MD06G1176300.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007090
Physical Location & Seq
Forward (+)
31602918 .. 31603360
443 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1176300.v1.1.491

Sequence Viewer

Length: 327 bp
ATGAGGTCACAATTAGGCAGTTCTAATTCTGACATTAGTGCTATTGCTGCCGAAAATGCCGTAATGACGGGATCAAGATTACCAGTCCTTGAATTACGAGACTCGGGTTCCTGCATAGAAGTTATGCTGATTAGTGGGTTGAATAAGAACTTCATGTTTTATGAAGTCATCCGTGTTCTTGAGGAACAAGGAGCTGAAGTTGTCAGCGCTAGCTTTTCCACTGTAGGCGATAAAGTTTTCCACTCGGTGCATGCTCAGGTCAAAATTTCTAGAGTTGGAGTAGAGACTTCAACGGTATGGCAGAGACTACAGGATTTGTTATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

109

Amino Acids

11.84

Weight (kDa)

5.26

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 216
AdeI CACNNNGTG 1 cut(s) 247
AfeI AGCGCT 1 cut(s) 208
AgsI TTSAA 3 cut(s) 92, 142, 291
AluBI AGCT 2 cut(s) 194, 213
AluI AGCT 2 cut(s) 194, 213
Alw26I GTCTC 3 cut(s) 93, 278, 298
AlwI GGATC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 103
BbvI GCAGC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 44
BcoDI GTCTC 3 cut(s) 93, 278, 298
BfaI CTAG 2 cut(s) 210, 270
BfmI CTRYAG 2 cut(s) 222, 308
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 109
BmtI GCTAGC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse1I ACTGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 168
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 83
BseXI GCAGC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 103
BsmAI GTCTC 3 cut(s) 93, 278, 298
BsoBI CYCGRG 1 cut(s) 103
Bsp143I GATC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 213
BspPI GGATC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 83
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 223, 295
BstC8I GCNNGC 2 cut(s) 211, 252
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 3 cut(s) 93, 278, 298
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 47, 56
BstNSI RCATGY 1 cut(s) 254
BstSFI CTRYAG 2 cut(s) 222, 308
BstV1I GCAGC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 211, 252
CfoI GCGC 1 cut(s) 209
CviAII CATG 2 cut(s) 154, 251
CviJI RGCY 2 cut(s) 194, 213
CviKI_1 RGCY 2 cut(s) 194, 213
DdeI CTNAG 1 cut(s) 255
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
DraIII CACNNNGTG 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 103
FaeI CATG 2 cut(s) 157, 254
FaiI YATR 7 cut(s) 116, 125, 155, 162, 252, 298, 322
FatI CATG 2 cut(s) 153, 250
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 210, 270
GlaI GCGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 210
HhaI GCGC 1 cut(s) 209
Hin1II CATG 2 cut(s) 157, 254
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 1 cut(s) 101
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 3 cut(s) 75, 179, 270
HpyCH4III ACNGT 2 cut(s) 223, 295
HpyCH4V TGCA 2 cut(s) 114, 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 56
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 2 cut(s) 157, 254
HspAI GCGC 1 cut(s) 207
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 4 cut(s) 96, 124, 242, 296
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 2 cut(s) 210, 270
MaeIII GTNAC 1 cut(s) 6
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MluCI AATT 4 cut(s) 11, 25, 92, 264
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 47, 56
NdeII GATC 1 cut(s) 71
NheI GCTAGC 1 cut(s) 209
NlaIII CATG 2 cut(s) 157, 254
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 6
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 109
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 1 cut(s) 71
SchI GAGTC 1 cut(s) 95
SetI ASST 4 cut(s) 8, 196, 215, 261
SfcI CTRYAG 2 cut(s) 222, 308
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SphI GCATGC 1 cut(s) 254
Sse9I AATT 4 cut(s) 11, 25, 92, 264
SspMI CTAG 2 cut(s) 210, 270
TaaI ACNGT 2 cut(s) 223, 295
TasI AATT 4 cut(s) 11, 25, 92, 264
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 47
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 2 cut(s) 142, 177
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 226
XapI RAATTY 1 cut(s) 264
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 1 cut(s) 254
XspI CTAG 2 cut(s) 210, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.