AT1G11880

Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
4007705 .. 4010461
2757 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11880.2

Sequence Viewer

Length: 1470 bp
ATGGCGAAAGCTTTGGAATCAAACTCGAAATCAAGGAAAGAAACCATCTTGATCAAATACGCCATCTTCTCGCGACTTCTCGTTCTCTTCTTAACCATTTTGTGGCGGAGCTTACTCCAACCGTACGATACATCCGCTGCACTGAATCCTCCTTGCTTGTATCACAAAGAAGATTCTTTTCCGTTTCTAGTAGCCAATGCAGCTTCGAGATCCCTTGAGAACAGTGTTGTCTGGGACAGTGTTTATTTTCTCCGAATCACAGAGTGTGGCTATGAGTATGAGCAGACTTACGCCTTCTTGCCTCTGCTTCCTTTCTTCATCTCGCTTCTCTCTCGCACAGTTTTTGCGCCTTTGGTTCCATTGATTGGTCTTCGAGCTGTGATGGTGTTGTCTGGTTTCACTGTTAGTAACTTGGCGTTCATATTTGCTGCTATCTATCTATTTAGGGTTTCAGTTATTATCTTGAAGGATACTGAAGCATCATTCAGAGCTTCGATTATCTTCTGTTTCAATCCGGCGTCCATATTTTATTCGTCAATATATTCAGAAAGTTTGTATGCTCTTTTCTCTATTGGAGGAGTGTATCACTTGTTATCTGGTACCAGCAATGTAGGCGTTCTTTGGTTTGCTCTCTCAGGCTGTGCAAGGTCCAATGGAATTCTTAATGCTGGTTATATCTGTTTCCAGACAATGCATCGAGCATATGAAGCTTTATATCAGAAACGGCGTGCTTATTTAGCTATGCAGGTTTTTATTGCTGGATTTCTTAGATGCATATGCATTTGTCTTCCTTTTGTCGCATTTCAAGCATACGGATACTATAACATCTGCCATGGACATACGCGTGATGAAGTGAGGCCTTGGTGCAAAGGAAGGATTCCGTTGCTGTATAACTTCATTCAAAGTCATTATTGGGGAGTAGGTTTCCTTAAATACTTTCAGTTTAAGCAGCTCCCAAACTTTCTGCTCGCATCCCCAATTCTCTCTTTAGCTGTGTGTTCGATTATGAGTTACATGAAGTCTCGGCCTGAGCTCTTCATATCGCTGGGGTTTCAAGCCACCGAGAAAGAAAAGAGATCTGCTGCCAGACTTTATTCTCTGAAGGATGCAGTTGAACCAAGTGTTAAAACTTCAACAAATGAAGGAAACCATGACATTAGGCAGCGGAAACCTAGCAGTAAGAAGGATGTGACTGGGACCAAAGTGGCTCCAGAAAAATCAGGATACCTTTCAGCTGATGTTTTCCCATTTATCGTACACTTGAGTTTTATGGTAACCACGGCGTTCTTCATCATGCATGTCCAGGTTGCAACAAGGTTCTTGTCAGCAAGCCCTCCACTTTACTGGTTTGCATCGTCTTTGATTGGATCTCCAAAACATAGTAAATGGGGGTACTTGATATGGTCATATTGTGCAGCCTATATCCTTCTTGGTACTTTGCTCTTCTCAAACTTTTATCCCTTCACTTGA

Protein Analysis

489

Amino Acids

55.46

Weight (kDa)

9.36

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mannosyl_trans2 PF04188 14 - 363 8.6e-169 Mannosyltransferase (PIG-V)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 736
Acc65I GGTACC 1 cut(s) 599
AccB1I GGYRCC 1 cut(s) 599
AccB7I CCANNNNNTGG 2 cut(s) 102, 365
AccII CGCG 2 cut(s) 73, 844
AciI CCGC 3 cut(s) 106, 135, 1165
AclWI GGATC 2 cut(s) 204, 1375
AcsI RAATTY 1 cut(s) 657
AcuI CTGAAG 2 cut(s) 495, 1121
AcyI GRCGYC 1 cut(s) 518
AdeI CACNNNGTG 1 cut(s) 264
AfaI GTAC 5 cut(s) 125, 601, 1257, 1394, 1435
AfiI CCNNNNNNNGG 2 cut(s) 102, 365
AflIII ACRYGT 1 cut(s) 842
AgsI TTSAA 7 cut(s) 466, 511, 806, 902, 1055, 1115, 1134
AjnI CCWGG 1 cut(s) 1302
Alw21I GWGCWC 1 cut(s) 1035
Alw26I GTCTC 1 cut(s) 1026
AlwI GGATC 2 cut(s) 204, 1375
AoxI GGCC 2 cut(s) 857, 1025
ApeKI GCWGC 7 cut(s) 137, 200, 428, 949, 1082, 1162, 1415
ApoI RAATTY 1 cut(s) 657
Asp718I GGTACC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 648, 1197
AvaII GGWCC 2 cut(s) 648, 1197
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 1035
BbsI GAAGAC 2 cut(s) 362, 779
Bbv12I GWGCWC 1 cut(s) 1035
BbvI GCAGC 7 cut(s) 124, 212, 415, 961, 1069, 1174, 1427
BccI CCATC 3 cut(s) 53, 71, 376
BceAI ACGGC 2 cut(s) 740, 1296
BciT130I CCWGG 1 cut(s) 1304
BciVI GTATCC 3 cut(s) 463, 809, 1217
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 1 cut(s) 1026
BfaI CTAG 2 cut(s) 188, 1173
BfuAI ACCTGC 1 cut(s) 736
BfuI GTATCC 3 cut(s) 463, 809, 1217
BglII AGATCT 1 cut(s) 1076
BisI GCNGC 7 cut(s) 138, 201, 429, 950, 1083, 1163, 1416
BlsI GCNGC 7 cut(s) 139, 202, 430, 951, 1084, 1164, 1417
Bme1390I CCNGG 1 cut(s) 1304
Bme18I GGWCC 2 cut(s) 648, 1197
BmgT120I GGNCC 2 cut(s) 648, 1197
BmiI GGNNCC 4 cut(s) 357, 601, 1198, 1209
BmrFI CCNGG 1 cut(s) 1304
BmrI ACTGGG 1 cut(s) 1203
BmsI GCATC 6 cut(s) 488, 703, 761, 980, 1096, 1361
BmuI ACTGGG 1 cut(s) 1203
BpiI GAAGAC 2 cut(s) 362, 779
BpmI CTGGAG 1 cut(s) 1194
Bpu10I CCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 236, 1282
BsaHI GRCGYC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 832, 860, 1278
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 365
Bse1I ACTGG 2 cut(s) 1198, 1349
Bse3DI GCAATG 1 cut(s) 613
BseBI CCWGG 1 cut(s) 1304
BseDI CCNNGG 3 cut(s) 832, 860, 1278
BseGI GGATG 4 cut(s) 131, 971, 1111, 1192
BseLI CCNNNNNNNGG 2 cut(s) 102, 365
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 648, 1020
BseNI ACTGG 2 cut(s) 1198, 1349
BseRI GAGGAG 1 cut(s) 591
BseXI GCAGC 7 cut(s) 124, 212, 415, 961, 1069, 1174, 1427
BseYI CCCAGC 1 cut(s) 1045
BsgI GTGCAG 2 cut(s) 123, 1434
Bsh1236I CGCG 2 cut(s) 73, 844
BshFI GGCC 2 cut(s) 859, 1027
BshNI GGYRCC 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 1035
BsiSI CCGG 1 cut(s) 515
BsiWI CGTACG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 248, 1210
BslI CCNNNNNNNGG 2 cut(s) 102, 365
BsmAI GTCTC 1 cut(s) 1026
BsmFI GGGAC 2 cut(s) 248, 1210
BsnI GGCC 2 cut(s) 859, 1027
Bsp1286I GDGCHC 1 cut(s) 1035
Bsp143I GATC 4 cut(s) 51, 209, 1076, 1367
Bsp19I CCATGG 1 cut(s) 832
Bsp68I TCGCGA 1 cut(s) 73
BspACI CCGC 3 cut(s) 106, 135, 1165
BspANI GGCC 2 cut(s) 859, 1027
BspCNI CTCAG 2 cut(s) 647, 1021
BspFNI CGCG 2 cut(s) 73, 844
BspLI GGNNCC 4 cut(s) 357, 601, 1198, 1209
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 2 cut(s) 204, 1375
BspQI GCTCTTC 2 cut(s) 1040, 1448
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 2 cut(s) 1198, 1349
BssECI CCNNGG 3 cut(s) 832, 860, 1278
BssMI GATC 4 cut(s) 51, 209, 1076, 1367
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 2 cut(s) 832, 860
Bst2UI CCWGG 1 cut(s) 1304
Bst4CI ACNGT 5 cut(s) 123, 224, 239, 340, 403
Bst6I CTCTTC 3 cut(s) 92, 1040, 1448
BstACI GRCGYC 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 729, 969, 1330
BstDEI CTNAG 3 cut(s) 634, 767, 1029
BstDSI CCRYGG 2 cut(s) 832, 1278
BstEII GGTNACC 1 cut(s) 1273
BstF5I GGATG 4 cut(s) 131, 971, 1111, 1192
BstFNI CGCG 2 cut(s) 73, 844
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 4 cut(s) 54, 212, 1079, 1370
BstMAI GTCTC 1 cut(s) 1026
BstMBI GATC 4 cut(s) 51, 209, 1076, 1367
BstMWI GCNNNNNNNGC 5 cut(s) 200, 612, 707, 737, 806
BstNI CCWGG 1 cut(s) 1304
BstNSI RCATGY 1 cut(s) 1301
BstPI GGTNACC 1 cut(s) 1273
BstSCI CCNGG 1 cut(s) 1302
BstUI CGCG 2 cut(s) 73, 844
BstV1I GCAGC 7 cut(s) 124, 212, 415, 961, 1069, 1174, 1427
BstV2I GAAGAC 2 cut(s) 362, 779
BstX2I RGATCY 3 cut(s) 209, 1076, 1367
BstXI CCANNNNNNTGG 1 cut(s) 1344
BstYI RGATCY 3 cut(s) 209, 1076, 1367
BsuI GTATCC 3 cut(s) 463, 809, 1217
BsuRI GGCC 2 cut(s) 859, 1027
BtgI CCRYGG 2 cut(s) 832, 1278
BtsCI GGATG 4 cut(s) 131, 971, 1111, 1192
BtsIMutI CAGTG 4 cut(s) 140, 229, 244, 399
BtuMI TCGCGA 1 cut(s) 73
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 3 cut(s) 729, 969, 1330
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 648, 1197
CseI GACGC 1 cut(s) 507
Csp6I GTAC 5 cut(s) 124, 600, 1256, 1393, 1434
CviAII CATG 5 cut(s) 833, 1015, 1151, 1294, 1298
CviQI GTAC 5 cut(s) 124, 600, 1256, 1393, 1434
DdeI CTNAG 3 cut(s) 634, 767, 1029
DpnI GATC 4 cut(s) 53, 211, 1078, 1369
DpnII GATC 4 cut(s) 51, 209, 1076, 1367
DraIII CACNNNGTG 1 cut(s) 264
Eam1104I CTCTTC 3 cut(s) 92, 1040, 1448
EarI CTCTTC 3 cut(s) 92, 1040, 1448
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 1033
Eco130I CCWWGG 2 cut(s) 832, 860
Eco147I AGGCCT 1 cut(s) 859
Eco24I GRGCYC 1 cut(s) 1035
Eco47I GGWCC 2 cut(s) 648, 1197
Eco53kI GAGCTC 1 cut(s) 1033
Eco57I CTGAAG 2 cut(s) 495, 1121
Eco91I GGTNACC 1 cut(s) 1273
EcoICRI GAGCTC 1 cut(s) 1033
EcoO65I GGTNACC 1 cut(s) 1273
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 1302
EcoT14I CCWWGG 2 cut(s) 832, 860
EcoT22I ATGCAT 4 cut(s) 696, 776, 782, 1299
EcoT38I GRGCYC 1 cut(s) 1035
ErhI CCWWGG 2 cut(s) 832, 860
FaeI CATG 5 cut(s) 836, 1018, 1154, 1297, 1301
FaqI GGGAC 2 cut(s) 248, 1210
FatI CATG 5 cut(s) 832, 1014, 1150, 1293, 1297
FauNDI CATATG 2 cut(s) 703, 776
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 7 cut(s) 138, 201, 429, 950, 1083, 1163, 1416
FokI GGATG 4 cut(s) 118, 958, 1118, 1199
FriOI GRGCYC 1 cut(s) 1035
Fsp4HI GCNGC 7 cut(s) 138, 201, 429, 950, 1083, 1163, 1416
FspBI CTAG 2 cut(s) 188, 1173
GlaI GCGC 1 cut(s) 348
GluI GCNGC 7 cut(s) 138, 201, 429, 950, 1083, 1163, 1416
GsaI CCCAGC 1 cut(s) 1049
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 2 cut(s) 859, 1027
HapII CCGG 1 cut(s) 515
HgaI GACGC 1 cut(s) 507
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 1 cut(s) 518
Hin1II CATG 5 cut(s) 836, 1018, 1154, 1297, 1301
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HindIII AAGCTT 2 cut(s) 9, 708
HinfI GANTC 5 cut(s) 17, 145, 173, 255, 877
HpaII CCGG 1 cut(s) 515
Hpy166II GTNNAC 1 cut(s) 1258
Hpy188I TCNGA 5 cut(s) 254, 488, 547, 720, 1101
Hpy188III TCNNGA 7 cut(s) 49, 72, 207, 463, 685, 1211, 1221
Hpy8I GTNNAC 1 cut(s) 1258
HpyAV CCTTC 7 cut(s) 304, 460, 867, 1096, 1136, 1177, 1436
HpyCH4III ACNGT 5 cut(s) 123, 224, 239, 340, 403
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 612, 707, 737, 806
HpyF3I CTNAG 3 cut(s) 634, 767, 1029
Hsp92I GRCGYC 1 cut(s) 518
Hsp92II CATG 5 cut(s) 836, 1018, 1154, 1297, 1301
HspAI GCGC 1 cut(s) 347
KpnI GGTACC 1 cut(s) 603
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 4 cut(s) 51, 209, 1076, 1367
LguI GCTCTTC 2 cut(s) 1040, 1448
LmnI GCTCC 3 cut(s) 108, 957, 1213
Lsp1109I GCAGC 7 cut(s) 124, 212, 415, 961, 1069, 1174, 1427
LweI GCATC 6 cut(s) 488, 703, 761, 980, 1096, 1361
MaeI CTAG 2 cut(s) 188, 1173
MaeIII GTNAC 4 cut(s) 407, 1010, 1189, 1273
MalI GATC 4 cut(s) 53, 211, 1078, 1369
MboI GATC 4 cut(s) 51, 209, 1076, 1367
MflI RGATCY 3 cut(s) 209, 1076, 1367
MhlI GDGCHC 1 cut(s) 1035
MluCI AATT 2 cut(s) 657, 978
MluI ACGCGT 1 cut(s) 842
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 5 cut(s) 159, 312, 569, 849, 1344
Mph1103I ATGCAT 4 cut(s) 696, 776, 782, 1299
MseI TTAA 5 cut(s) 92, 663, 930, 945, 1125
MslI CAYNNNNRTG 1 cut(s) 843
MspA1I CMGCKG 3 cut(s) 137, 1165, 1235
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 1304
MvaI CCWGG 1 cut(s) 1304
MvnI CGCG 2 cut(s) 73, 844
MwoI GCNNNNNNNGC 5 cut(s) 200, 612, 707, 737, 806
NcoI CCATGG 1 cut(s) 832
NdeI CATATG 2 cut(s) 703, 776
NdeII GATC 4 cut(s) 51, 209, 1076, 1367
NlaIII CATG 5 cut(s) 836, 1018, 1154, 1297, 1301
NlaIV GGNNCC 4 cut(s) 357, 601, 1198, 1209
NmeAIII GCCGAG 1 cut(s) 1003
NmuCI GTSAC 1 cut(s) 1189
NruI TCGCGA 1 cut(s) 73
NsiI ATGCAT 4 cut(s) 696, 776, 782, 1299
NspI RCATGY 1 cut(s) 1301
PceI AGGCCT 1 cut(s) 859
PciSI GCTCTTC 2 cut(s) 1040, 1448
PfeI GAWTC 5 cut(s) 17, 145, 173, 255, 877
Pfl23II CGTACG 1 cut(s) 123
PflMI CCANNNNNTGG 2 cut(s) 102, 365
PkrI GCNGC 7 cut(s) 139, 202, 430, 951, 1084, 1164, 1417
Psp124BI GAGCTC 1 cut(s) 1035
Psp6I CCWGG 1 cut(s) 1302
PspEI GGTNACC 1 cut(s) 1273
PspFI CCCAGC 1 cut(s) 1045
PspGI CCWGG 1 cut(s) 1302
PspLI CGTACG 1 cut(s) 123
PspN4I GGNNCC 4 cut(s) 357, 601, 1198, 1209
PspPI GGNCC 2 cut(s) 648, 1197
PsuI RGATCY 3 cut(s) 209, 1076, 1367
PvuII CAGCTG 1 cut(s) 1235
RruI TCGCGA 1 cut(s) 73
RsaI GTAC 5 cut(s) 125, 601, 1257, 1394, 1435
RsaNI GTAC 5 cut(s) 124, 600, 1256, 1393, 1434
RseI CAYNNNNRTG 1 cut(s) 843
SacI GAGCTC 1 cut(s) 1035
SapI GCTCTTC 2 cut(s) 1040, 1448
SaqAI TTAA 5 cut(s) 92, 663, 930, 945, 1125
SatI GCNGC 7 cut(s) 138, 201, 429, 950, 1083, 1163, 1416
Sau3AI GATC 4 cut(s) 51, 209, 1076, 1367
Sau96I GGNCC 2 cut(s) 648, 1197
ScrFI CCNGG 1 cut(s) 1304
SduI GDGCHC 1 cut(s) 1035
SfaNI GCATC 6 cut(s) 488, 703, 761, 980, 1096, 1361
SinI GGWCC 2 cut(s) 648, 1197
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 2 cut(s) 215, 1261
SmoI CTYRAG 2 cut(s) 215, 1261
Sse9I AATT 2 cut(s) 657, 978
SseBI AGGCCT 1 cut(s) 859
SsiI CCGC 3 cut(s) 106, 135, 1165
SspMI CTAG 2 cut(s) 188, 1173
SstI GAGCTC 1 cut(s) 1035
StuI AGGCCT 1 cut(s) 859
StyD4I CCNGG 1 cut(s) 1302
StyI CCWWGG 2 cut(s) 832, 860
TaaI ACNGT 5 cut(s) 123, 224, 239, 340, 403
TaqI TCGA 6 cut(s) 26, 206, 373, 494, 697, 1001
TasI AATT 2 cut(s) 657, 978
TfiI GAWTC 5 cut(s) 17, 145, 173, 255, 877
Tru1I TTAA 5 cut(s) 92, 663, 930, 945, 1125
Tru9I TTAA 5 cut(s) 92, 663, 930, 945, 1125
TscAI CASTG 4 cut(s) 147, 229, 244, 406
TseFI GTSAC 1 cut(s) 1189
TseI GCWGC 7 cut(s) 137, 200, 428, 949, 1082, 1162, 1415
Tsp45I GTSAC 1 cut(s) 1189
TspDTI ATGAA 9 cut(s) 307, 409, 720, 864, 886, 1027, 1031, 1155, 1279
TspGWI ACGGA 3 cut(s) 171, 828, 870
TspRI CASTG 4 cut(s) 147, 229, 244, 406
Van91I CCANNNNNTGG 2 cut(s) 102, 365
VpaK11BI GGWCC 2 cut(s) 648, 1197
XapI RAATTY 1 cut(s) 657
XceI RCATGY 1 cut(s) 1301
XspI CTAG 2 cut(s) 188, 1173
Zsp2I ATGCAT 4 cut(s) 696, 776, 782, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.