCATGY 1 cut(s) 950
PagI TCATGA 2 cut(s) 607, 661
PctI GAATGC 1 cut(s) 884
PdiI GCCGGC 1 cut(s) 438
PfeI GAWTC 2 cut(s) 480, 604
PkrI GCNGC 8 cut(s) 244, 247, 457, 507, 707, 777, 850, 883
PleI GAGTC 2 cut(s) 628, 1051
PpsI GAGTC 2 cut(s) 628, 1051
PpuMI RGGWCCY 2 cut(s) 204, 267
PshAI GACNNNNGTC 1 cut(s) 638
PshBI ATTAAT 1 cut(s) 746
PsiI TTATAA 2 cut(s) 393, 953
Psp5II RGGWCCY 2 cut(s) 204, 267
Psp6I CCWGG 3 cut(s) 348, 676, 785
PspGI CCWGG 3 cut(s) 348, 676, 785
PspN4I GGNNCC 2 cut(s) 268, 783
PspPI GGNCC 6 cut(s) 204, 235, 256, 267, 415, 789
PspPPI RGGWCCY 2 cut(s) 204, 267
PsuI RGATCY 2 cut(s) 46, 859
PvuII CAGCTG 1 cut(s) 708
RsaI GTAC 2 cut(s) 551, 617
RsaNI GTAC 2 cut(s) 550, 616
RseI CAYNNNNRTG 4 cut(s) 214, 660, 1008, 1038
SaqAI TTAA 3 cut(s) 518, 746, 825
SatI GCNGC 8 cut(s) 243, 246, 456, 506, 706, 776, 849, 882
Sau3AI GATC 8 cut(s) 46, 192, 580, 714, 811, 859, 990, 1030
Sau96I GGNCC 6 cut(s) 204, 235, 256, 267, 415, 789
SchI GAGTC 2 cut(s) 628, 1052
ScrFI CCNGG 4 cut(s) 350, 414, 678, 787
SduI GDGCHC 1 cut(s) 786
SfaNI GCATC 2 cut(s) 436, 933
SfiI GGCCNNNNNGGCC 1 cut(s) 254
SinI GGWCC 3 cut(s) 204, 267, 789
SmiMI CAYNNNNRTG 4 cut(s) 214, 660, 1008, 1038
Sse9I AATT 4 cut(s) 141, 743, 747, 964
SsiI CCGC 6 cut(s) 245, 284, 434, 506, 735, 857
StyD4I CCNGG 4 cut(s) 348, 412, 676, 785
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 2 cut(s) 60, 542
TaiI ACGT 2 cut(s) 561, 727
TaqI TCGA 1 cut(s) 191
TasI AATT 4 cut(s) 141, 743, 747, 964
TatI WGTACW 2 cut(s) 549, 615
TauI GCSGC 2 cut(s) 248, 508
TfiI GAWTC 2 cut(s) 480, 604
Tru1I TTAA 3 cut(s) 518, 746, 825
Tru9I TTAA 3 cut(s) 518, 746, 825
TscAI CASTG 2 cut(s) 63, 547
TseI GCWGC 6 cut(s) 242, 455, 705, 775, 848, 881
TspDTI ATGAA 1 cut(s) 767
TspRI CASTG 2 cut(s) 63, 547
VpaK11BI GGWCC 3 cut(s) 204, 267, 789
VspI ATTAAT 1 cut(s) 746
XceI RCATGY 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.