pycom03g00840

Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
645602 .. 649329
3728 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00840.6

Sequence Viewer

Length: 1518 bp
ATGCCTCCGACCAAATTCTCACCGAAACTCCACCATGAAGCCACAGTGATCAGATCAGCAATCCAGTCCAGACTCCTAGTCCTGACTCTTATCCTCCTATGGCGGACTCTCTTGTCCTCCTACGACACCTCCGCCTCCATCAATCCCGATTGCCTATCTACCATCCCCTCACAAAAAAACGTTCTCTTTCATTCCCTGGGTTTGGCTATCGAGTCCAGCATTGTATGGGACAGTGTCTACTTTGCAGAGTGTGGCTACGAGTACGAGCAGATCGACGCTTTCTTCCCCCTTCTTCCTCTTTGCATGTCGTTCTTATCCCGCACAGTTTTGGCGCCATTGGTTCCAGTTATTGGGCAAAGAGCTGTGTTGGGATTATCCGGCTATGTCATTAATAACATTGGCTTCGTGTTTGCGGCAGTTTATTTATACAGGCTTTCAGTTGTCATTTTGAAGGACCAAGAAGCAGCAGTGAGGGCTTCAGTTTTGTTTTGCTTCAATCCAGCTTCCATATTCTATTCATCAATATATTCGGAGACATTGTTCGCCCTTTTTTCAGTTGGAGGATTGTACCATCTAATATCTGGAAAAGATGTCATTGCTGTTCTTTGGTTTGCTCTTTCAGGATTTTCAAGGTCCAATGGAGTGCTTAATGCTGGTTATTTCTGTTTTCAGACTATGCATCAGGCCTATGATGCTGTTTTCTTGAGAAAGCGTCCTTTTTTGGCATTGCAGGCTGTTGTTAGTGGAGCTCTGCGCTGCATATGTATATTTGTTCCTTTTATTGCATTTCAAGCATACGGATACAACAATCTCTGTCTTGGACATCTTCCGTCCGATATGAGGCCCTGGTGCAAAGCAAGAGTCCCTTTGTTGTACAATTATGTTCAGAGTCACTATTGGGGAGTAGGTTTCTTGAGATATTTCCAAGTTAAACAGTTGCCAAACTTTCTGCTGGCTTCACCAATAATGTCTCTGGCACTTTGCTCAATTGTCCATTACGCAAAGTCAAAGCCTGAAAAGTTCTTCTCTTTGGGTTTTCGTGCTCCTCCTGAGGATAAAGATTCTGCTGCTGTGCTCTTTTCTCTTGCAGAATACTCCTCCAGAAGTCAGGTATTTTTTGGAATATTGTTTCTCTTCCATTCATGCTGGCTTTCAACACTCTGTAATCAATCGTTTGCAAATGTAACAGAAAATCGCACAAGGAAGCAAGTGAACAAAGATGGTCCTGCTTTACTCCCAGAAGAACATAAGGTATCAGCAAAGCAAGGATACTTGTCTGTTGCTGTGCTTCCATGTATTCTACATTTGGGATTTATGGCAGCCACCGCATTTTTTGTCATGCATGTGCAGGTTGCTACTCGTTTCTTATCCTTCAGCCCTCCCCTCTATTGGTTTGCGTCGTATATAATGAATTCTCGTGGTACTGGTAAGAGATGGGGATGTATAGTTTGGGCATACTCTGCTGCGTACATTCTTCTAGGCAGTTTGCTCTTTTCGAACTTCTATCCTTTCACTTGA

Protein Analysis

506

Amino Acids

56.65

Weight (kDa)

9.12

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 1339
AccB1I GGYRCC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 350
AccI GTMKAC 1 cut(s) 237
AciI CCGC 5 cut(s) 103, 132, 319, 413, 1326
AclI AACGTT 1 cut(s) 180
AcsI RAATTY 2 cut(s) 14, 1411
AcuI CTGAAG 2 cut(s) 462, 1357
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 5 cut(s) 263, 569, 875, 1423, 1469
AfiI CCNNNNNNNGG 4 cut(s) 202, 350, 840, 1389
AgsI TTSAA 5 cut(s) 451, 496, 630, 791, 1155
AhdI GACNNNNNGTC 1 cut(s) 77
AjnI CCWGG 2 cut(s) 195, 845
AloI GAACNNNNNNTCC 2 cut(s) 524, 556
AluBI AGCT 3 cut(s) 362, 503, 749
AluI AGCT 3 cut(s) 362, 503, 749
Alw21I GWGCWC 3 cut(s) 751, 1045, 1077
Alw26I GTCTC 2 cut(s) 527, 975
AoxI GGCC 2 cut(s) 684, 842
ApeKI GCWGC 5 cut(s) 464, 756, 1067, 1319, 1463
ApoI RAATTY 2 cut(s) 14, 1411
ArsI GACNNNNNNTTYG 2 cut(s) 846, 878
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 2 cut(s) 334, 756
AspS9I GGNCC 4 cut(s) 454, 633, 843, 1223
AsuHPI GGTGA 2 cut(s) 12, 951
AsuII TTCGAA 1 cut(s) 1496
AvaII GGWCC 3 cut(s) 454, 633, 1223
AxyI CCTNAGG 1 cut(s) 1050
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 751
BauI CACGAG 1 cut(s) 1416
Bbv12I GWGCWC 3 cut(s) 751, 1045, 1077
BbvI GCAGC 5 cut(s) 476, 743, 1054, 1331, 1450
BccI CCATC 5 cut(s) 146, 170, 579, 1214, 1428
BciT130I CCWGG 2 cut(s) 197, 847
BciVI GTATCC 2 cut(s) 794, 1262
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 527, 975
BfaI CTAG 2 cut(s) 77, 1478
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 1339
BfuI GTATCC 2 cut(s) 794, 1262
BisI GCNGC 6 cut(s) 414, 465, 757, 1068, 1320, 1464
BlsI GCNGC 6 cut(s) 415, 466, 758, 1069, 1321, 1465
Bme1390I CCNGG 2 cut(s) 197, 847
Bme18I GGWCC 3 cut(s) 454, 633, 1223
BmeRI GACNNNNNGTC 1 cut(s) 77
BmgT120I GGNCC 4 cut(s) 454, 633, 843, 1223
BmiI GGNNCC 2 cut(s) 333, 342
BmrFI CCNGG 2 cut(s) 197, 847
BmsI GCATC 2 cut(s) 682, 688
BpmI CTGGAG 1 cut(s) 1084
Bpu14I TTCGAA 1 cut(s) 1496
BpuEI CTTGAG 2 cut(s) 724, 934
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 195, 196, 845
BsaXI ACNNNNNCTCC 6 cut(s) 12, 42, 113, 143, 524, 554
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 350, 840, 1389
Bse1I ACTGG 3 cut(s) 64, 344, 1429
Bse21I CCTNAGG 1 cut(s) 1050
Bse3DI GCAATG 2 cut(s) 594, 725
BseBI CCWGG 2 cut(s) 197, 847
BseDI CCNNGG 3 cut(s) 195, 196, 845
BseGI GGATG 2 cut(s) 162, 1445
BseLI CCNNNNNNNGG 4 cut(s) 202, 350, 840, 1389
BseMI GCAATG 2 cut(s) 594, 725
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 64, 344, 1429
BseRI GAGGAG 2 cut(s) 1035, 1087
BseXI GCAGC 5 cut(s) 476, 743, 1054, 1331, 1450
BsgI GTGCAG 1 cut(s) 1367
BshFI GGCC 2 cut(s) 686, 844
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 3 cut(s) 751, 1045, 1077
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 2 cut(s) 242, 848
BslI CCNNNNNNNGG 4 cut(s) 202, 350, 840, 1389
BsmAI GTCTC 2 cut(s) 527, 975
BsmFI GGGAC 2 cut(s) 242, 848
BsnI GGCC 2 cut(s) 686, 844
Bsp119I TTCGAA 1 cut(s) 1496
Bsp1286I GDGCHC 3 cut(s) 751, 1045, 1077
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 3 cut(s) 48, 53, 270
BspACI CCGC 5 cut(s) 103, 132, 319, 413, 1326
BspANI GGCC 2 cut(s) 686, 844
BspCNI CTCAG 1 cut(s) 1042
BspLI GGNNCC 2 cut(s) 333, 342
BspMI ACCTGC 1 cut(s) 1339
BspT104I TTCGAA 1 cut(s) 1496
BspT107I GGYRCC 1 cut(s) 331
BsrDI GCAATG 2 cut(s) 594, 725
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 3 cut(s) 64, 344, 1429
BssECI CCNNGG 3 cut(s) 195, 196, 845
BssMI GATC 3 cut(s) 48, 53, 270
BssNI GRCGYC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 1416
Bst2BI CACGAG 1 cut(s) 1416
Bst2UI CCWGG 2 cut(s) 197, 847
Bst4CI ACNGT 4 cut(s) 46, 233, 325, 936
Bst6I CTCTTC 1 cut(s) 1139
BstACI GRCGYC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstAUI TGTACA 1 cut(s) 873
BstBI TTCGAA 1 cut(s) 1496
BstC8I GCNNGC 3 cut(s) 732, 954, 1148
BstDEI CTNAG 1 cut(s) 1050
BstF5I GGATG 2 cut(s) 162, 1445
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 2 cut(s) 334, 756
BstKTI GATC 3 cut(s) 51, 56, 273
BstMAI GTCTC 2 cut(s) 527, 975
BstMBI GATC 3 cut(s) 48, 53, 270
BstMWI GCNNNNNNNGC 6 cut(s) 473, 692, 731, 791, 1325, 1460
BstNI CCWGG 2 cut(s) 197, 847
BstNSI RCATGY 2 cut(s) 307, 1346
BstSCI CCNGG 2 cut(s) 195, 845
BstV1I GCAGC 5 cut(s) 476, 743, 1054, 1331, 1450
Bsu36I CCTNAGG 1 cut(s) 1050
BsuI GTATCC 2 cut(s) 794, 1262
BsuRI GGCC 2 cut(s) 686, 844
BtsCI GGATG 2 cut(s) 162, 1445
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 3 cut(s) 51, 238, 474
BveI ACCTGC 1 cut(s) 1339
Cac8I GCNNGC 3 cut(s) 732, 954, 1148
CfoI GCGC 2 cut(s) 334, 756
Cfr13I GGNCC 4 cut(s) 454, 633, 843, 1223
CseI GACGC 3 cut(s) 284, 701, 1386
Csp6I GTAC 5 cut(s) 262, 568, 874, 1422, 1468
CviAII CATG 6 cut(s) 35, 304, 1143, 1293, 1339, 1343
CviQI GTAC 5 cut(s) 262, 568, 874, 1422, 1468
DdeI CTNAG 1 cut(s) 1050
DinI GGCGCC 1 cut(s) 333
DpnI GATC 3 cut(s) 50, 55, 272
DpnII GATC 3 cut(s) 48, 53, 270
DrdI GACNNNNNNGTC 1 cut(s) 112
DriI GACNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 1139
Eam1105I GACNNNNNGTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 1139
EciI GGCGGA 2 cut(s) 118, 121
Ecl136II GAGCTC 1 cut(s) 749
Eco147I AGGCCT 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 751
Eco47I GGWCC 3 cut(s) 454, 633, 1223
Eco53kI GAGCTC 1 cut(s) 749
Eco57I CTGAAG 2 cut(s) 462, 1357
Eco81I CCTNAGG 1 cut(s) 1050
EcoICRI GAGCTC 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 843
EcoRI GAATTC 1 cut(s) 1411
EcoRII CCWGG 2 cut(s) 195, 845
EcoT22I ATGCAT 2 cut(s) 681, 1344
EcoT38I GRGCYC 1 cut(s) 751
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
FaeI CATG 6 cut(s) 38, 307, 1146, 1296, 1342, 1346
FalI AAGNNNNNCTT 2 cut(s) 850, 882
FaqI GGGAC 2 cut(s) 242, 848
FatI CATG 6 cut(s) 34, 303, 1142, 1292, 1338, 1342
FauI CCCGC 1 cut(s) 326
FauNDI CATATG 1 cut(s) 761
FbaI TGATCA 1 cut(s) 48
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 6 cut(s) 414, 465, 757, 1068, 1320, 1464
FokI GGATG 2 cut(s) 149, 1452
FriOI GRGCYC 1 cut(s) 751
Fsp4HI GCNGC 6 cut(s) 414, 465, 757, 1068, 1320, 1464
FspBI CTAG 2 cut(s) 77, 1478
GlaI GCGC 2 cut(s) 333, 755
GluI GCNGC 6 cut(s) 414, 465, 757, 1068, 1320, 1464
GsuI CTGGAG 1 cut(s) 1084
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 686, 844
HapII CCGG 1 cut(s) 378
HgaI GACGC 3 cut(s) 284, 701, 1386
HhaI GCGC 2 cut(s) 334, 756
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 6 cut(s) 38, 307, 1146, 1296, 1342, 1346
Hin6I GCGC 2 cut(s) 332, 754
HinP1I GCGC 2 cut(s) 332, 754
HinfI GANTC 7 cut(s) 72, 85, 106, 212, 861, 889, 1061
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 12, 951
Hpy166II GTNNAC 2 cut(s) 238, 1213
Hpy188I TCNGA 6 cut(s) 9, 53, 532, 672, 835, 888
Hpy188III TCNNGA 9 cut(s) 69, 82, 146, 582, 621, 703, 913, 1049, 1101
Hpy8I GTNNAC 2 cut(s) 238, 1213
Hpy99I CGWCG 2 cut(s) 278, 1402
HpyAV CCTTC 3 cut(s) 299, 445, 1381
HpyCH4III ACNGT 4 cut(s) 46, 233, 325, 936
HpyCH4IV ACGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 6 cut(s) 473, 692, 731, 791, 1325, 1460
HpyF3I CTNAG 1 cut(s) 1050
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 6 cut(s) 38, 307, 1146, 1296, 1342, 1346
HspAI GCGC 2 cut(s) 332, 754
KasI GGCGCC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 3 cut(s) 48, 53, 270
LmnI GCTCC 2 cut(s) 746, 1048
Lsp1109I GCAGC 5 cut(s) 476, 743, 1054, 1331, 1450
LweI GCATC 2 cut(s) 682, 688
MaeI CTAG 2 cut(s) 77, 1478
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 890, 1183
MalI GATC 3 cut(s) 50, 55, 272
MboI GATC 3 cut(s) 48, 53, 270
MboII GAAGA 7 cut(s) 274, 284, 818, 1015, 1126, 1253, 1466
MfeI CAATTG 1 cut(s) 987
MhlI GDGCHC 3 cut(s) 751, 1045, 1077
MluCI AATT 4 cut(s) 14, 877, 987, 1411
Mly113I GGCGCC 1 cut(s) 332
MlyI GAGTC 6 cut(s) 66, 79, 100, 221, 870, 898
MmeI TCCRAC 2 cut(s) 32, 538
Mph1103I ATGCAT 2 cut(s) 681, 1344
MseI TTAA 3 cut(s) 390, 648, 930
MslI CAYNNNNRTG 1 cut(s) 1343
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 197, 847
MunI CAATTG 1 cut(s) 987
MvaI CCWGG 2 cut(s) 197, 847
MwoI GCNNNNNNNGC 6 cut(s) 473, 692, 731, 791, 1325, 1460
NarI GGCGCC 1 cut(s) 332
NdeI CATATG 1 cut(s) 761
NdeII GATC 3 cut(s) 48, 53, 270
NlaIII CATG 6 cut(s) 38, 307, 1146, 1296, 1342, 1346
NlaIV GGNNCC 2 cut(s) 333, 342
NmuCI GTSAC 1 cut(s) 890
NsiI ATGCAT 2 cut(s) 681, 1344
NspI RCATGY 2 cut(s) 307, 1346
NspV TTCGAA 1 cut(s) 1496
PasI CCCWGGG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PfeI GAWTC 1 cut(s) 1061
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 6 cut(s) 415, 466, 758, 1069, 1321, 1465
PleI GAGTC 6 cut(s) 66, 79, 100, 220, 869, 897
PluTI GGCGCC 1 cut(s) 335
PpsI GAGTC 6 cut(s) 66, 79, 100, 220, 869, 897
PshBI ATTAAT 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 751
Psp1406I AACGTT 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 195, 845
PspGI CCWGG 2 cut(s) 195, 845
PspN4I GGNNCC 2 cut(s) 333, 342
PspPI GGNCC 4 cut(s) 454, 633, 843, 1223
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 5 cut(s) 263, 569, 875, 1423, 1469
RsaNI GTAC 5 cut(s) 262, 568, 874, 1422, 1468
RseI CAYNNNNRTG 1 cut(s) 1343
SacI GAGCTC 1 cut(s) 751
SaqAI TTAA 3 cut(s) 390, 648, 930
SatI GCNGC 6 cut(s) 414, 465, 757, 1068, 1320, 1464
Sau3AI GATC 3 cut(s) 48, 53, 270
Sau96I GGNCC 4 cut(s) 454, 633, 843, 1223
SchI GAGTC 6 cut(s) 66, 79, 100, 221, 870, 898
ScrFI CCNGG 2 cut(s) 197, 847
SduI GDGCHC 3 cut(s) 751, 1045, 1077
SfaNI GCATC 2 cut(s) 682, 688
SfoI GGCGCC 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 1496
SinI GGWCC 3 cut(s) 454, 633, 1223
SmiMI CAYNNNNRTG 1 cut(s) 1343
SmlI CTYRAG 2 cut(s) 703, 913
SmoI CTYRAG 2 cut(s) 703, 913
Sse9I AATT 4 cut(s) 14, 877, 987, 1411
SseBI AGGCCT 1 cut(s) 686
SsiI CCGC 5 cut(s) 103, 132, 319, 413, 1326
SspDI GGCGCC 1 cut(s) 331
SspI AATATT 1 cut(s) 1125
SspMI CTAG 2 cut(s) 77, 1478
SstI GAGCTC 1 cut(s) 751
StuI AGGCCT 1 cut(s) 686
StyD4I CCNGG 2 cut(s) 195, 845
TaaI ACNGT 4 cut(s) 46, 233, 325, 936
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 210, 273, 1496
TasI AATT 4 cut(s) 14, 877, 987, 1411
TatI WGTACW 1 cut(s) 873
TauI GCSGC 1 cut(s) 416
TfiI GAWTC 1 cut(s) 1061
Tru1I TTAA 3 cut(s) 390, 648, 930
Tru9I TTAA 3 cut(s) 390, 648, 930
TscAI CASTG 3 cut(s) 51, 238, 474
TseFI GTSAC 1 cut(s) 890
TseI GCWGC 5 cut(s) 464, 756, 1067, 1319, 1463
Tsp45I GTSAC 1 cut(s) 890
TspDTI ATGAA 5 cut(s) 51, 179, 507, 1131, 1424
TspGWI ACGGA 2 cut(s) 813, 819
TspRI CASTG 3 cut(s) 51, 238, 474
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 454, 633, 1223
VspI ATTAAT 1 cut(s) 390
XapI RAATTY 2 cut(s) 14, 1411
XceI RCATGY 2 cut(s) 307, 1346
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 2 cut(s) 77, 1478
Zsp2I ATGCAT 2 cut(s) 681, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.