Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007090

Physical Location & Seq

Genomic Coordinates Forward (+)

17875155 .. 17876709

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACATCGAAAGTTCAGTTTCCAAAGTCTCTCCTCCTTATTTCCAAAGTCTCTCCCTTAATTTGCTCTCTATTTCTTGCTTTTCATGCTTCCTTGGATTTTGGGTGTTGTGGCTTTTGCTTCTTTTTAGAGAGAGAGAGAGAGAGAGAGAGGATGAAGAGGTGTAACAGTGAGTCTTCTTCCAAACCGGACAGGAAGACAGTGGAAAGAAACAGAAGAATTCACATGAAAAGTCTCTGCTTCAAGCTTGCTTCACTTGTTCCTCCTCAACACTTCAAAACCACCAACTCCAAGACCATGTCACAGCAAAATCAGCTTGATACTGCGGCATCCTATATAAAGAAACTGAGAGAGAGAATCGAGAATCTGAAAGAGAGGAAGGAGAGAGCAATGAGGTCACAATTAGGCAGTTCTAAGTCTGACATTGGCTATATTGACCCAGAAAAAACCGCGATGATGGGCTCAAGATTGCCAGTTATTGAATTAAGAGACTCGGGTTCAAGCATAGAAGTGATGCTGATCAGTGGGTTGAATAAGAACTTCATGTTTTATGAAGTCATCAGTGTTCTTGAGGAAGAAGGAGCTGAAGTTGTCAGTGCTAGCTTTACCACCATAGGCGATAAAGTTTTCCACTCGGTGCATGCTCAGGTCAAAATTTCTAGAGTTGGAGTAGATACTTCGACGGTATTGCAGAGACTACAGGATTTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

238

Amino Acids

26.94

Weight (kDa)

9.42

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10585 AT1G10585 AT1G10586 AT1G10586
fragaria_vesca	FvH4_5g05180 FvH4_5g05180
malus_domestica	MD06G1176300.v1.1 MD06G1176600.v1.1 MD14G1182700.v1.1
prunus_persica	Prupe.5G175200_v2.0.a1 Prupe.5G175300_v2.0.a1
pyrus_communis	pycom06g15660 pycom14g15170
rosa_chinensis	RchiOBHm_Chr7g0193761
rosa_laevigata	RLG00000004247
rosa_multiflora	Rmu_sc0001436.1_g000021
rosa_roxburghii	Rroxscaffold_3G00261860
rosa_rugosa	Rorug07G0011700 Rorug07G0011800 Rorug07G0011900
rosa_samantha	Rh7AG138500 Rh7BG138800 Rh7CG142300 Rh7DG139800
rosa_wichuraiana	Rw7G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	452
AciI	CCGC	2 cut(s)	326, 450
AcsI	RAATTY	2 cut(s)	219, 654
AcuI	CTGAAG	1 cut(s)	606
AdeI	CACNNNGTG	1 cut(s)	637
AgsI	TTSAA	5 cut(s)	244, 277, 482, 501, 532
AluBI	AGCT	4 cut(s)	247, 316, 584, 603
AluI	AGCT	4 cut(s)	247, 316, 584, 603
Alw26I	GTCTC	5 cut(s)	33, 55, 239, 483, 688
Ama87I	CYCGRG	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	219, 654
AsuNHI	GCTAGC	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	464
BbsI	GAAGAC	2 cut(s)	168, 203
BccI	CCATC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	670, 704
BclI	TGATCA	1 cut(s)	519
BcoDI	GTCTC	5 cut(s)	33, 55, 239, 483, 688
BfaI	CTAG	2 cut(s)	600, 660
BfmI	CTRYAG	1 cut(s)	698
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	493
BmsI	GCATC	2 cut(s)	338, 504
BmtI	GCTAGC	1 cut(s)	603
BpiI	GAAGAC	2 cut(s)	168, 203
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	448, 590
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	518
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	2 cut(s)	159, 329
BseJI	GATNNNNATC	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	338, 659
BseNI	ACTGG	1 cut(s)	473
BseRI	GAGGAG	2 cut(s)	23, 255
Bsh1236I	CGCG	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	1 cut(s)	188
BsmAI	GTCTC	5 cut(s)	33, 55, 239, 483, 688
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	326, 450
BspCNI	CTCAG	2 cut(s)	339, 658
BspFNI	CGCG	1 cut(s)	452
BspOI	GCTAGC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	170, 202, 685
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	249, 601, 642
BstDEI	CTNAG	3 cut(s)	347, 414, 645
BstF5I	GGATG	2 cut(s)	159, 329
BstFNI	CGCG	1 cut(s)	452
BstKTI	GATC	1 cut(s)	522
BstMAI	GTCTC	5 cut(s)	33, 55, 239, 483, 688
BstMBI	GATC	1 cut(s)	519
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 313
BstNSI	RCATGY	1 cut(s)	644
BstSFI	CTRYAG	1 cut(s)	698
BstUI	CGCG	1 cut(s)	452
BstV2I	GAAGAC	2 cut(s)	168, 203
BtgZI	GCGATG	1 cut(s)	467
BtsCI	GGATG	2 cut(s)	159, 329
BtsIMutI	CAGTG	5 cut(s)	175, 207, 529, 568, 601
Cac8I	GCNNGC	3 cut(s)	249, 601, 642
CviAII	CATG	5 cut(s)	86, 226, 298, 544, 641
CviJI	RGCY	7 cut(s)	114, 247, 316, 429, 462, 584, 603
CviKI_1	RGCY	7 cut(s)	114, 247, 316, 429, 462, 584, 603
DdeI	CTNAG	3 cut(s)	347, 414, 645
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	5 cut(s)	89, 229, 301, 547, 644
FatI	CATG	5 cut(s)	85, 225, 297, 543, 640
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	166, 316
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	2 cut(s)	600, 660
GluI	GCNGC	1 cut(s)	327
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	5 cut(s)	89, 229, 301, 547, 644
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	173, 357, 364, 491
HpaII	CCGG	1 cut(s)	188
Hpy188I	TCNGA	2 cut(s)	369, 421
Hpy188III	TCNNGA	4 cut(s)	361, 465, 569, 660
Hpy99I	CGWCG	1 cut(s)	685
HpyAV	CCTTC	2 cut(s)	373, 572
HpyCH4III	ACNGT	3 cut(s)	170, 202, 685
HpyCH4V	TGCA	2 cut(s)	640, 691
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 313
HpyF3I	CTNAG	3 cut(s)	347, 414, 645
Hsp92II	CATG	5 cut(s)	89, 229, 301, 547, 644
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	581
LpnPI	CCDG	6 cut(s)	178, 201, 453, 486, 632, 686
LweI	GCATC	2 cut(s)	338, 504
MaeI	CTAG	2 cut(s)	600, 660
MaeIII	GTNAC	3 cut(s)	164, 300, 396
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	6 cut(s)	168, 169, 171, 208, 228, 587
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	5 cut(s)	60, 219, 401, 482, 654
MlyI	GAGTC	2 cut(s)	182, 485
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	8 cut(s)	44, 144, 153, 273, 276, 369, 387, 565
MseI	TTAA	2 cut(s)	59, 485
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	86, 313
NdeII	GATC	1 cut(s)	519
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	5 cut(s)	89, 229, 301, 547, 644
NmuCI	GTSAC	2 cut(s)	300, 396
NspI	RCATGY	1 cut(s)	644
PaeI	GCATGC	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	357, 364
PflFI	GACNNNGTC	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	181, 485
PpsI	GAGTC	2 cut(s)	181, 485
PsyI	GACNNNGTC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	59, 485
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	519
SchI	GAGTC	2 cut(s)	182, 485
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	7 cut(s)	164, 249, 318, 398, 586, 605, 651
SfaNI	GCATC	2 cut(s)	338, 504
SfcI	CTRYAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	463, 569
SmoI	CTYRAG	2 cut(s)	463, 569
SphI	GCATGC	1 cut(s)	644
Sse9I	AATT	5 cut(s)	60, 219, 401, 482, 654
SsiI	CCGC	2 cut(s)	326, 450
SspMI	CTAG	2 cut(s)	600, 660
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	170, 202, 685
TaqI	TCGA	3 cut(s)	8, 360, 680
TasI	AATT	5 cut(s)	60, 219, 401, 482, 654
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	2 cut(s)	357, 364
Tru1I	TTAA	2 cut(s)	59, 485
Tru9I	TTAA	2 cut(s)	59, 485
TscAI	CASTG	5 cut(s)	175, 207, 529, 568, 601
TseFI	GTSAC	2 cut(s)	300, 396
Tsp45I	GTSAC	2 cut(s)	300, 396
TspDTI	ATGAA	5 cut(s)	74, 170, 242, 532, 567
TspRI	CASTG	5 cut(s)	175, 207, 529, 568, 601
Tth111I	GACNNNGTC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	219, 654
XbaI	TCTAGA	1 cut(s)	659
XceI	RCATGY	1 cut(s)	644
XspI	CTAG	2 cut(s)	600, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.